mRNA_H-paniculata_contig39602.10283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39602.10283.1
Unique NamemRNA_H-paniculata_contig39602.10283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A7S1B139_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1B139_NOCSC)

HSP 1 Score: 74.3 bits (181), Expect = 5.420e-13
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   34 LRGSEVNAFLGKLQAWCPHEPCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFG-NFDLW 462
            L+ S  + F   L++W P E    +LLYRA+ DGF+ASSFH +CD    TL +V     R  + + GGY++ SWS +T++Y + S++ F+FSL N  D    R             PI    R  AI  H   GP FG   DL+
Sbjct:    8 LQQSLFDQFASTLESWLP-ESAAPRLLYRATRDGFEASSFHHRCDGLGPTLVVV-----RSAQHVFGGYSEVSWS-STSSYTS-STESFVFSLVNPLDLPPMR------------LPIKAGGRDKAIYGHPAYGPTFGCGHDLY 131          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: D2VCC1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCC1_NAEGR)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-10
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   94 PCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQAT-ATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAK-----YPIDDRARQFAIICHATEGPRFG 447
            P  LKL+++AS DGF A +FH+KCD   ST+ +VK  +G    ++ GGY   SW+  T A +P+ S+  F+FSL +  DK+       + F +  +     + I D + Q++I  +   GP FG
Sbjct:  203 PNGLKLIFKASRDGFSAQAFHSKCDNKGSTVVIVKAKTG----AVFGGYTSISWTSTTGAFFPDKSA--FLFSLVSA-DKV-------ERFTKLTQQYGYYFKIGDNSSQYSIYHNPQYGPAFG 312          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.370e-10
Identity = 53/145 (36.55%), Postives = 70/145 (48.28%), Query Frame = 1
Query:   46 EVNAFLGKLQAWCPHEPCNLKLLYRASVDGFDASSFHAKC-DRSTSTLTLVKVDSGRGCESIVGGYADTSWS-QATATYPNNSSKG-FIFSLKNGTDKINARDADDDMFPRAAKYPID----DRARQFAIICHATEGPRFGNFDL 459
            EV      LQ WCP  P  ++LLYRAS DG+    FHA C + S +T+TL++V +    +SIVGG++   WS  A       SS G FIF LK           D DM    +  P+     D      ++  A+ GP FG  DL
Sbjct:  166 EVGELTATLQGWCPGNPNTMRLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGAS---QSIVGGFSSVPWSPHAYGGDSIMSSLGAFIFMLK-----------DSDMGGPNSFQPVKWGKRDNNGGCDVVVGASRGPYFGRTDL 296          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: UPI000F553E58 (uncharacterized protein LOC113672820 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F553E58)

HSP 1 Score: 67.4 bits (163), Expect = 2.490e-10
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   70 LQAWCPHEPCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFGN-FDLW 462
            L  W P +    +LL RAS DGF A +FH+KCD    T+T+VK  SG     I GG+ +TSWS          S+ F+FS+ N                 A+K P+  + +  AI C ++ GP FG  FDL+
Sbjct:  171 LSGWLPQQDGKWQLLMRASQDGFQAKTFHSKCDDKGPTVTIVK--SGNN---IFGGFTETSWSSQGCYV--RCSQSFLFSMVNPQGMA------------ASKMPLV-KNQHNAIYCGSSYGPTFGGGFDLY 282          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A3M6UM64_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UM64_POCDA)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-10
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   70 LQAWCPHEPCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFGN-FDLW 462
            L  W P +    +LL RAS DGF A +FH+KCD    T+T+VK  SG     I GG+ +TSWS          S+ F+FS+ N                 A+K P+  + +  AI C ++ GP FG  FDL+
Sbjct:  320 LSGWLPQQDGKWQLLMRASQDGFQAKTFHSKCDDKGPTVTIVK--SGNN---IFGGFTETSWSSQGCYV--RCSQSFLFSMVNPQGMA------------ASKMPLV-KNQHNAIYCGSSYGPTFGGGFDLY 431          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A7S4UYD9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UYD9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.870e-10
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   64 GKLQAWCPHEPC--NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLK 315
            G ++ W   + C  ++KLLYRAS DG+ +S+FH KCD    TLT+++   G     I GG+ DT+WS        +S K F+++L+
Sbjct:    8 GHIKGWLDEDGCGSDMKLLYRASRDGWGSSNFHEKCDHQGPTLTVIRCTGGY----IFGGFCDTAWSSDGGC--KSSPKAFVYTLR 87          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: UPI000644E9DF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E9DF)

HSP 1 Score: 66.2 bits (160), Expect = 5.780e-10
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   79 WCPHEPCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKN 318
            WC ++   +KL+YRA+ DGF AS FH KCD +  T++++K   G    SI GG  DT+WS  +A         F+FSL N
Sbjct:  151 WCNNKYSKMKLMYRATRDGFGASMFHQKCDNNGPTVSIIKSTDG----SIFGGKTDTNWSSPSAGTYGVDPNAFLFSLVN 226          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A397HHM3_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HHM3_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 6.200e-10
Identity = 44/120 (36.67%), Postives = 58/120 (48.33%), Query Frame = 1
Query:  100 NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFGNFDL 459
            + K+L R S DGFDA++FHA+CDR   T+ +VK+D   G   I+GGY    W       P  S K FIFSL +G +                   + D A   A+  H + GP FG  DL
Sbjct:  341 DFKILVRGSRDGFDATTFHARCDRKGPTVVVVKID---GTGEILGGYNAAFWRTGAVYIP--SDKSFIFSLGDGKN-----------LQEVQLSRVRDSAS--AMYGHTSYGPHFGTADL 442          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A7S4QY19_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY19_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.080e-10
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   64 GKLQAWCPHEPC--NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLK 315
            G ++ W   + C  ++KLLYRAS DG+ +S+FH KCD    TLT+++   G     I GG+ DT+WS        +S K F+++L+
Sbjct:    8 GHIKGWLDEDGCGSDMKLLYRASRDGWGSSNFHEKCDHQGPTLTVIRCTGGY----IFGGFCDTAWSSDGGC--KSSPKAFVYTLR 87          
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Match: A0A3M7T9B4_BRAPC (Tldc domain-containing n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T9B4_BRAPC)

HSP 1 Score: 66.6 bits (161), Expect = 7.250e-10
Identity = 44/132 (33.33%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   64 GKLQAWCPHEPCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGFIFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFGNFDL 459
            GK Q W        KLLYR S DGF+A SFH KCD   +TLT+V+ D+ +    I GG+  ++WS  +  + ++    F+FSL   ++        D+               ++AI C    GP FGN D+
Sbjct:  783 GKFQNW--------KLLYRGSRDGFEACSFHKKCDTHPNTLTIVRTDTLK----IFGGFTGSTWSSDSNEFKSDP-YAFLFSLATNSNNSQIIKCSDE---------------KYAIYCDKDFGPCFGNGDI 886          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39602.10283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1B139_NOCSC5.420e-1337.50Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
D2VCC1_NAEGR1.110e-1035.48Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
D7G2H5_ECTSI1.370e-1036.55TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI000F553E582.490e-1036.36uncharacterized protein LOC113672820 n=1 Tax=Pocil... [more]
A0A3M6UM64_POCDA3.800e-1036.36Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A7S4UYD9_9STRA3.870e-1038.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI000644E9DF5.780e-1042.50hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A397HHM3_9GLOM6.200e-1036.67Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A7S4QY19_9STRA7.080e-1038.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A3M7T9B4_BRAPC7.250e-1033.33Tldc domain-containing n=1 Tax=Brachionus plicatil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39602contigH-paniculata_contig39602:1319..1843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.9e-09
Seed eggNOG ortholog588596.U9STN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TLD
EggNOG OGs29X5G@1,2RXR4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930213.1405277-CDS-H-paniculata_contig39602:1318..14951622930213.1405277-CDS-H-paniculata_contig39602:1318..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39602 1319..1495 -
1691481193.6244078-CDS-H-paniculata_contig39602:1318..14951691481193.6244078-CDS-H-paniculata_contig39602:1318..1495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39602 1319..1495 -
1622930213.1575403-CDS-H-paniculata_contig39602:1558..18431622930213.1575403-CDS-H-paniculata_contig39602:1558..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39602 1559..1843 -
1691481193.6437025-CDS-H-paniculata_contig39602:1558..18431691481193.6437025-CDS-H-paniculata_contig39602:1558..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39602 1559..1843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39602.10283.1prot_H-paniculata_contig39602.10283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39602 1319..1843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39602.10283.1

>prot_H-paniculata_contig39602.10283.1 ID=prot_H-paniculata_contig39602.10283.1|Name=mRNA_H-paniculata_contig39602.10283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
LTAQHDVDSGILRGSEVNAFLGKLQAWCPHEPCNLKLLYRASVDGFDASS
FHAKCDRSTSTLTLVKVDSGRGCESIVGGYADTSWSQATATYPNNSSKGF
IFSLKNGTDKINARDADDDMFPRAAKYPIDDRARQFAIICHATEGPRFGN
FDLW
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mRNA from alignment at H-paniculata_contig39602:1319..1843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39602.10283.1 ID=mRNA_H-paniculata_contig39602.10283.1|Name=mRNA_H-paniculata_contig39602.10283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at H-paniculata_contig39602:1319..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACAGCCCAGCACGACGTTGACAGCGGAATTTTGAGAGGCTCGGAAGT TAATGCCTTTCTCGGAAAGCTTCAAGCATGGTGCCCTCATGAGCCTTGCA ATCTGAAATTGCTCTACCGTGCGTCGGTGGATGGATTCGATGCCTCATCG TTCCATGCTAAGTGCGATCGTTCGACGTCAACGCTGACTCTAGTCAAGGT TGACAGCGGGCGAGGGTGTGAAAGCATCGTTGGAGGATATGCCGACACCT CTTGGTCACAGGCCACGGCCACTTACCCTAACAATGTATATGTGAACGGA GAACGCGCCAATGCCGTTCAGTTTTCGGGGTACTCCTTTTACAAGGAGTC CTCAAAAGGGTTCATATTCTCGCTCAAGAACGGCACTGACAAAATAAATG CAAGGGACGCGGACGATGACATGTTTCCACGTGCTGCGAAGTACCCCATC GATGATCGAGCTAGGCAGTTTGCCATCATTTGTCACGCAACCGAGGGACC CAGGTTCGGCAACTTCGACTTGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig39602:1319..1843-

>mRNA_H-paniculata_contig39602.10283.1 ID=mRNA_H-paniculata_contig39602.10283.1|Name=mRNA_H-paniculata_contig39602.10283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig39602:1319..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGACAGCCCAGCACGACGTTGACAGCGGAATTTTGAGAGGCTCGGAAGT
TAATGCCTTTCTCGGAAAGCTTCAAGCATGGTGCCCTCATGAGCCTTGCA
ATCTGAAATTGCTCTACCGTGCGTCGGTGGATGGATTCGATGCCTCATCG
TTCCATGCTAAGTGCGATCGTTCGACGTCAACGCTGACTCTAGTCAAGGT
TGACAGCGGGCGAGGGTGTGAAAGCATCGTTGGAGGATATGCCGACACCT
CTTGGTCACAGGCCACGGCCACTTACCCTAACAATTTGACAGCCCAGCAC
GACGTTGACAGCGGAATTTTGAGAGGCTCGGAAGTTAATGCCTTTCTCGG
AAAGCTTCAAGCATGGTGCCCTCATGAGCCTTGCAATCTGAAATTGCTCT
ACCGTGCGTCGGTGGATGGATTCGATGCCTCATCGTTCCATGCTAAGTGC
GATCGTTCGACGTCAACGCTGACTCTAGTCAAGGTTGACAGCGGGCGAGG
GTGTGAAAGCATCGTTGGAGGATATGCCGACACCTCTTGGTCACAGGCCA
CGGCCACTTACCCTAACAATTCCTCAAAAGGGTTCATATTCTCGCTCAAG
AACGGCACTGACAAAATAAATGCAAGGGACGCGGACGATGACATGTTTCC
ACGTGCTGCGAAGTACCCCATCGATGATCGAGCTAGGCAGTTTGCCATCA
TTTGTCACGCAACCGAGGGACCCAGGTTCGGCAACTTCGACTTGTGGTCC
TCAAAAGGGTTCATATTCTCGCTCAAGAACGGCACTGACAAAATAAATGC
AAGGGACGCGGACGATGACATGTTTCCACGTGCTGCGAAGTACCCCATCG
ATGATCGAGCTAGGCAGTTTGCCATCATTTGTCACGCAACCGAGGGACCC
AGGTTCGGCAACTTCGACTTGTGG
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