mRNA_H-paniculata_contig3968.10291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3968.10291.1
Unique NamemRNA_H-paniculata_contig3968.10291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3968.10291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3968contigH-paniculata_contig3968:6548..10433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003500.1
Exons3
Model size717
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3968.10291.1prot_H-paniculata_contig3968.10291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3968 6573..10433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.068282-UTR-H-paniculata_contig3968:6547..65721622930214.068282-UTR-H-paniculata_contig3968:6547..6572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3968 6548..6572 +
1691481194.082328-UTR-H-paniculata_contig3968:6547..65721691481194.082328-UTR-H-paniculata_contig3968:6547..6572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3968 6548..6572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.0852978-CDS-H-paniculata_contig3968:6572..68751622930214.0852978-CDS-H-paniculata_contig3968:6572..6875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 6573..6875 +
1691481194.0924692-CDS-H-paniculata_contig3968:6572..68751691481194.0924692-CDS-H-paniculata_contig3968:6572..6875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 6573..6875 +
1622930214.1010382-CDS-H-paniculata_contig3968:7374..75041622930214.1010382-CDS-H-paniculata_contig3968:7374..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 7375..7504 +
1691481194.1016908-CDS-H-paniculata_contig3968:7374..75041691481194.1016908-CDS-H-paniculata_contig3968:7374..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 7375..7504 +
1622930214.1269596-CDS-H-paniculata_contig3968:10176..104331622930214.1269596-CDS-H-paniculata_contig3968:10176..10433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 10177..10433 +
1691481194.1111534-CDS-H-paniculata_contig3968:10176..104331691481194.1111534-CDS-H-paniculata_contig3968:10176..10433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 10177..10433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3968.10291.1

>prot_H-paniculata_contig3968.10291.1 ID=prot_H-paniculata_contig3968.10291.1|Name=mRNA_H-paniculata_contig3968.10291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MPAAAPPGHVRRRDTAVQVESISQAAVTGRDGCPELTPRRQNKEAGAATA
PAGAAAELPYADGAVLELPHTDGGAAVDNEKTERVVSMLAALEEVVMKMC
EDMWRLEDRLDNHDSLASPLAEAHEEPQAGFQDFAGRVDRDADGGNVAGG
AGRGEEHAGQESLHARQEVEDVINTEARESEVAAQVEARLREILHFPRGN
EDGCPGKLWRVPRRSHGEGHHDQQRLGAEE
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mRNA from alignment at H-paniculata_contig3968:6548..10433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3968.10291.1 ID=mRNA_H-paniculata_contig3968.10291.1|Name=mRNA_H-paniculata_contig3968.10291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3886bp|location=Sequence derived from alignment at H-paniculata_contig3968:6548..10433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGGCGACCATAGCACGGATATAATGCCTGCCGCCGCCCCTCCAGGGC
ACGTGCGGAGACGGGACACCGCAGTACAGGTTGAAAGCATATCTCAGGCT
GCTGTGACTGGCCGTGATGGGTGCCCCGAGCTTACTCCGCGGCGGCAGAA
TAAAGAGGCTGGTGCTGCTACAGCGCCGGCGGGGGCGGCGGCGGAGTTGC
CGTATGCAGATGGGGCGGTTTTGGAGTTGCCGCACACAGACGGCGGGGCG
GCGGTGGATAATGAGAAGACGGAACGGGTTGTGAGCATGCTAGCAGCGCT
CGAGGAGGTGGTGATGAAGATGTGCGAGGTGAAACAAAGTGGTCTGCGAT
TTTTTCTTGTCTGGGATTGATTTTTCTCTTTCATTTTGTTTTTTGACCCG
TACCCTGTTTTTTTTTTCAAGCAGAAGAAAGTCGCGATTTTCCGAAGTGT
TCCCACATCGCCCAATGGATTATTACCTACCCAGCACACAGAGAACTGGA
TGATAACAGTATTGAGATGAGGGGGATAGGCCAATGCGATCGCCCGCTTC
GAGCGATGTTTATAAGAATGCCACAGCCCTAAAATATGCCTCTCCCTTAG
TATCAACCCCCCTACATAGATTGCATCGACCTTACTACCCCTCTCTCCAC
CCTTGCGCGTGGGTGAGAGCTATGATACCCCCCCCGCTCTATAAATATAT
ATTTCTTTTTTCAAGGCACCCCCCCCGCGCCCTGCCTCCCTTCAAAGGTC
GCCGCCGCCGTCGCTTCCTGGGCACTTGTCCACATAAAAATATGTCCTCC
GCTGATGTGCCCAAATATTCCCCGCAGGATATGTGGCGTCTCGAGGATAG
ATTAGATAACCATGACAGCCTTGCGAGCCCCCTTGCCGAGGCCCACGAGG
AGCCGCAAGCGGGGTTCCAAGATTTCGCCGGGAGGGTCGACCGAGATGCG
GATGGAGGTGAGAGAACACGGAGAGACAGTTTGACGGGCATACCTCGTCC
TTGATTTTTCCCCAAGTCTCGAGCGCACACGCTCGTCTGAGGAGACTTAC
CGTGTCTCCCCGTGTGCGGTGTTCGAGAGAAATAAGCAATACAACTCGGT
CCTTCCCTAGTTTAGTTTTCCTTTTATCTTTTTTGCCTTAGAGTTTTATT
TCATGGATACTTTTTCCAGTTCTTAGACAAGATTGAGTGGTATAAGGGGG
TGCGTGCATGCTCTGAGTATATTTCGCGATAATATATATATAATATTGTA
GTAGGAGTACCGCCAGCGCGCGCATGTATGTTTTAGGAGATTAGTTCACT
TGCTTAATGAGGGCAGGAGTAGCATTGTTTGCTTTCCAAGATTAGGGTTA
CAATGGTGTATTCTAGCTGCGGTTCTCACCCTTGCTGCCAAAGGATTTTC
CGCGCTCCCAACAGGGGTGCGTTCGGATGCTAAAAGTCTTGGGTGGCATG
TTCGTAATTTGTGGGTACTTGGGCATGGATGGATGGATGGATGGATGGAT
GGATGGATGAAGGGACGGATGAAGGGACGGATGGGTCGACCGTCAAAACG
TGTTGCTTTTTTAATCCTCTGTCAAGGGTAATAGTAAATCTCAGTTTTAA
CACATGTGCTCCCAAATACAGTTAGTGTGAAATTACCCAATATAAGCCAC
AATCTTCTGTAGAGGACAATACACATTTTTCACAATGGCGACACCGAGAG
ATATCTCTAGCTGATTAGGGATAACGAGGTCACGGGTTCAAGTTCAAACC
CAGCCCAGATCGTCGCTCTAAAAAAAAAAAAAAAGCCGAAAAGTTATGCG
GAACTTAGAAGTCGGGAAATGGTCGAGGAAAGAAAGTAGTAGGGTCCATG
AACTATTTTCCTGCGGAAGATGTTGGCTTGGTCATCCAACACACGCAGGA
GATACGTGAAGAAAACACGGTGGGAAAAATATCGTTACCACTTGGCGGCC
AAAAACGGCATCTCTCGAAGGGTCGGGCAAGCAGTAGGATATTAAAACTG
ATGAGACATACTGTAGCTCTTGTGTCTGTACACCGAGTAAACACCTCCAG
TTCACAACTTTTTATGATTCTCTCCTTCGCCTGGGTGGTGTTTGGAAGAA
GTGTGAAGGTAACGCGCACAAATTCGTTGCGATAGTTCTCGTTCGATAGG
ACGACAGCCCGTAACCAGCACGTGTTATTCAATGGATGTACTCGCAGAGA
GCCAGCTCCATGTGACAAGCCTGGAAGAGCCGGCTGGAATACGAATCCTC
TTGTCCTTGGCGAGTTTTTTGTGCATGTGTCTGTACAGTATGCAGGAACT
TTGCATAGGGTGTCAACTCGACACGACCCCCCTCCCTTAGCCCTTTCAGC
GCTCGCTAGTTGTCTTGAAATCCCTATTCCATCCCCATATATCTAACCGG
CACGTTCAAGACGGAGATAAACAATGCCCCATAACTCGATTTACCGGGAG
AGAGAGTCGCCGCTGTTCAGACAGATAGTCCCAGTACAGACAGACTAGCG
ATACAAAAACAGCTGAGGGATTGCGGCGCTGCACCGAATATTCCACTCTC
CGGCGCGAAGCCCCGAAACTATTTTGGACTTCAGCGGCTTGCCGACGCCA
AAGCGGATCGAGGGGTACCGCGGATAGAGGGCTGTTGAGCCCCTGATTCG
GCGCAATTCAAAGGTGGCGGGCCAAGACCAGGAAGTGTTAAAACCCCCAA
AGCACATCTTAGCCTGACCACGGGTCTGATCAGCCAAATGCGTACGAAAT
ACGGCTTTCCTAAAGATGCTAAGAGGCCTAAATTGAAAAGAAGGTGACGT
AAATAGCGGTTTACCTCCCACGTCAGGGTTAGGGTTCAAGGTTAGGGCCC
GGGGTGGGGGGGGGGTCACTGCTGTCTCCGGTGGGCGCCGATTCGGCCGC
AGGCCTGGTTTTAACGCTGGTACAGACAGTAAAGGTACTTGATGTTTGTG
ATGGTTTTGCCCTCACAGTGATGGCTGCAGCGCTCCGCACTTGTTCGTTG
CCTGATAGGAGATGCATTTTGTGTTGTGGCGAAGATAGCCTCTTTAAACG
GCACCCAAAGGGTTAGTTTTTGTGTGCAAGTTAACTGTTTGTACGTACTT
TTTTCTGTTCCGAAATATCCTTCCGGCCTAATAAACAGATAGGTGGAAAA
TTAAATCTAGGTTTTGCCTTCTTGGAATTACAAACAGCACAACACAAGAG
GGTAAAAATAAAGCCAGAAGGCTGAAAACAGCACTCACTGCGAAGTGACT
TACTTTTTTCAACGCCACACTGTTAGAACCAGACGTGAATGATTGATGCG
TTTTTTACAATTCATTTGATATACAATGGTATTCATATAGCTACTCTGTC
CTATCGGTAAATATCGTTCTTTTTGCAGAGAGATACTTGGGAATACTTCC
GATCTGTTTTGAAAAAATTACATCGAAGTCTCAACATGTATATTTTGGGG
CTTGAACCACAAATTATGGGTCAAACAGTTGACTGTTGATAGCAAAACAT
ACACCGTTAAAAAAAAATCACTCGACCGAAAAAAAAGACCATACTTCCAT
TTGTCATCGCTTATGTCAAGGTACTTCATCCACTACTTGTATGCTCTTAC
ACCTGTTTTACAATAAAATAACAAAAAAGGCAACGTCGCCGGCGGTGCCG
GAAGGGGGGAAGAACACGCAGGACAAGAAAGTTTACACGCTAGGCAAGAG
GTAGAGGATGTCATCAACACTGAGGCGAGAGAGTCGGAGGTCGCAGCTCA
GGTAGAGGCGCGCCTCCGTGAGATACTGCACTTCCCACGGGGTAATGAGG
ATGGTTGCCCTGGCAAATTGTGGCGCGTTCCGCGAAGGAGCCATGGGGAG
GGTCACCATGACCAACAAAGGCTTGGGGCGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3968:6548..10433+

>mRNA_H-paniculata_contig3968.10291.1 ID=mRNA_H-paniculata_contig3968.10291.1|Name=mRNA_H-paniculata_contig3968.10291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig3968:6548..10433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCCGCCGCCCCTCCAGGGCACGTGCGGAGACGGGACACCGCAGT
ACAGGTTGAAAGCATATCTCAGGCTGCTGTGACTGGCCGTGATGGGTGCC
CCGAGCTTACTCCGCGGCGGCAGAATAAAGAGGCTGGTGCTGCTACAGCG
CCGGCGGGGGCGGCGGCGGAGTTGCCGTATGCAGATGGGGCGGTTTTGGA
GTTGCCGCACACAGACGGCGGGGCGGCGGTGGATAATGAGAAGACGGAAC
GGGTTGTGAGCATGCTAGCAGCGCTCGAGGAGGTGGTGATGAAGATGTGC
GAGATGCCTGCCGCCGCCCCTCCAGGGCACGTGCGGAGACGGGACACCGC
AGTACAGGTTGAAAGCATATCTCAGGCTGCTGTGACTGGCCGTGATGGGT
GCCCCGAGCTTACTCCGCGGCGGCAGAATAAAGAGGCTGGTGCTGCTACA
GCGCCGGCGGGGGCGGCGGCGGAGTTGCCGTATGCAGATGGGGCGGTTTT
GGAGTTGCCGCACACAGACGGCGGGGCGGCGGTGGATAATGAGAAGACGG
AACGGGTTGTGAGCATGCTAGCAGCGCTCGAGGAGGTGGTGATGAAGATG
TGCGAGGATATGTGGCGTCTCGAGGATAGATTAGATAACCATGACAGCCT
TGCGAGCCCCCTTGCCGAGGCCCACGAGGAGCCGCAAGCGGGGTTCCAAG
ATTTCGCCGGGAGGGTCGACCGAGATGCGGATGGAGGATATGTGGCGTCT
CGAGGATAGATTAGATAACCATGACAGCCTTGCGAGCCCCCTTGCCGAGG
CCCACGAGGAGCCGCAAGCGGGGTTCCAAGATTTCGCCGGGAGGGTCGAC
CGAGATGCGGATGGAGGCAACGTCGCCGGCGGTGCCGGAAGGGGGGAAGA
ACACGCAGGACAAGAAAGTTTACACGCTAGGCAAGAGGTAGAGGATGTCA
TCAACACTGAGGCGAGAGAGTCGGAGGTCGCAGCTCAGGTAGAGGCGCGC
CTCCGTGAGATACTGCACTTCCCACGGGGTAATGAGGATGGTTGCCCTGG
CAAATTGTGGCGCGTTCCGCGAAGGAGCCATGGGGAGGGTCACCATGACC
AACAAAGGCTTGGGGCGGAGGAGGCAACGTCGCCGGCGGTGCCGGAAGGG
GGGAAGAACACGCAGGACAAGAAAGTTTACACGCTAGGCAAGAGGTAGAG
GATGTCATCAACACTGAGGCGAGAGAGTCGGAGGTCGCAGCTCAGGTAGA
GGCGCGCCTCCGTGAGATACTGCACTTCCCACGGGGTAATGAGGATGGTT
GCCCTGGCAAATTGTGGCGCGTTCCGCGAAGGAGCCATGGGGAGGGTCAC
CATGACCAACAAAGGCTTGGGGCGGAGGAG
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