mRNA_H-paniculata_contig3950.10261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3950.10261.1
Unique NamemRNA_H-paniculata_contig3950.10261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3950.10261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3950contigH-paniculata_contig3950:6395..6802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3950.10261.1prot_H-paniculata_contig3950.10261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3950 6408..6710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.4139993-UTR-H-paniculata_contig3950:6394..64071622930210.4139993-UTR-H-paniculata_contig3950:6394..6407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3950 6395..6407 +
1691481192.3459888-UTR-H-paniculata_contig3950:6394..64071691481192.3459888-UTR-H-paniculata_contig3950:6394..6407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3950 6395..6407 +
1622930210.4391267-UTR-H-paniculata_contig3950:6710..68021622930210.4391267-UTR-H-paniculata_contig3950:6710..6802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3950 6711..6802 +
1691481192.362745-UTR-H-paniculata_contig3950:6710..68021691481192.362745-UTR-H-paniculata_contig3950:6710..6802Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3950 6711..6802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.427744-CDS-H-paniculata_contig3950:6407..67101622930210.427744-CDS-H-paniculata_contig3950:6407..6710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3950 6408..6710 +
1691481192.3544726-CDS-H-paniculata_contig3950:6407..67101691481192.3544726-CDS-H-paniculata_contig3950:6407..6710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3950 6408..6710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3950.10261.1

>prot_H-paniculata_contig3950.10261.1 ID=prot_H-paniculata_contig3950.10261.1|Name=mRNA_H-paniculata_contig3950.10261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MKTFLAPIPFKSHQNPHLKILKKHVIFFFLTNTYDIIVKIPPRPLWRQDC
QIHILFRNSVRPQGGVIQSDADGLLSRVVAITMVRRLLSANASVKSKKIG
*
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mRNA from alignment at H-paniculata_contig3950:6395..6802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3950.10261.1 ID=mRNA_H-paniculata_contig3950.10261.1|Name=mRNA_H-paniculata_contig3950.10261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig3950:6395..6802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTTGGCGTTTATGAAAACATTTCTGGCGCCGATACCCTTCAAGTCTC
ATCAAAATCCTCACCTGAAAATATTGAAAAAACACGTCATATTTTTTTTC
TTGACAAACACCTACGACATAATTGTGAAGATCCCCCCCCGTCCTCTTTG
GCGGCAAGACTGTCAGATACATATTTTGTTCCGAAATAGCGTCCGGCCCC
AGGGGGGAGTAATTCAAAGCGATGCGGACGGTTTGCTCTCTCGCGTGGTG
GCTATTACGATGGTCCGACGGCTGCTTTCGGCAAACGCCTCTGTGAAATC
GAAGAAAATAGGTTAAACACCGATTTCAGAAGATTCAAATAACCGCGGGT
CAAGTACGTGACTTCTAAAACCAAACTTTCACAAACTCAAGATACTGCTG
CGACGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3950:6395..6802+

>mRNA_H-paniculata_contig3950.10261.1 ID=mRNA_H-paniculata_contig3950.10261.1|Name=mRNA_H-paniculata_contig3950.10261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig3950:6395..6802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAACATTTCTGGCGCCGATACCCTTCAAGTCTCATCAAAATCCTCA
CCTGAAAATATTGAAAAAACACGTCATATTTTTTTTCTTGACAAACACCT
ACGACATAATTGTGAAGATCCCCCCCCGTCCTCTTTGGCGGCAAGACTGT
CAGATACATATTTTGTTCCGAAATAGCGTCCGGCCCCAGGGGGGAGTAAT
TCAAAGCGATGCGGACGGTTTGCTCTCTCGCGTGGTGGCTATTACGATGG
TCCGACGGCTGCTTTCGGCAAACGCCTCTGTGAAATCGAAGAAAATAGGT
TAAATGAAAACATTTCTGGCGCCGATACCCTTCAAGTCTCATCAAAATCC
TCACCTGAAAATATTGAAAAAACACGTCATATTTTTTTTCTTGACAAACA
CCTACGACATAATTGTGAAGATCCCCCCCCGTCCTCTTTGGCGGCAAGAC
TGTCAGATACATATTTTGTTCCGAAATAGCGTCCGGCCCCAGGGGGGAGT
AATTCAAAGCGATGCGGACGGTTTGCTCTCTCGCGTGGTGGCTATTACGA
TGGTCCGACGGCTGCTTTCGGCAAACGCCTCTGTGAAATCGAAGAAAATA
GGTTAA
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