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Homology
BLAST of mRNA_H-paniculata_contig3915.10192.1 vs. uniprot
Match: D7G625_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G625_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 7.470e-19 Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 727 RWRTKALYCLLGVYGIRIAGRVVDKIRNSFLSSSDIILDAEDRDLANRGAVLDVEGQALLLRLRALARPSSNSNA 951
RWR KA+Y L+GVYG+R+AGRVV +++ + LS DIILDAED++L NRGAVLD EGQA++LRLR L +P++ S A
Sbjct: 169 RWRKKAVYFLVGVYGLRLAGRVVARVKANALSGGDIILDAEDQNLLNRGAVLDTEGQAIILRLRELGQPAATSAA 243
BLAST of mRNA_H-paniculata_contig3915.10192.1 vs. uniprot
Match: A0A6H5L1C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C8_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 3.350e-18 Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 727 RWRTKALYCLLGVYGIRIAGRVVDKIRNSFLSSSDIILDAEDRDLANRGAVLDVEGQALLLRLRALARPSSNSNA 951
RWR KA+Y L+GVYG+R+AGRVV +++ + LS DIILDAED++L NRGAVLD EGQA++LRLR L P++ S A
Sbjct: 264 RWRKKAVYFLVGVYGLRLAGRVVARVKANALSVGDIILDAEDQNLLNRGAVLDTEGQAIILRLRELGPPAATSAA 338
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.2 |
| Seed ortholog evalue | 1.8e-07 |
| Seed eggNOG ortholog | 2880.D7G625 |
| KEGG ko | ko:K18158 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805 |
| EggNOG free text desc. | Nuclear control of ATPase protein |
| EggNOG OGs | 28M9W@1,2QQIS@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03029 |
| Exons | 4 |
| Model size | 969 |
| Cds size | 672 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3915.10192.1 >prot_H-paniculata_contig3915.10192.1 ID=prot_H-paniculata_contig3915.10192.1|Name=mRNA_H-paniculata_contig3915.10192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MAPGATTAAVIALSFGCLCEPGVCVVGPPARNRSGPQLARRHDFQQGKLS
AFFGPFRPSDEELRWYRKAFLGVDSSATLAPANATSLEENKGAEASQGLL
GSLGIIRLSSVLGVAKDSGSRTILAGAAKALQLGREGGVWLHRRCGGSQG
GFGGWILRFQLLGVLLLGFNTTNRQFPRGLALFRASSCAVWQMAHEGAVL
PARCVRHSNSGACGGQDKKQLSF* back to topmRNA from alignment at H-paniculata_contig3915:11346..15663+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3915.10192.1 ID=mRNA_H-paniculata_contig3915.10192.1|Name=mRNA_H-paniculata_contig3915.10192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4318bp|location=Sequence derived from alignment at H-paniculata_contig3915:11346..15663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCTGGTGACATACATACCTCTGGCGTTACGATTGGGGGTTATTTGAT
AACATGTAACGGCCGACCGTAACTGTAACGTCAAAACCGAAGGACGGCAT
AGGGTACGTGTAGTACCGCAAGGTTCGGCCTACTCTCTAAATTTGGACCA
CAATGGCGCCGGGAGCGACAACTGCTGCGGTCATCGCGCTGTCCTTTGGG
TGCTTATGCGAACCGGGAGTATGTGTCGTGGGGCCTCCGGCACGGAATCG
CTCGGGTCCACAGCTTGCCCGGAGACACGACTTTCAACAGGTGACGGACT
GACTGACCCACCATGATGAGATTTGAAAGACAACAGTACCTACAGTGATG
TTGAACATTTGAATGTTCAAGTACTTCATCTTACAGCTTCTCAAAAGATA
CGGCAAGCTGGACGAACGGTATGTGCAGTGTTTCGGCATGTGAATAGCAT
GAACACCGCAGATGGGGTAATTATTGCTCATTCATACATACTCGGCTGAA
ATCGAGACAAAGTGGTGCTTCTGTTGCAACCAAATTTGCGAGATCGTGTG
CTGAGAAGAGCATGAATGTATAATGGTTTATGAAACTGTGGAAGGAGGGA
AAAGCCAACCATACCTGCCGCAGGCTGTGTCTATTGGTCGAGAAACGTTG
TGTTTTCAACAGTAAAAGGATCATCGTTGAAACGAGCTCGCGATAGTTTC
ATTGCATTCGGAAACAGTTAGGATTACCTCGGGTACAGTCGCTCGGTCTC
TCGACGATTGCGTGTAGTTTTGAATTTGACAGCCAGCTGTTTAGTTTTTC
TTTCGTCGCGGACCAGTTCTCTGATCGGAACCCGTGATCCGAAGCTTGGA
GTAAAACGCCTCGGTTCTTGCCGTATATTTTCCCTTGATTGGTGCAGTAG
CCAGTGCTACCTGACTGCAGCGTGCGTTGAAAATGACAAATGCAGTATGA
TTTTGAAGGCAAAAAAGGCCAACATTGCCAGAAGCCGTTCTTTTTGTCGT
GACAACAATTTGTGCACGTAGCTGGCACGAAAAAGACAGATAGCGGGCTG
TGACAGCACTGAGACCAGGCTGATACCGTCACCGCTGTGGGAGCGATGAT
TGAGTGCAGCGCAAGAAACGCCAAGTCACGTGTAACAGCGAAAACAATCA
GCTCCGTAGCTTCTCTCACACGAATTTTGAGTAGAGTTCGTTGTGGATTT
CGATCATATGTGCCACGGCGCGCCGAGTAGGCAGAAAAGAAAGGGCGCTG
CGGCACCATACAAATCTCAGGTCCAGATGCCCACTGGTTTGACAGCATAT
CGTTGAGTATAGCTCTCGAAATTCGGGAAACAGTATTCCAAGAGTGTAAC
AACAAACTCAGATAGTATTTTTGGTTTTGGACCCCTCTCAAATTTCGTAC
ACCTTTGATTTCATAGTGATCGATTAGGAGAGGTAAGCACGCGACAACTG
ACAGTACTGTACATCAGAACCATCACCTGTCAAAGGCAGCTTGTAGACGA
GACCTTCTCTCATTTGACTTCACGACAACATCATGAACGTGTGCACGCTT
CAGACGTGTTATCCACATACGATGATAGCTCTACGGAGAGTGACCCCTAG
CCCTTGACATGCAGACTGCAAATTTCAGCCAAACGTGAAATTGGAAGTTG
CACATTTGACGTGGCAGACACTATTTTTTAGCACCAGACGCTCAACACAA
ATTGCCAACCAGTGAGATAGCCGTACACTTCCTTGCGGCTATCATTAGAA
CACTTCATCGACAAGCAATACTTCCACGCTTCCAAAACGTTTTCTACGTC
CACTTCACGTCGTGTGTACCGTCTGAAATTTGATACTTGCTCCCTAAAAA
AGAGCTGCTGGGAATGACCCTGAATTAGAAATTTCTTCCATGCGGAAAGA
CTTGTTGGGAATATCTACACATCTACAAGTGGTCGGACCGCGAACAATCA
GTACAGATAGTGGCCAATATCTCTTCCTGGAATCACTCGGCGCGTCATTA
ACAGAGTTAAGTAAAGCCAATTCAAGCCGTAGATGTCCTCCGGGCTGATA
GGTACAGCTTGCGGTAGACGGAGCACTCTGCCATGTTAGTCCGATGACCA
TCTCCCTGCTTTCGCCCGTCGCGCTTGCCCATGAAGCCCTGCGACTTACG
CGCGACAGCGCTGCGCGCTAGCGCGCTAGAGCACGATGATATGGTCACAG
CGAAGACGAAGAATCCAGCGTGCTCGATCTATCGCCAGCTGCACCGATCC
ATCAGGAGAATATCTACGGTCTGGATTTCCGTAACTTCACTCCGTTGGTC
ACGCGTGAAGTAGGTCCACAAGGACAGGAAATCGCGCGCCAGCTGCGTAC
ACGATGCATTCAAGATACAGCAATTTTTTAAGTATCAGTTTGAGGGTGCA
CCGGCTACGAACGAAACAGATCAAGGACACGTTATTATTATAAAACCACG
AAACTGGCTGTTTTTGTCGGGCGACAATAACTGGTGGTCTAAACCGGATA
GCTTTGGCCGACACAACAAAAGCCAGGTGTACCGAGCTGAATCTGATAAA
AGAGGGCTCCCACGCTCCACAAAGACAGCACATGATAACTGCGGTACCTC
AGACTTGACCTCGATGTAATCACTTCGAGAAAATAGGGAAAAATTCTAAA
AATGAAATTTTCATGATGCGGTCGCCCGGGTACACATTCTGGCCTTACCC
GGGGATTCGCCTCTGGGCTCAATTCTAAGAGGGAATGACACAACTGCGTT
TGATAACAATGTAAGTTGACAGCATAGAACATAATTTGGTGTCTTCCGCC
GAGAAGGAAAAATCTGGTCTTGATGTGTGTACTGAGAACTCTTAATCGGG
TACGCGATGTGAGAGGCCAAACCCAGAGACAAAAACAGGGAGGGACAGGG
GTTGGGCCAGCCTATACACACCTCTACCGACGATAGGCTCTATTTCACAC
TGACCATACCATTTACGTTTTTAATATTCACGTGCAACAGCAACACCTTC
CCTCATATTGTCCTTTTCACCGCTCCTCTTCTGTTCATTCGCCACCCCAC
ATATTGCTCTGGCTAAACGGACACTACCTCAAAGGGTAAGCTTTCAGCCT
TCTTCGGACCCTTTAGACCTTCAGATGAAGAGCTGCGGTGGTACCGGAAG
GCCTTCCTCGGTGTTGACAGCTCCGCAACCTTAGCACCGGCAAATGCCAC
CTCTTTGGAGGAGAACAAGGGCGCCGAGGCATCGCAAGGGCTATTGGGCA
GCCTGGGGATAATCCGCCTGTCGAGTGTGCTTGGGGTAGCGAAGGATAGT
GGCTCAAGAACCATACTGGCGGGCGCAGCGAAGGCACTGCAGCTCGGGAG
AGAAGGGGGTGTTTGGTTGCACAGACGGTGCGGCGGCAGCCAGGGAGGGT
TCGGAGGATGGATATTGCGTTGTTTTGGTAGGGGTGATGGTGATGGCCGT
TGTCCTCGCGGGCGATTGCAGTAGTTGTGTTGGTGATGTTTGACTCTCGG
TCATTGACTGTTGGACCACGTGACCTATTGTAGCACACGGTACTCGCGTC
GCATCGTGCCATGCGTTTTGCATCATGCCGGCACTGTATCGTATCTACAC
TGCATCGTATCTACACTGCATCTCGCTTACCTGTACCGCACCGCACCAGG
CTTCCAGCTCCTTGGTGTACTGCTCTTGGGTTTCAACACAACAAATCGTC
AATTCCCGCGGGGGCTCGCTCTCTTTCGCGCGTCTTCGTGTGCGGTGTGG
CAGATGGCGCACGAAGGCGCTGTACTGCCTGCTCGGTGTGTACGGCATTC
GAATAGCGGGGCGTGTGGTGGACAAGATAAGAAACAGCTTTCTTTCTAGC
AGGTGTGCAAGGACCTCATACGATCAAACGTAAATGACACTGGCGGTTCA
TGTTTCCTCCTCCCTCTTCTTTTCCTGTCTACTTATCTCTCCCTATTTTA
ATTCTTTGTCCACGGCACATTTTGATATTACCAAGCCACGCATCAGTCGT
GTAACCAAACCCTCCATTCAACCGTGCATCCCTCGGAAGGAACCTACCGT
CAACAATTGGCTGCGGGTCAAAAGAGTTTAGTCTCCTTGATACTACTGCG
ATATTCACGTTTTATTCTACGACGTTCACGACCCCTCCCCCAACCGAGGT
CCCACTCCCGCAACGCTCCCTAACAGCGATATCATTCTGGACGCGGAGGA
TAGGGACCTAGCCAACCGGGGGGCGGTCCTTGATGTCGAGGGTCAGGCAT
TACTGCTCAGGCTTCGGGCCCTGGCGCGCCCATCTAGTAACAGCAATGCT
AGCACACTCAACCCCACT back to topCoding sequence (CDS) from alignment at H-paniculata_contig3915:11346..15663+ >mRNA_H-paniculata_contig3915.10192.1 ID=mRNA_H-paniculata_contig3915.10192.1|Name=mRNA_H-paniculata_contig3915.10192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig3915:11346..15663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGGGAGCGACAACTGCTGCGGTCATCGCGCTGTCCTTTGGGTG
CTTATGCGAACCGGGAGTATGTGTCGTGGGGCCTCCGGCACGGAATCGCT
CGGGTCCACAGCTTGCCCGGAGACACGACTTTCAACAGATGGCGCCGGGA
GCGACAACTGCTGCGGTCATCGCGCTGTCCTTTGGGTGCTTATGCGAACC
GGGAGTATGTGTCGTGGGGCCTCCGGCACGGAATCGCTCGGGTCCACAGC
TTGCCCGGAGACACGACTTTCAACAGGGTAAGCTTTCAGCCTTCTTCGGA
CCCTTTAGACCTTCAGATGAAGAGCTGCGGTGGTACCGGAAGGCCTTCCT
CGGTGTTGACAGCTCCGCAACCTTAGCACCGGCAAATGCCACCTCTTTGG
AGGAGAACAAGGGCGCCGAGGCATCGCAAGGGCTATTGGGCAGCCTGGGG
ATAATCCGCCTGTCGAGTGTGCTTGGGGTAGCGAAGGATAGTGGCTCAAG
AACCATACTGGCGGGCGCAGCGAAGGCACTGCAGCTCGGGAGAGAAGGGG
GTGTTTGGTTGCACAGACGGTGCGGCGGCAGCCAGGGAGGGTTCGGAGGA
TGGATATTGCGGTAAGCTTTCAGCCTTCTTCGGACCCTTTAGACCTTCAG
ATGAAGAGCTGCGGTGGTACCGGAAGGCCTTCCTCGGTGTTGACAGCTCC
GCAACCTTAGCACCGGCAAATGCCACCTCTTTGGAGGAGAACAAGGGCGC
CGAGGCATCGCAAGGGCTATTGGGCAGCCTGGGGATAATCCGCCTGTCGA
GTGTGCTTGGGGTAGCGAAGGATAGTGGCTCAAGAACCATACTGGCGGGC
GCAGCGAAGGCACTGCAGCTCGGGAGAGAAGGGGGTGTTTGGTTGCACAG
ACGGTGCGGCGGCAGCCAGGGAGGGTTCGGAGGATGGATATTGCGCTTCC
AGCTCCTTGGTGTACTGCTCTTGGGTTTCAACACAACAAATCGTCAATTC
CCGCGGGGGCTCGCTCTCTTTCGCGCGTCTTCGTGTGCGGTGTGGCAGAT
GGCGCACGAAGGCGCTGTACTGCCTGCTCGGTGTGTACGGCATTCGAATA
GCGGGGCGTGTGGTGGACAAGATAAGAAACAGCTTTCTTTCTAGGCTTCC
AGCTCCTTGGTGTACTGCTCTTGGGTTTCAACACAACAAATCGTCAATTC
CCGCGGGGGCTCGCTCTCTTTCGCGCGTCTTCGTGTGCGGTGTGGCAGAT
GGCGCACGAAGGCGCTGTACTGCCTGCTCGGTGTGTACGGCATTCGAATA
GCGGGGCGTGTGGTGGACAAGATAAGAAACAGCTTTCTTTCTAG back to top
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