mRNA_H-paniculata_contig39118.10186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39118.10186.1
Unique NamemRNA_H-paniculata_contig39118.10186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39118.10186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39118contigH-paniculata_contig39118:827..1647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930200.3688776-CDS-H-paniculata_contig39118:826..9581622930200.3688776-CDS-H-paniculata_contig39118:826..958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39118 827..958 +
1691481187.8895752-CDS-H-paniculata_contig39118:826..9581691481187.8895752-CDS-H-paniculata_contig39118:826..958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39118 827..958 +
1622930200.383463-CDS-H-paniculata_contig39118:1588..16451622930200.383463-CDS-H-paniculata_contig39118:1588..1645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39118 1589..1645 +
1691481187.89745-CDS-H-paniculata_contig39118:1588..16451691481187.89745-CDS-H-paniculata_contig39118:1588..1645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39118 1589..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39118.10186.1prot_H-paniculata_contig39118.10186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39118 827..1645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39118.10186.1

>prot_H-paniculata_contig39118.10186.1 ID=prot_H-paniculata_contig39118.10186.1|Name=mRNA_H-paniculata_contig39118.10186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
RTWHKLAVDDIEMATVTTAWQRFQGESRGNMETVIQSTVQQIVKVQRSLE
REDSWDVRFNRRS
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mRNA from alignment at H-paniculata_contig39118:827..1647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39118.10186.1 ID=mRNA_H-paniculata_contig39118.10186.1|Name=mRNA_H-paniculata_contig39118.10186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig39118:827..1647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGTGGCACAAGCTCGCAGTAGACGATATCGAGATGGCAACAGTGAC
CACAGCATGGCAGCGCTTCCAAGGAGAAAGTCGCGGAAACATGGAAACGG
TCATCCAGTCAACAGTACAGCAGATCGTAAAGGTACACCGCACCGTTTGC
CATTGGATGTCACGGGGTGGAGGGGGACGGGCGACGGTAGTCATATCTGC
ATGCCTGTAATAAGTTCTGTGTGGAACACTTGTATGCTCACGTAGGATCC
TCACAAAGGTGCGACCTTGTTCACAAATTGTAGCATAACAGTCAACCTGT
GTGTTCAGAACTCTTATGTAGCTTCTGTAGAGATAACTGAACAGTGGAGA
GCATGAACGTCCCAAGCGACAAATTTCTTACTTACGATCATACCCGTCAG
AAGGGTACAAGAAGCCCATCATATCATGCATGCACTATTCAGTCCGTCGT
TAACATAATGTGGGGTGGTCGTTATTGGTGTTTACGTGCGCAGTCGACCG
TTGAAAACTTTTGCACGATATGGCACACTATTTCATGAGTACATCCGCCC
TCTATCTCTTACCCCTTCCTCAAAACCCAAGGTCTGCTGTGATACCTTTC
ACGTCCTTCTATTCGATGTTGTGTAGAGATAAGAGTATTAGTCGCTTCCA
TTTATCGGTAACATACGTTTCATGACAAATATCGAACTAAACCTCGAAAG
ATTTTCCTGCCCCCTCCCGCCCACTTCCTGCCCCCACACGCGCACCTATC
CACCTACCCCAGGTGCAGCGATCGCTAGAGAGAGAGGATTCATGGGATGT
GAGGTTCAACAGGCGTTCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig39118:827..1647+

>mRNA_H-paniculata_contig39118.10186.1 ID=mRNA_H-paniculata_contig39118.10186.1|Name=mRNA_H-paniculata_contig39118.10186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig39118:827..1647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGTGGCACAAGCTCGCAGTAGACGATATCGAGATGGCAACAGTGAC
CACAGCATGGCAGCGCTTCCAAGGAGAAAGTCGCGGAAACATGGAAACGG
TCATCCAGTCAACAGTACAGCAGATCGTAAAGAGGACGTGGCACAAGCTC
GCAGTAGACGATATCGAGATGGCAACAGTGACCACAGCATGGCAGCGCTT
CCAAGGAGAAAGTCGCGGAAACATGGAAACGGTCATCCAGTCAACAGTAC
AGCAGATCGTAAAGGTGCAGCGATCGCTAGAGAGAGAGGATTCATGGGAT
GTGAGGTTCAACAGGCGTTCTGTGCAGCGATCGCTAGAGAGAGAGGATTC
ATGGGATGTGAGGTTCAACAGGCGTTCT
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