mRNA_H-paniculata_contig3961.10285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3961.10285.1
Unique NamemRNA_H-paniculata_contig3961.10285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3961.10285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3961contigH-paniculata_contig3961:10125..11196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930213.3362806-CDS-H-paniculata_contig3961:10124..103521622930213.3362806-CDS-H-paniculata_contig3961:10124..10352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 10125..10352 -
1691481193.727478-CDS-H-paniculata_contig3961:10124..103521691481193.727478-CDS-H-paniculata_contig3961:10124..10352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 10125..10352 -
1622930213.3543134-CDS-H-paniculata_contig3961:11070..111961622930213.3543134-CDS-H-paniculata_contig3961:11070..11196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 11071..11196 -
1691481193.7356887-CDS-H-paniculata_contig3961:11070..111961691481193.7356887-CDS-H-paniculata_contig3961:11070..11196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 11071..11196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3961.10285.1prot_H-paniculata_contig3961.10285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3961 10125..11196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3961.10285.1

>prot_H-paniculata_contig3961.10285.1 ID=prot_H-paniculata_contig3961.10285.1|Name=mRNA_H-paniculata_contig3961.10285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MQRVINVCSEEDEREERITQNQKHERELAVLRQEIRRLHEHKERLDGEVK
RMRPVFEWCQTFALTNGMPRGTSSSAEEMGSGPPYAASMKPSSRRVNDDH
DGHRDDSQRRMDGEEGSR
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mRNA from alignment at H-paniculata_contig3961:10125..11196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3961.10285.1 ID=mRNA_H-paniculata_contig3961.10285.1|Name=mRNA_H-paniculata_contig3961.10285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-paniculata_contig3961:10125..11196- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACGCGTTATCAACGTGTGTTCGGAGGAAGACGAGCGGGAGGAACG
GATCACACAGAATCAAAAGCATGAACGTGAGCTGGCGGTCCTCCGGCAGG
AAATTCGCCGGCTCCACGAGCACAAGGTGTGATACGGAAACCATGGGGGG
ATATTTTTTCTGCATGCCGACCCGGTAAAATTCGTCTTTTTTGTTTGTAA
CGCGTGACCTTGGCTCTGCTTCCTTCGCGTTATTTTCATCGAGCTGGATA
TCTTGTATGGGTCCTCGCAGTACAGCGACTCTAGTTTTCAGGGCTCAGCA
CTTGACGTGTGGACATCACGGCCACCCTTTCCCGTCCCCGCCCTAGCGCC
GGACAGTGGGTTGGTTTACTCTGGAGTTGTTAAAATATGGTGAGCGATGT
AGAGGAAGAACAAGGCGGGCCCCGCGGCGTGTTGGGTTTGGATTCTCCTT
GGTCTCCGCCGTGTATTTTTTTCGGAATTTCTGCGTGGAACATGTGGTAG
ACGTGCTTTGGCTGACCATTCTGGAGGTGGCGTGATTAGCACGTATTTTT
CTGTTTGATGACAGCACCGCGATGTAATTACACAGGCTCGTGTCGGTGCC
AAATAAGAAAGGTTGCGAGCGTGCCTCTTAAACGGCTTTCGACGCAACGA
CTGAAGGCGTACTATGGGAGGTTTTGCAATGATACCGACCGACCTCATCG
CGCCTGTTGTTTTATGGTATTGCCTTGGCCAAAGGTCTCAACCCTACTGC
TTGTTAAGCATCCGTCTTGTAGTTATGGTATGTCTGAATATTTCTCCGTG
GTCCCATGTTCTTCTCCTTGCCGTGTTTTACGCAACCGCTGCAGGAGCGA
CTTGACGGAGAAGTGAAGCGAATGCGCCCTGTGTTCGAGTGGTGCCAGAC
TTTCGCCTTGACAAACGGTATGCCACGTGGGACCAGCTCATCCGCGGAAG
AAATGGGTAGCGGTCCCCCATACGCGGCATCTATGAAGCCTTCCAGCCGA
AGAGTGAATGATGACCACGACGGTCACCGCGACGATTCGCAACGGAGGAT
GGATGGAGAAGAGGGATCCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3961:10125..11196-

>mRNA_H-paniculata_contig3961.10285.1 ID=mRNA_H-paniculata_contig3961.10285.1|Name=mRNA_H-paniculata_contig3961.10285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig3961:10125..11196- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACGCGTTATCAACGTGTGTTCGGAGGAAGACGAGCGGGAGGAACG
GATCACACAGAATCAAAAGCATGAACGTGAGCTGGCGGTCCTCCGGCAGG
AAATTCGCCGGCTCCACGAGCACAAGATGCAACGCGTTATCAACGTGTGT
TCGGAGGAAGACGAGCGGGAGGAACGGATCACACAGAATCAAAAGCATGA
ACGTGAGCTGGCGGTCCTCCGGCAGGAAATTCGCCGGCTCCACGAGCACA
AGGAGCGACTTGACGGAGAAGTGAAGCGAATGCGCCCTGTGTTCGAGTGG
TGCCAGACTTTCGCCTTGACAAACGGTATGCCACGTGGGACCAGCTCATC
CGCGGAAGAAATGGGTAGCGGTCCCCCATACGCGGCATCTATGAAGCCTT
CCAGCCGAAGAGTGAATGATGACCACGACGGTCACCGCGACGATTCGCAA
CGGAGGATGGATGGAGAAGAGGGATCCAGGGAGCGACTTGACGGAGAAGT
GAAGCGAATGCGCCCTGTGTTCGAGTGGTGCCAGACTTTCGCCTTGACAA
ACGGTATGCCACGTGGGACCAGCTCATCCGCGGAAGAAATGGGTAGCGGT
CCCCCATACGCGGCATCTATGAAGCCTTCCAGCCGAAGAGTGAATGATGA
CCACGACGGTCACCGCGACGATTCGCAACGGAGGATGGATGGAGAAGAGG
GATCCAGG
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