mRNA_H-paniculata_contig3962.10286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI) HSP 1 Score: 618 bits (1594), Expect = 7.620e-198 Identity = 514/954 (53.88%), Postives = 570/954 (59.75%), Query Frame = 2
Query: 2 GFVKMANVLRFTHENCEQYGSRIATKSFKDGVAAAMALLKEADNWDREFEARAQDAA--NG-------VIDVGGGT--PVHGGAASPSQASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANRGEPVLALFNEERAKREATAKQHEWLGKPPLPNKAGKKRAAASSTPSPMKIH-KKLKVNGPSPTHVNN--AATAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYGRNHAVSAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDTAEM---PTCFICQEDVSHWGENAGNGEAMRCAKDGCGRVFHVTCVAHTLQDVAANTPGGCGAKAGTWTCPLHRCARCGSDGGGTHGAMDSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------GGRRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLALLLEGMCSRLANHHLAVPFLRPFLPGVAAPPRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITTPGSSSRAVAPSVAVD-MGVGASGTSSSASNGGCAN-------PTARADE--------------------------KRKKKEAEAVSGNVGNSSAVNTAGVRGNGGMDG---NIMGLLDKCRALGYSRSAELMADVRNLQGKCRQAVSRWGGDPETGGGFGAGAGRVVVRAMDTLAANMESMLARSREELTALEAEVAKKSEDEHRRLTDRGVGGKTGDN-FAWRGECLPPPLRPKNTQATSVTPTQMSSSPXXXXXXXXXXXXXXXXXXAAAACRSSNGILSSMYIPPKSSLPRPPAPEEADLDVVGPAPHPPLRLTRRWSLGEWAEFIQNPPMLR 2680
GFVK++NVLRFT ENCEQYGSRI TKSFKDGVAAA+ALL E++ WD+EF+ARA DAA NG + VG G PV P +DGACEMCGDNNEAKGDILLCDSCDAEYHL+CCTPPL+ CPEGEWFCLTCR NRGEPV LFNEERAK+EAT KQHE L KPPLPNKAGKK+ A +P K + KK K + AA P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P CFIC++D++HWG NAGNGEA+ CA+DGCGRVFHVTCVA+ LQD AA TPGGCGA+AGTW CPLHRCA CG+D G +S XXXXXXXX G RRLWQCTWCSVAFCMKHLP QLATAGRKARVADANQCVHCRSPSPRVKLA+LLEGMCSR+ANHHLA+PFLRPF+PG+A+P XXXXX G ++ + ++ V VG G S+S G AN P A K SS N GV G D +IMGLLDK RALGYSRSAELMADVR LQGKCR+A++ WGGDP TGGGFG G+GR++VRAMDTLAA +E +L RSREELT +E ++AKK+E EHRR TDRGVG + D F WRGECLPP RP T XXXXXXXXXXXXXXXXXX A + PPLR+TRRWSL WAEF+QN P+LR
Sbjct: 76 GFVKLSNVLRFTRENCEQYGSRITTKSFKDGVAAAIALLNESETWDKEFQARALDAATANGNSGADKNLAAVGAGVLHPV------PGILFLEDGACEMCGDNNEAKGDILLCDSCDAEYHLSCCTPPLQVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEATMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKSSSXXXXXXXXXXAADLPAAGSASPTLSDAASAGSLIDVTGDGSPASNTSRNGVHTASTFTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDSSNAGLVVLASPLSGRSGVSGVGGWRKSGXXXXXXXXXXXXXXGSRRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASP--------------------------FGDDNDANDYKXXXXXXXXXGRNAPSAGATLPVQGASVGGGGEVRSSSGGPVANGQPFPSRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXSRSSRAN--GVVEVGVADAPVEDIMGLLDKTRALGYSRSAELMADVRTLQGKCRKAITDWGGDPVTGGGFGEGSGRMIVRAMDTLAAMLEGLLGRSREELTNVEGDIAKKTEREHRRQTDRGVGDGSADGGFPWRGECLPPRARPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVKRL----------PPLRMTRRWSLASWAEFLQNAPVLR 985
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE) HSP 1 Score: 577 bits (1488), Expect = 5.290e-182 Identity = 527/1077 (48.93%), Postives = 590/1077 (54.78%), Query Frame = 2
Query: 2 GFVKMANVLRFTHENCEQYGSRIATKSFKDGVAAAMALLKEADNWDREFEARAQDAA--NG-------VIDVGGGT--PVHGGAASPSQASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANRGEPVLALFNEERAKREATAKQHEWLGKPPLPNKAGKKRAAASSTPSPMKIHKK------------------------------------LKVNG---PSPTHVNNA-------------------------------------------------------ATAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYGR--------------------------------NHAVSAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AEDTAEMPT-CFICQEDVSHWGENAGNGEAMRCAKDGCGRVFHVTCVAHTLQDVAANTPGGCGAKAGTWTCPLHRCARCGSDGGGTHGAMD---SNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GGRRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLALLLEGMCSRLANHHLAVPFLRPFLPGVAAPPRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITTPGSSSRAVAPSVAVDMGV------------------------------------GASGTSSSASNGGCANPTARADEKRKKKEAEAVSGNVGNSSAVNTAGVRGNGGMDGNIMGLLDKCRALGYSRSAELMADVRNLQGKCRQAVSRWGGDPETGGGFGAGAGRVVVRAMDTLAANMESMLARSREELTALEAEVAKKSEDEHRRLTDRGVGGKTGDN-FAWRGECLPPPLRPKNTQATSVTPTQMSSSPXXXXXXXXXXXXXXXXXXAAAACRSSNGILSSMYIPPKSSLPRPPAPEEADLDVVGPAPHPPLRLTRRWSLGEWAEFIQNPPMLR 2680
GFVK++NVLRFT ENCEQYGSRI TKSFKDGVAAA+ALL E++ WD+EF+ARA DAA NG + VG G PV P +DGACEMCGDNNEAKGDILLCDSCDAEYHL+CCTPPLK CPEGEWFCLTCR NRGEPV LFNEERAK+E T KQHE L KPPLPNKAGKK+ A +P K + K + V G PS + N A A XXXXXXX XXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX A+ + N +A P XXXXXXXXXXXXXXXXXXXXXXXXX AE+P CFIC++D++HWG NAGNGEA+ CA+DGCGRVFHVTCVA+ LQD AA TPGGCGA+AGTW CPLHRCA CG+D G SN+ XXXXXXXXXXX G RRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLA+LLEGMCSR+ANHHLA+PFLRPF+PG+A+P XXXXXXXXXXXXXXXXXXXXXX + G + + S AV G A+G + +A + R + V V ++ +IMGLLDK RALGYSRSAELMADVR LQGKCR+A++ WGGDP TGGGFG G+GR++VRAMDTLAA +E +L RSREELT +E ++AKK+E EHRR TDRGVG + D F WRGECLPP RP T XXXXXXXXXXXXXXXXXX PPLR+TRRWSL WAEF+QN P+LR
Sbjct: 76 GFVKLSNVLRFTRENCEQYGSRITTKSFKDGVAAAIALLNESETWDKEFQARALDAATANGNAGADKNLAAVGAGVLHPV------PGIPFLEDGACEMCGDNNEAKGDILLCDSCDAEYHLSCCTPPLKVCPEGEWFCLTCRKNRGEPVTKLFNEERAKKEVTMKQHELLNKPPLPNKAGKKKRDACESPVTTKPNPKKAKXXXXXXXXXXXXXXXXXGSTSPTLSDAASAGSLIDVTGDGSPSSSPSRNGGPTASTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPDXXXXXXARRPRAQGATGARASPEVQQQQKXXXXXXXVXXXXXXXXXXXXXXXXXXQGGLRGKRPRGGGGGEVESCGVVGVQGXXXXXXXXXXXXXXXXXXXXXASYTNPSHAFAKLGIPVALPEGGRGAAPQQLHLQQTMQQLQATQNFGATATPQQQRHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRXAAELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDISNAGLVVLAPPLAGRSGVSGVGGWRKSGXXXXXXXXXXXXXAGSRRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASPFGDXXXXXXXXXXXXXXXXXXXXXXXKDGRKAPSAGVTHPVQGASVGGAGEVGSSSGAVANGQPLPSRPPXXXXXXXXXXXXXXXXXXXXXXXXXSSCDAATGVAVAAKSXXXXXXXXXXXXSRSSRANGVVEVGVADAPVE-------------DIMGLLDKTRALGYSRSAELMADVRTLQGKCRKAITDWGGDPVTGGGFGEGSGRMIVRAMDTLAAILEGLLGRSREELTNVEGDIAKKTEREHRRQTDRGVGDGSADGGFPWRGECLPPRARPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXAAAKKLPPLRMTRRWSLASWAEFLQNAPVLR 1121
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A833R2B7_9POAL (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R2B7_9POAL) HSP 1 Score: 71.2 bits (173), Expect = 9.170e-9 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 233 QASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANRGE 412
+A DDG C++CG + + K +LLCD+CD+EYH+ C PPL PEG W+C +C +RG+
Sbjct: 1185 KAPWDDGLCKVCGVDRDDKS-VLLCDTCDSEYHMYCLNPPLARIPEGNWYCPSCCRSRGK 1243
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A833V8F5_9POAL (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V8F5_9POAL) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query: 233 QASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANRGE 412
+A DDG C++CG + + K +LLCD+CD+EYH+ C PPL PEG W+C +C +RG+
Sbjct: 1186 KAPWDDGLCKVCGVDRDDKS-VLLCDTCDSEYHMYCLNPPLVRIPEGNWYCPSCCRSRGK 1244
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A5B6ZS71_DAVIN (PHD-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZS71_DAVIN) HSP 1 Score: 65.5 bits (158), Expect = 1.810e-8 Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 2
Query: 233 QASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANR 406
+A DDG C++CG + + ++LLCD+CD+EYH C PPL PEG W+C +C A +
Sbjct: 79 KAPWDDGVCKVCGVDKD-DDNVLLCDTCDSEYHTYCLNPPLVRIPEGNWYCPSCVAGQ 135
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A328DMK2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DMK2_9ASTE) HSP 1 Score: 70.1 bits (170), Expect = 1.880e-8 Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 2
Query: 233 QASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRAN 403
+A +DG C++CG +N+ K +LLCD+CDAEYH C +PPL P G W+C +C AN
Sbjct: 1159 KAPWEDGVCKVCGVDNDDKS-VLLCDTCDAEYHTYCLSPPLARIPSGNWYCPSCVAN 1214
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A7S2GUQ6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUQ6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.790e-8 Identity = 56/217 (25.81%), Postives = 79/217 (36.41%), Query Frame = 2
Query: 1097 GEAMRCAKDGCGRVFHVTCVAHTLQDVAANTPGGCGAKAGTWTCPLHRCARCGSDGGGTHGAMDSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRRLWQCTWCSVAFCMKHLP--------------------------------SQLATAGRKARVADAN----QCVHCRSPSPRVKLALLLEGMCSRLANHHLAVPFLRPFLPG 1639
GE M C C +VFH CV + A G G W CP H C C + S S +L++C+ C++++C H+P SQ ++A K R A + +CV+C+ P R LA LLE +R+ANH+LA+PFLRP+L G
Sbjct: 55 GELMLCDYPDCQKVFHKACVWPSSLGPAGGLSID-GRTTGEWICPRHYCCIC----------LSSESRDDQDF---------------------------------QLYKCSDCTISYCEHHVPDELIPGLNKGSGLDNNKATLRNSQTQACSHSHSQCSSAAEKTRAAGRSSEKFKCVYCKEPKARTILARLLESAWARMANHYLALPFLRPYLSG 227
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A2K1L4D6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L4D6_PHYPA) HSP 1 Score: 68.9 bits (167), Expect = 5.060e-8 Identity = 35/74 (47.30%), Postives = 41/74 (55.41%), Query Frame = 2
Query: 245 DDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRA---------NRGEPVLALFNEE 439
DD C CG +E ILLCD CDAEYH+ C PPL+ P+G WFC +C A +RGE LA EE
Sbjct: 1866 DDSTCRACG-VDEDYDSILLCDGCDAEYHIYCLVPPLERVPKGNWFCPSCVAVEEGFPETSSRGEAELAASQEE 1938
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A2R8Q5C5_DANRE (PHD and ring finger domains 1 n=1 Tax=Danio rerio TaxID=7955 RepID=A0A2R8Q5C5_DANRE) HSP 1 Score: 63.9 bits (154), Expect = 5.100e-8 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 2
Query: 233 QASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRAN 403
+ D +CE+CG + + +LLCD CDA YH+ C TPPL A P EWFC C AN
Sbjct: 106 EVDLDQTSCEICG-GRDREDRLLLCDGCDAGYHMECLTPPLDAVPVEEWFCPECIAN 161
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Match: A0A444UA33_ACIRT (PHD and RING finger domain-containing protein 1 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UA33_ACIRT) HSP 1 Score: 68.6 bits (166), Expect = 5.450e-8 Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 2
Query: 203 PVHGGAASPSQASTDDGACEMCGDNNEAKGDILLCDSCDAEYHLACCTPPLKACPEGEWFCLTCRANRGEPVLALFNEERAKREATA 463
PV AA+ A D CE+CG ++ + +LLCD CDA YH+ C PPL A P EWFC C A+ EE ++ E A
Sbjct: 601 PVQNHAAANELAEEDHTQCEVCG-RSDREDRLLLCDGCDAGYHMECLNPPLNAVPVEEWFCPECAVQNASHGAAVAVEEVSEEEVAA 686 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3962.10286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3962.10286.1 >prot_H-paniculata_contig3962.10286.1 ID=prot_H-paniculata_contig3962.10286.1|Name=mRNA_H-paniculata_contig3962.10286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=889bp MANVLRFTHENCEQYGSRIATKSFKDGVAAAMALLKEADNWDREFEARAQback to top mRNA from alignment at H-paniculata_contig3962:1294..16426+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3962.10286.1 ID=mRNA_H-paniculata_contig3962.10286.1|Name=mRNA_H-paniculata_contig3962.10286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15133bp|location=Sequence derived from alignment at H-paniculata_contig3962:1294..16426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3962:1294..16426+ >mRNA_H-paniculata_contig3962.10286.1 ID=mRNA_H-paniculata_contig3962.10286.1|Name=mRNA_H-paniculata_contig3962.10286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5334bp|location=Sequence derived from alignment at H-paniculata_contig3962:1294..16426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |