mRNA_H-paniculata_contig39625.10287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39625.10287.1
Unique NamemRNA_H-paniculata_contig39625.10287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.270e-8
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:    4 WICDSGATGHATPSAAHMSSYWQVKETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVL--NVA-----HAPELHYNLFSLR 231
            WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S  + P  V   NV      H P+L +NL S+ 
Sbjct:  365 WIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSVH 447
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BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.000e-6
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 SWICDSGATGHATPSAAHMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 252
            SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D G+
Sbjct:  266 SWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347
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BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.030e-6
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 SWICDSGATGHATPSAAHMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGN 252
            SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++++  +TS+G++  ++ NV H P L  NL S+ ++ D G+
Sbjct: 1162 SWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243
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BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.210e-5
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 SWICDSGATGHATPSAAHMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGNK 255
            SWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D G++
Sbjct:  289 SWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 371
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BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-5
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 SWICDSGATGHATPSAAHMSSYWQVK-ETLRIASGQVIPIVGRGNLSMTFRTSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGNK 255
            SWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++++  RTS+G+   ++ NV H P L  NL S+ ++ D G++
Sbjct:  267 SWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 349
[Close]
BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 50.1 bits (118), Expect = 7.910e-5
Identity = 28/86 (32.56%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:    4 WICDSGATGHATPSAAHMSSYWQV-KETLRIASGQVIPIVGRGNLSMTFRTSNGNVPL-SVLNVAHAPELHYNLFSLRKVADAGNK 255
            W  DSG T + T S         +  +T+ +     IPI+G+G ++MT   + G+  + S+ +V +APEL +NL S+R+  D   K
Sbjct:  381 WTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVDGDYK 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39625.10287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA8.270e-837.35Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
A0A445M2Q0_GLYSO2.000e-638.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO2.030e-638.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA1.210e-537.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA1.300e-537.21Retrovirus-related Pol polyprotein from transposon... [more]
H3H469_PHYRM7.910e-532.56Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39625contigH-paniculata_contig39625:864..1172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930213.6920023-CDS-H-paniculata_contig39625:863..11721622930213.6920023-CDS-H-paniculata_contig39625:863..1172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39625 864..1172 -
1691481193.906958-CDS-H-paniculata_contig39625:863..11721691481193.906958-CDS-H-paniculata_contig39625:863..1172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39625 864..1172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39625.10287.1prot_H-paniculata_contig39625.10287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39625 864..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39625.10287.1

>prot_H-paniculata_contig39625.10287.1 ID=prot_H-paniculata_contig39625.10287.1|Name=mRNA_H-paniculata_contig39625.10287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
SWICDSGATGHATPSAAHMSSYWQVKETLRIASGQVIPIVGRGNLSMTFR
TSNGNVPLSVLNVAHAPELHYNLFSLRKVADAGNKYVGDCDGIIVYPKTG
GVL
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mRNA from alignment at H-paniculata_contig39625:864..1172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39625.10287.1 ID=mRNA_H-paniculata_contig39625.10287.1|Name=mRNA_H-paniculata_contig39625.10287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig39625:864..1172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTGCGGC
TCATATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGATTGCTTCAG
GACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACATTTAGG
ACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATGCCCC
TGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGCCGGTA
ATAAATATGTCGGGGATTGTGATGGAATTATTGTTTATCCGAAGACTGGA
GGAGTATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig39625:864..1172-

>mRNA_H-paniculata_contig39625.10287.1 ID=mRNA_H-paniculata_contig39625.10287.1|Name=mRNA_H-paniculata_contig39625.10287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig39625:864..1172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACCATCTGCGGC
TCATATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGATTGCTTCAG
GACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATGACATTTAGG
ACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGCACATGCCCC
TGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGCCGGTA
ATAAATATGTCGGGGATTGTGATGGAATTATTGTTTATCCGAAGACTGGA
GGAGTATTGTCGTGGATTTGTGATAGTGGGGCCACAGGTCATGCAACACC
ATCTGCGGCTCATATGTCTAGCTATTGGCAAGTCAAAGAGACGCTGCGGA
TTGCTTCAGGACAAGTGATCCCGATTGTTGGTCGGGGAAACCTGAGCATG
ACATTTAGGACGAGTAATGGAAATGTGCCTCTCTCGGTTCTGAATGTCGC
ACATGCCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCG
ATGCCGGTAATAAATATGTCGGGGATTGTGATGGAATTATTGTTTATCCG
AAGACTGGAGGAGTATTG
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