mRNA_H-paniculata_contig3968.10290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3968.10290.1
Unique NamemRNA_H-paniculata_contig3968.10290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3968.10290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3968contigH-paniculata_contig3968:1624..3493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue9.8e-09
Seed eggNOG ortholog2880.D8LBL5
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930214.1739922-CDS-H-paniculata_contig3968:1623..16501622930214.1739922-CDS-H-paniculata_contig3968:1623..1650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 1624..1650 +
1691481194.122879-CDS-H-paniculata_contig3968:1623..16501691481194.122879-CDS-H-paniculata_contig3968:1623..1650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 1624..1650 +
1622930214.192754-CDS-H-paniculata_contig3968:3286..34931622930214.192754-CDS-H-paniculata_contig3968:3286..3493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 3287..3493 +
1691481194.1417835-CDS-H-paniculata_contig3968:3286..34931691481194.1417835-CDS-H-paniculata_contig3968:3286..3493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3968 3287..3493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3968.10290.1prot_H-paniculata_contig3968.10290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3968 1624..3493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3968.10290.1

>prot_H-paniculata_contig3968.10290.1 ID=prot_H-paniculata_contig3968.10290.1|Name=mRNA_H-paniculata_contig3968.10290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
NGLRKAFDKKGTGAVRLARALRRGSKANLKSLVLCHIRLADSRAVAALAS
ALASHSSLVSLSLRRCGLAGEPGGRFAA
back to top

mRNA from alignment at H-paniculata_contig3968:1624..3493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3968.10290.1 ID=mRNA_H-paniculata_contig3968.10290.1|Name=mRNA_H-paniculata_contig3968.10290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1870bp|location=Sequence derived from alignment at H-paniculata_contig3968:1624..3493+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGCCTGCGAAAGGCATTCGACAAGGTGAACACATATCATCCACAGCT
GACCCTCTGCCGTCGATAGGGCTAAGAGATATGTAGCTAACGCGCTGGGT
GCGTCGATCGTCGCATGCGGAATAAAATAACGGATATGCCCTTTCGTCGG
CCGTTGGTGTGCTAGAATGGGTAGAAAAGGCAACATAGAAAATCACGAAA
ATGCCATATCTTGAAAAAAAAAAAATGGGCACTATGTTTTTTTTTGTTTT
TGTTTGTTTCTTGTATCTTCGACTCGCTCATCTCCTCCAAATTTCGAAGT
CAGAACTCCCAAAATTCGCACCTCAAGTTCAGGTTGAAGTTTTTTTGGTT
TTTTTTTGCCTCTCTAGGGACTCGACCGCTAAACCATGATGTTTTTTCCC
CTTGAAACCGCCATTTCAACACACCGATTTGGTTATTTTTACAGTTTTAG
GACTGGAAGTAGGTCAATGTGTGTGCCAAGTATCTACTGGGGCCCTAGTT
TTTTACTGGCGTTCTTTTTCGAGTATCCGTCTTCCATACCCACACATGTT
TTGCCCTGCAGAGAATATTCTGAAATCCGGTTTGCGCCTAATCCTCCTAC
ACACTTAGCGCACACTCCATACAAAACTGAGTCACCTCTTGTTATCCCCT
ACTGTATCGGCCTACTTGTTCTGGGCCGTATTGTACGGGCACTCCCCCGC
GTCTAACTTCGTCGGTTCGTTCGTGGAATCATTCATCGCCCGGAAGTATA
AATTCCCCTATCGTTATGGGCATGTTTTTTTTTCTTGCTGTACTTGGTAC
TACATGCTTCAAATCGCCTTTACAATGTTGGTGGCGATGCTGTTTGTCTC
TCATGTTGTTCGGAGTTGTCTTCAGCAGGCGATTGTCGCACGTATATGCT
GCTGCCCCCTCCCCCCTGCCCTTCTCCTCGCTCGACCGTACCCTTCCCTC
CCTCCCTTCCCCCGGATCAATGGAACTTCTGACAAAGATAGGGTTCGCTA
ATTTTTATCATGACTGGGTATTTGTAGCCATAATTGTAGGCTAATTCACC
CCCCCCCCCCCCCCGCGCGCCGCCGCCGCCGGCGGCCGCTCTCGATTGGC
CTGAACAGACGAGAGGGTTGAGGTAGATGGGGCAAGTAAAAGATTTAAAT
AGAAAATGAGACATATTTGGCAACCGAAGTAGGAAAAGAGCGATTGGCTA
TCATCGGAATTCGCTCTGAAAAGAAACAAATCCCGTCTTTCCGAGGAAAC
ATGGTCAGTGGTGTAACAGCTACGACATGCGAAACATGAATGCCTCTGTT
ATCGATAGAACTTTTACTGATAAGTGCACACAACCTGACACAACTGGAGT
GTAAGGTCAGCTACATAACCTCAACGCCGATATAATCGAGTTTTTATACT
CCTTCCTTATTGGTCATGATCTAATAAATTTTGCTGACAAGTGTAAACAA
CTGAAGTTTGAAGTCATCTGCTGTATAATCTACGTCAACATGGGTACAGT
GGAGTTATTACATGAGCTTCAGAGCTATAATTCAACTGACTGTAGCAGCG
TTTACTATACCCCCCCCCCCACACACACATACGTAATTTACTCCCTCCCA
TGGACCGATCGATTATCTACTGCTGGGTGGACTCACGCATGGGGTTCCAA
CGAACAAATGAAGAAAGGAACGGGCGCCGTTCGCCTGGCGCGTGCACTCA
GGCGCGGAAGCAAAGCGAACCTGAAGTCGTTGGTGCTATGCCACATTCGC
CTCGCCGACTCGCGCGCCGTCGCCGCCCTGGCGTCGGCCCTCGCCTCCCA
TAGCTCCCTCGTCTCCCTCTCCCTGAGGCGCTGTGGCCTCGCGGGCGAGC
CGGGCGGGCGCTTCGCTGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3968:1624..3493+

>mRNA_H-paniculata_contig3968.10290.1 ID=mRNA_H-paniculata_contig3968.10290.1|Name=mRNA_H-paniculata_contig3968.10290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig3968:1624..3493+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGCCTGCGAAAGGCATTCGACAAGAACGGCCTGCGAAAGGCATTCGA
CAAGAAAGGAACGGGCGCCGTTCGCCTGGCGCGTGCACTCAGGCGCGGAA
GCAAAGCGAACCTGAAGTCGTTGGTGCTATGCCACATTCGCCTCGCCGAC
TCGCGCGCCGTCGCCGCCCTGGCGTCGGCCCTCGCCTCCCATAGCTCCCT
CGTCTCCCTCTCCCTGAGGCGCTGTGGCCTCGCGGGCGAGCCGGGCGGGC
GCTTCGCTGCAAAAGGAACGGGCGCCGTTCGCCTGGCGCGTGCACTCAGG
CGCGGAAGCAAAGCGAACCTGAAGTCGTTGGTGCTATGCCACATTCGCCT
CGCCGACTCGCGCGCCGTCGCCGCCCTGGCGTCGGCCCTCGCCTCCCATA
GCTCCCTCGTCTCCCTCTCCCTGAGGCGCTGTGGCCTCGCGGGCGAGCCG
GGCGGGCGCTTCGCTGCA
back to top