mRNA_H-paniculata_contig39599.10279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39599.10279.1
Unique NamemRNA_H-paniculata_contig39599.10279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39599.10279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39599contigH-paniculata_contig39599:899..1873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size975
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39599.10279.1prot_H-paniculata_contig39599.10279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39599 1081..1587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930212.2083817-UTR-H-paniculata_contig39599:898..10801622930212.2083817-UTR-H-paniculata_contig39599:898..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39599 899..1080 +
1691481193.0918787-UTR-H-paniculata_contig39599:898..10801691481193.0918787-UTR-H-paniculata_contig39599:898..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39599 899..1080 +
1622930212.241275-UTR-H-paniculata_contig39599:1587..18731622930212.241275-UTR-H-paniculata_contig39599:1587..1873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39599 1588..1873 +
1691481193.1075253-UTR-H-paniculata_contig39599:1587..18731691481193.1075253-UTR-H-paniculata_contig39599:1587..1873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig39599 1588..1873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930212.2259042-CDS-H-paniculata_contig39599:1080..15871622930212.2259042-CDS-H-paniculata_contig39599:1080..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39599 1081..1587 +
1691481193.1000564-CDS-H-paniculata_contig39599:1080..15871691481193.1000564-CDS-H-paniculata_contig39599:1080..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39599 1081..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39599.10279.1

>prot_H-paniculata_contig39599.10279.1 ID=prot_H-paniculata_contig39599.10279.1|Name=mRNA_H-paniculata_contig39599.10279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MKSFVVYIFAAWHRVCAIYRGFFLLFFVPFFTCMGTDCPLSILCNSASHW
EGCYNHIFLFFFPLFYFSLLPPRTIGVAPVRNHCWLRMQDMCRLFRSTCA
WRSGVHGTVGVVRWKLDIHSWTYKHSNREVGGSVRICSYDNDSWTSTALA
GVRDSCCVLKITLVRFRV*
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mRNA from alignment at H-paniculata_contig39599:899..1873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39599.10279.1 ID=mRNA_H-paniculata_contig39599.10279.1|Name=mRNA_H-paniculata_contig39599.10279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig39599:899..1873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAAGGGGGATCAGTCACTCATTATGTGGTTTTTTATCAGGCACAAA
GACCGAAAAATGAGGTCGAGGGACTCTTGGGGCAGTCGCTTCCTGTAGGT
ATTTTCTGTCGTTTTTGTTTGACGATGCGTATTGTGCGATTCTTTCGCAC
CTAGAGTTGGACAACAGTGGCGTACCTAGTAAATGAAATCGTTTGTAGTG
TATATTTTTGCAGCATGGCATAGGGTCTGTGCTATTTATCGGGGTTTTTT
TCTTCTATTTTTTGTGCCATTTTTTACATGCATGGGGACCGACTGCCCGT
TAAGTATTTTGTGCAACAGTGCGTCCCATTGGGAAGGATGCTACAACCAC
ATTTTTTTATTTTTTTTTCCCCTTTTTTACTTCTCGTTATTGCCCCCACG
AACAATTGGTGTTGCACCAGTAAGGAATCATTGCTGGCTACGCATGCAAG
ATATGTGTCGGTTATTTCGCTCGACGTGCGCGTGGCGTAGTGGTGTACAT
GGAACAGTCGGTGTTGTGAGATGGAAATTGGACATTCATTCTTGGACGTA
TAAGCACTCGAACCGTGAGGTGGGGGGTTCGGTGCGTATTTGCTCGTATG
ATAACGACAGCTGGACAAGCACGGCGCTCGCAGGCGTGCGTGATTCGTGC
TGTGTACTGAAAATTACATTGGTAAGATTCAGGGTGTAACTTCACAATCA
GAGTGCAATCGTAAAAGATGCGTAGACCTCGCACAGAGCAGTCAGCTTGA
AGATTTGGACTTGAAGGCCCCGACCTATGCGGTCCCGCCGATACTCTTTG
TTGGGTGAGTCAGACTCTCCGATCAAAAGTTGTTGTCATTTAAAAACTTG
TACCAGCGCCATGCACACGATTAAGCGATTTCAAGCTTTCAGAATGGGTG
AAATTGTTCTGTTTTTCAGTCTTAACGTAGCAATACTTCAACCAGGAGCA
TTTTTTTTTTTTTTTTTAACCCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig39599:899..1873+

>mRNA_H-paniculata_contig39599.10279.1 ID=mRNA_H-paniculata_contig39599.10279.1|Name=mRNA_H-paniculata_contig39599.10279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig39599:899..1873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATCGTTTGTAGTGTATATTTTTGCAGCATGGCATAGGGTCTGTGC
TATTTATCGGGGTTTTTTTCTTCTATTTTTTGTGCCATTTTTTACATGCA
TGGGGACCGACTGCCCGTTAAGTATTTTGTGCAACAGTGCGTCCCATTGG
GAAGGATGCTACAACCACATTTTTTTATTTTTTTTTCCCCTTTTTTACTT
CTCGTTATTGCCCCCACGAACAATTGGTGTTGCACCAGTAAGGAATCATT
GCTGGCTACGCATGCAAGATATGTGTCGGTTATTTCGCTCGACGTGCGCG
TGGCGTAGTGGTGTACATGGAACAGTCGGTGTTGTGAGATGGAAATTGGA
CATTCATTCTTGGACGTATAAGCACTCGAACCGTGAGGTGGGGGGTTCGG
TGCGTATTTGCTCGTATGATAACGACAGCTGGACAAGCACGGCGCTCGCA
GGCGTGCGTGATTCGTGCTGTGTACTGAAAATTACATTGGTAAGATTCAG
GGTGTAAATGAAATCGTTTGTAGTGTATATTTTTGCAGCATGGCATAGGG
TCTGTGCTATTTATCGGGGTTTTTTTCTTCTATTTTTTGTGCCATTTTTT
ACATGCATGGGGACCGACTGCCCGTTAAGTATTTTGTGCAACAGTGCGTC
CCATTGGGAAGGATGCTACAACCACATTTTTTTATTTTTTTTTCCCCTTT
TTTACTTCTCGTTATTGCCCCCACGAACAATTGGTGTTGCACCAGTAAGG
AATCATTGCTGGCTACGCATGCAAGATATGTGTCGGTTATTTCGCTCGAC
GTGCGCGTGGCGTAGTGGTGTACATGGAACAGTCGGTGTTGTGAGATGGA
AATTGGACATTCATTCTTGGACGTATAAGCACTCGAACCGTGAGGTGGGG
GGTTCGGTGCGTATTTGCTCGTATGATAACGACAGCTGGACAAGCACGGC
GCTCGCAGGCGTGCGTGATTCGTGCTGTGTACTGAAAATTACATTGGTAA
GATTCAGGGTGTAA
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