mRNA_H-paniculata_contig3961.10284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3961.10284.1
Unique NamemRNA_H-paniculata_contig3961.10284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3961.10284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3961contigH-paniculata_contig3961:4598..8974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size738
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3961.10284.1prot_H-paniculata_contig3961.10284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3961 4687..8934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930213.207336-UTR-H-paniculata_contig3961:4597..46861622930213.207336-UTR-H-paniculata_contig3961:4597..4686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3961 4598..4686 -
1691481193.6592522-UTR-H-paniculata_contig3961:4597..46861691481193.6592522-UTR-H-paniculata_contig3961:4597..4686Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3961 4598..4686 -
1622930213.2937474-UTR-H-paniculata_contig3961:8934..89741622930213.2937474-UTR-H-paniculata_contig3961:8934..8974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3961 8935..8974 -
1691481193.7169003-UTR-H-paniculata_contig3961:8934..89741691481193.7169003-UTR-H-paniculata_contig3961:8934..8974Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3961 8935..8974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930213.2263057-CDS-H-paniculata_contig3961:4686..49211622930213.2263057-CDS-H-paniculata_contig3961:4686..4921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 4687..4921 -
1691481193.6751187-CDS-H-paniculata_contig3961:4686..49211691481193.6751187-CDS-H-paniculata_contig3961:4686..4921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 4687..4921 -
1622930213.2391407-CDS-H-paniculata_contig3961:5772..60321622930213.2391407-CDS-H-paniculata_contig3961:5772..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 5773..6032 -
1691481193.6855206-CDS-H-paniculata_contig3961:5772..60321691481193.6855206-CDS-H-paniculata_contig3961:5772..6032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 5773..6032 -
1622930213.2651927-CDS-H-paniculata_contig3961:8132..82381622930213.2651927-CDS-H-paniculata_contig3961:8132..8238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 8133..8238 -
1691481193.6981301-CDS-H-paniculata_contig3961:8132..82381691481193.6981301-CDS-H-paniculata_contig3961:8132..8238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 8133..8238 -
1622930213.2815719-CDS-H-paniculata_contig3961:8926..89341622930213.2815719-CDS-H-paniculata_contig3961:8926..8934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 8927..8934 -
1691481193.7094097-CDS-H-paniculata_contig3961:8926..89341691481193.7094097-CDS-H-paniculata_contig3961:8926..8934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3961 8927..8934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3961.10284.1

>prot_H-paniculata_contig3961.10284.1 ID=prot_H-paniculata_contig3961.10284.1|Name=mRNA_H-paniculata_contig3961.10284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
MLGNMGAQLAAGEHIEGIVVDMAGHLRARGFMATEAEKALEAGIGVEAPE
PVIRALTPSLSCPHPRTVNKAAVLINRALLNIGVGDTPNAGLGEGLPADL
LQALHDGRRAKQAEGRAACNEALARCQLAMGEASFRDALATFTDTATAAR
VAEAVKVGTAAGARGASLGASAGRSGRLKAAMKAKKKDGTTIKEGGEWEC
TV*
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mRNA from alignment at H-paniculata_contig3961:4598..8974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3961.10284.1 ID=mRNA_H-paniculata_contig3961.10284.1|Name=mRNA_H-paniculata_contig3961.10284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4377bp|location=Sequence derived from alignment at H-paniculata_contig3961:4598..8974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAAGCTTGCCAAGAACGGGCTACGCTGTCTAGGAGATATGCTAGGGT
GGGTGTAGGGAAACTTAAGCGTTGCCGTGTTTTTCGTAGATCTCTGCTTT
GTATGTTGCACTGAGCAGAGACGCTTGTCTAACCCCGCCGCGATGGGATA
GATAGATAGATAGTACTGTAGATAATGCTGGTAGCGTCTGAATGCTCCCG
TTGGATGTTTTTGATTCGATTGGCAGTCGGTGTTCGCTCGCTTAAGTCAA
GCGGCAGGTTCTGCTGAGGTAGCGACATGTTGGCGTACGTTATGGTAGCC
GAATGCTGTGTGGGAATCGTTCTGAAATCCACACGTGGCGCGAAGGCAAG
CTTAACGAGCCTGTGTCGTGCGTGTTTTGTGCACCTGGAAATCGCTGCCT
GATGGCGCGAGTCAATCTATGCATGTTCACTGCCTCCGTCACACACTTTG
CGGGCATGTTGTACGTGCTTCGCTGGGCGACTGATCCATGGGCCTTGCTT
CGGTGCCATAAGCTTCGCACTTGATTGTTGCGCAACCGACAGACTACAGC
TTTCGATACTGTGGAATAATATTCAGTAATTTATAAGTAAGTTCCAGAAA
ATAGGCCGTGCTACTAGTAGTAGAAATAGTACAGTGCGATACTCGATCGT
GATTTGGTAGCTAGAGACCACGACGGCTTATTTCTAGAGTATGATTCGTT
TGTACGTCTCTCGTTGCCCTCGAATCTGTTGTGCAGAAACATGGGGGCAC
AGCTCGCAGCTGGCGAGCACATTGAAGGTATCGTAGTCGACATGGCGGGG
CACCTGCGGGCGAGGGGCTTCATGGCAACCGAGGCCGAGAAGGTATAGCA
CGAGAAACGTCAGCGTAGGTCGTGCTGTTTGTGTGGCAGTATTTTAGTGC
GCTGCTGTACTCGATTGAGCAAGGCGGCAAGTACTGCTGAATGAAGAGTT
TGTGTGAAGGAAGAAGAGCAGTAGAGAATCAACGGAACACTCATTTCACA
CCGTGCAACGAAAAGCGATAGCAAGTTCACAAGGCAGCACTTGAGGCTGG
AGCCACGTGAACGATCGAATCCGTTTCCTCTGTAAGTTACCGTGTGGATT
GGCTAGGTGGTCATTATGTAAATGCATGATTTCTTTTCTTGTCTCGTTGC
TTTCGTTGATGTGATGCCCGGCGAGAACATGTTGTTTTGTTTTGTTTCAA
ATGCCACCGCTGGCTTGCCGCTGGAAGGCTGAATCGCCATTAGCGGTCCG
TCAGCCCCTGCGGGTGCCGGCGGATTTTCTTCAAGTGTAGAACACATTTG
AGTTTGCACCGATTGTAACCCATTTTTTTTAATTCTACCGACATTCCAGG
ACAAATGTGTGCAATTTGTGATCATTACCAAGGCACAGTGTTTGTTGGGA
GCTCAGGGTAAAGCCAGAAAAGAATATGCGTGTGAAATGGTTGATTTCTG
TGATTGCTGTTTTTGGGCCGCCCACTGTGCGCTGATTTTTGTAAGCCCAG
TCAACAGTATGCGTACTCACAGCGCGAACATGTCGGCCATGCAGAAAAAA
GAGCGAGGAAACGTCGCGTCGTTGTCGTCGATGTTCTGTCAACGCTTGGG
AAGTCGTTTTATTCAAGCCGGTGTTTTGTCAACGTTTAGCAAGTCATTCT
GAACGAAAACAGAATGTTTACGGGGTCTGAGAGGTTTTTCTGCTTCGAGT
AGGTCTTTTTACCATGATTGACACCCATGTTTTGTTTGTCGACAGAGATT
GTAGGACGTGTTCGTCCTACGTGTGATCTATTTCTTTCAAGTGTCATACC
CCGAGCTTCTAATGACAATATGCCCTGGTGAACGTGTGAGCAAGAGAAAC
GAAAAATCGAATTAATCGCGAGAAGGCTCGTAACGTTTTCCCTGGAACCA
ATGCCCCCCTCTCCGCTGTTTGTAGGACGAAAAACGTTTTATTGTTTTGT
TTTGATCCGATTCGACACTAGTGCAGTATGTAGTTTTACCCCCTCGTAGA
CTCTCCTTCACCGAAATTGTCTCCTGTGTATCTTTCAGACCCATGGTCGG
TGGGCGCTGACATGGAGAGTAGCGCAGTAAGATGATGCGCGTTACAGTGC
TCACTTCGATGAATGTTAATGATAATGTTGATGATACTATATTCAGCGGG
GGGCGTCTCGTGAGTATTTCCGTTTGAAACTGGAGATGCTGGCCAGCATC
CCCCGCGCTTCTTCTCTCCTCCTTTCTCCCACTGATGTGGGCTTTGAAAC
GGTTTTTGGGATCCAGGGCTAACCAGTTACGAGCCCGTCTGCCTATCGCG
AAAACAACTATCGGCTTCCCTGATCGACCGATATCTGAATATGATACTCG
ACTGACCGATAAACAAGCCTCAGAATTGTCCTCGCGGCGAACTTTTACCT
CTTAACCCTCCAAGTCAACCTACTACCGATGATAGGGGCCGCAACGGTAG
CACACGTATATCGTCCTTCGATTTTAACCCACCGTCGGGTCAAAACGGTA
TGGGTTCTAACCGTCCTCGGCACCGGTGGTCTGCCATCCAAGAGTTTTGC
TCCGAATCAACAGTCTCACCCCCCCACGCCCTCTTTCCCTTTCCCTCGCA
ATAATTTCTCGGATTTTACCTAATCTTTTCCGCGCCAAGGCGCCAAGTCC
CACTTCTGTTCTCGGGTCTTCGCGTCTGTAAAGCTCGAAATCGGCGTAGT
GCAGCCGAACTACGGCACCTATCTTCTATCAGATACATGTATACCTGGAA
GCACTCAGTCGCCAACACACCGGCAGACGCCGCGAGTATGCTGCATGACA
CCGCTCGACGTTCCCCATGAAGCCGTCCGGGTGAATGCTTTTACGTGAAG
TTTCGTTGAATCTAATGAAGCATTGTCTTCTTTGTGATCTATCCCTTCGT
TGTTGTTGTTGTTGTTGTTGTTTTACACCCTCTCGGTGGTAGGCTCTGGA
GGCAGGTATCGGTGTGGAGGCACCAGAACCCGTGATCCGTGCGCTCACTC
CGTCGCTCTCCTGCCCTCACCCAAGGACGGTCAATAAAGCAGCCGTTTTG
ATCAATAGGGCCCTGCTAAACATCGGAGTGGGAGACACGCCTAACGCCGG
GCTTGGCGAGGGACTACCGGCGGACCTTCTCCAGGCGCTACACGATGGAC
GCCGCGCTAAGCAAGCAGAGGGAAGGGCCGCCTGTAACGAGGCCCTGGCA
AGGTACGAGTCGATGCAATGTCTACGGTACTGTCGCGTTCGTCTCTATAT
GGCTGGGTGTTGGTTTGGTAGAGGCCAGTGTTGGTGTTGAGGCATGCAGC
AGGAACGTTGTATGGTGGTTCGTTCGCTGCAACCGAGCGTTGCATATAGC
AGTGTACTGCGCGGTTGGTATTTTACCGAGTACAAAAACACGCCCCCCTT
GCGAAAAACCACACAACCACGGCTGCAGTCGGTTTCGCTGATGATCAGGC
GTTGCTCGACGGCCTGCCTCCCCGACAGTAGAGCACGGCTTGGCCGAGAG
TATCTTGCCTTGATCTAGTTAGCCCAACCGTAAAAATATCTGGGCTGGTC
TATCGTAGCACACACAGATGGCGCAGGAGTCAGCAAGAAGACTTTGATCT
AGAGTTCGCTAGCAAGAATGCTGTATTATTTCGAAGCACATAGATGTGAC
CGCGGGGGGGGCAGAGCATGCAATCATATCGACGAGGAAACATTATTGGT
GTATGTTTTTCGTACGATGTGGCTTGGTGTTTTTGCAGAGAAGCCGGGGG
TTGACCGTGAACATAACAGTATGATTGTTAATTGAAGGACACGATTGGTC
ACAACCTACTGTTAATGCTGTGCCCAGCCGTTCTCAGGCTCTTGGTTTTG
GAGCGATAGGGATTAATCCAATGTCCTCGTTCTCTTGGTTGGTGTTGACA
TGGCGTGCTTCAGCATGTTCGGCCTCGAAAAGTAGAGGGTAATGTGAAAT
GTTGACCCAACGCTCGTCTACCTCAGACTGGAACCCTCTTACCGGGCGCA
TTTCGAACTTGCCGCGTCATGGTTTTTCGTTGTCCGCTGCACGTGTATAC
TAGGTGCCAGCTAGCGATGGGGGAAGCCTCTTTCCGCGACGCACTCGCCA
CGTTTACGGATACAGCAACAGCAGCGCGTGTGGCCGAGGCCGTCAAGGTC
GGCACCGCAGCAGGTGCTCGTGGAGCGAGCCTAGGGGCGAGCGCGGGTCG
TTCTGGAAGGCTTAAGGCGGCGATGAAGGCGAAGAAGAAGGATGGGACGA
CTATCAAGGAGGGCGGGGAGTGGGAGTGTACGGTATAAAGGTCGATGGGC
GAGAGCGGAAGGGCAAGCGCGGGATTGGATCAGGAGACTCGGGATACTCG
TGAGCTGGGCGAACGAGAGGACAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3961:4598..8974-

>mRNA_H-paniculata_contig3961.10284.1 ID=mRNA_H-paniculata_contig3961.10284.1|Name=mRNA_H-paniculata_contig3961.10284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig3961:4598..8974- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGGATGCTAGGAAACATGGGGGCACAGCTCGCAGCTGGCGAGCAC
ATTGAAGGTATCGTAGTCGACATGGCGGGGCACCTGCGGGCGAGGGGCTT
CATGGCAACCGAGGCCGAGAAGAAACATGGGGGCACAGCTCGCAGCTGGC
GAGCACATTGAAGGTATCGTAGTCGACATGGCGGGGCACCTGCGGGCGAG
GGGCTTCATGGCAACCGAGGCCGAGAAGGCTCTGGAGGCAGGTATCGGTG
TGGAGGCACCAGAACCCGTGATCCGTGCGCTCACTCCGTCGCTCTCCTGC
CCTCACCCAAGGACGGTCAATAAAGCAGCCGTTTTGATCAATAGGGCCCT
GCTAAACATCGGAGTGGGAGACACGCCTAACGCCGGGCTTGGCGAGGGAC
TACCGGCGGACCTTCTCCAGGCGCTACACGATGGACGCCGCGCTAAGCAA
GCAGAGGGAAGGGCCGCCTGTAACGAGGCCCTGGCAAGGCTCTGGAGGCA
GGTATCGGTGTGGAGGCACCAGAACCCGTGATCCGTGCGCTCACTCCGTC
GCTCTCCTGCCCTCACCCAAGGACGGTCAATAAAGCAGCCGTTTTGATCA
ATAGGGCCCTGCTAAACATCGGAGTGGGAGACACGCCTAACGCCGGGCTT
GGCGAGGGACTACCGGCGGACCTTCTCCAGGCGCTACACGATGGACGCCG
CGCTAAGCAAGCAGAGGGAAGGGCCGCCTGTAACGAGGCCCTGGCAAGGT
GCCAGCTAGCGATGGGGGAAGCCTCTTTCCGCGACGCACTCGCCACGTTT
ACGGATACAGCAACAGCAGCGCGTGTGGCCGAGGCCGTCAAGGTCGGCAC
CGCAGCAGGTGCTCGTGGAGCGAGCCTAGGGGCGAGCGCGGGTCGTTCTG
GAAGGCTTAAGGCGGCGATGAAGGCGAAGAAGAAGGATGGGACGACTATC
AAGGAGGGCGGGGAGTGGGAGTGTACGGTATAAGTGCCAGCTAGCGATGG
GGGAAGCCTCTTTCCGCGACGCACTCGCCACGTTTACGGATACAGCAACA
GCAGCGCGTGTGGCCGAGGCCGTCAAGGTCGGCACCGCAGCAGGTGCTCG
TGGAGCGAGCCTAGGGGCGAGCGCGGGTCGTTCTGGAAGGCTTAAGGCGG
CGATGAAGGCGAAGAAGAAGGATGGGACGACTATCAAGGAGGGCGGGGAG
TGGGAGTGTACGGTATAA
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