mRNA_H-paniculata_contig3902.10171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3902.10171.1
Unique NamemRNA_H-paniculata_contig3902.10171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3902.10171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3902contigH-paniculata_contig3902:3695..10484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930197.132822-CDS-H-paniculata_contig3902:3694..38071622930197.132822-CDS-H-paniculata_contig3902:3694..3807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3902 3695..3807 -
1691481187.1400359-CDS-H-paniculata_contig3902:3694..38071691481187.1400359-CDS-H-paniculata_contig3902:3694..3807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3902 3695..3807 -
1622930197.148405-CDS-H-paniculata_contig3902:10168..104841622930197.148405-CDS-H-paniculata_contig3902:10168..10484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3902 10169..10484 -
1691481187.1505306-CDS-H-paniculata_contig3902:10168..104841691481187.1505306-CDS-H-paniculata_contig3902:10168..10484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3902 10169..10484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3902.10171.1prot_H-paniculata_contig3902.10171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3902 3695..10484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3902.10171.1

>prot_H-paniculata_contig3902.10171.1 ID=prot_H-paniculata_contig3902.10171.1|Name=mRNA_H-paniculata_contig3902.10171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
AGVEATTTTRCASSTPWDAHVSMPSSSDQETTTVHATDIASVLKLDHGAR
SDAAMSTARLDEAATTVGDAGQRGKLKKALVGVLTFESLREGALALSSLF
LKDETGSVRLICVPRPPPTWLGKVVCLSQWTWTVEQKSSKGA*
back to top

mRNA from alignment at H-paniculata_contig3902:3695..10484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3902.10171.1 ID=mRNA_H-paniculata_contig3902.10171.1|Name=mRNA_H-paniculata_contig3902.10171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6790bp|location=Sequence derived from alignment at H-paniculata_contig3902:3695..10484- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGAGTAGAAGCAACAACGACAACGCGGTGCGCCTCGTCGACACCATG
GGATGCCCATGTCTCAATGCCATCGAGTAGTGACCAAGAAACCACCACAG
TGCACGCGACCGACATAGCTAGTGTGCTCAAACTCGACCACGGTGCTCGC
AGTGACGCTGCGATGAGCACTGCCCGACTAGATGAGGCGGCCACGACGGT
TGGAGACGCGGGGCAGCGGGGGAAACTGAAGAAAGCCTTGGTCGGAGTAC
TCACGTTTGAGTCTTTGAGGGAGGGAGCGCTGGCACTTTCGTCGTTGTTC
CTCAAGGATGAAACAGGTGATTGATGAGGTAGAAGGCCACTTTTTATTGT
TACATGTATCTGGCGCGGGCCCCGCTGATCTGGGTAACACTAAGCACATT
GTTCTACATTTTTTTTATGTCAATTAGGCAGTGAGATATTAAAATTGTGT
CAAAATAGTCCCTCAGCTTTCTGGTGAACGTGGGTTGTCTAATCTAATCG
TGGTTGTAGCAAAGTGCGCGGTTTTCTCTGGCTTAGCTTCGGAGCCCGGA
CTAGGATCTAGTTACCTGTTCTACAATTCGGGCCGTTCTAAACGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTTTTTCTCTTCT
TTTGCCCTCCTGTCTAAAAGACACTGAGTTTCTGTGGGAAGAATCAGAAA
AACGTGAAATAGGGTTGAAGAACGCTGCAGGCAGATATATCACGTTTCAT
TTCTGGAATTTCGGAAATTTTGAGCTGAAGAAAAATCAGGGAAAAAGGGA
AGAAAACATCAGCGTTTCGAACGGCCTTTAGTCGCCTAAACACGAGGTTA
AGAGGGTAGGTGGAAGCACCATTTTTTAAGAGACACCATCCCGATGTAGG
GCCCTGTGTCGAGGGACGTGCACCAAACCCTAAGTTTGCTTCAACCATGG
TATAAAGTAGCACACGTTTCGTAAATTATTCCGTGGGTAGGGCAGAATGA
GGGCCCAGATTTGCGAAATACTGATGGCAAGTTTCCTTTCAAATACAATC
CTACTGTGTCCCACTTCATCATTGGTGGCAGAAAATGACGTACTTCGTCA
TGTTCTATGGTGTAATGCGCCCAGATTTGCGTTTTGTATTGTACTGGTGC
TATAAAATATTGCCTTAACCCCTTGACCGCGACATATTTGAATTATATTC
TTTACAGGCAATCGCGCTAGACCAATTTTATCCAAGTAAAAGACAGGGCA
AAAGTAAAAAACTTGTGACCTTTACCTGGTGTTTTTGCTTTCTGCCAAGT
TATCCAAGCAAAATTTTTAACAATTTTTTTCGTTTTACCCGGACCCTCGT
TGGGGCAAGATTGGGCAAAATTTACATGCATTTTTGCCTGATTCAAAAGC
TGCGAAAAAGTGCTGGTCCCCCAATTATTGATTATATAGTTTGCAGTACC
TAACGCTGTACCTAATGCTGTACCGAACGCGGGAGGTCTCACAATGAAGT
CCAGCCGCCAACACTTTGCAGGACGCACCCGCACAGTGCATTGACACACA
CAGGCGTCACACATCAGAAACAGTCGGCATAGCCGAAAGAGATGAACAAT
GCGAAGGTGATAGCTTCGAGGCTAGCAGCCTTGCAGCAGCGCTGACCTTC
GCCATCGCTGTTGCCGCGATTGGCATGGGTAAATATGGTGACGGTGAGCA
CGCCCACCCCTCGAAGCACGCTCGCGAGAGCGGCGATGACAGCATGTTGG
ACATAGAGAACGATGGTGAGCCTAAGTTGAAGCGCACTCGAAACGGCAAA
GATGAGCCGGCGTACTACAGGTGAAGAGTATCTGTGCAACATTACAGAGT
AGTACCTATGCTATTCTCCAAGTGCGTGTACAAATAATGATGTTTCATGC
TCCCATAATCCTCCTGTTTCAGTTTTTCTGGGTCCCGCAGATAAATTGCA
CAAGGAATTTTTTCCAATTTTTTTTGGCCCAAGTTAATGGTACCTGTAAA
AATAACTTTGCTGGAGTTCACTTCTGCTTGGAGAAGAAGCAGTTTTACCA
AAGCGTTTCAAACATAAAAACGTTTCATGATTTATTTGAACCCAAATCGA
CACCTTCGACCAAACAGCTGAGTAACAAGTTAGCTAACACAAGGCACCTT
CCTCGTTTGAACCGTGTACTACCTGGCGTTGCAATGATTTCTTTTTTCAT
GTGTACGTGATTGTTATTCGTGTGTTTTGCTGTCTCTCTGCCACTGCGTG
TATTTTCAGTCCAGCGGCATAGCAGCTGTCCGAACCTCGCTCAAGCACAC
AGCAGTCTGATATTGAACCGGTTCCAGGGATTGTGGTCTGACTTACCGTA
CCTGCTATTGTAACAGGCTTCGGGGTATTTACTCCGTGGGTCTTGTTTTT
CTTCAGGTCTGTTTACCAATTGGTCAAAAATGATGGTTGACAGTTATTGT
GTTTCTTAGTTCATGATTTGTTGTTTCCCGACACGAGCACAACTAACGCT
AACCCTGAACCTAACCCTAGCCCAAACCCCTGTTCTTAGCTTTTAAGAAT
CTAACATTGTGTGCGTTGGAGGAATTCAATTCAGCGCGAACGGCGCTGAT
TTGAGCAAAGACCTTGTTGATGCGCAAGTCCCAGGACTGCTTCAGACGGT
GACGTCGTGGTGACTCTCGCATGTACTAATATGCTGAGTTTGTACAGTCA
ACGATTATCTTCGGCAAATTGATAAACAACACTCCTTCCTTCGCAGACAT
GAATAATCAAACGAAAAACGGGCATTCAGCCACAGCTAGCTGTATTTTGA
CAACAAGAGGACCACCCGGCGTCAATATGTTGCTGCCGCCAACCCCACAA
TGGGAACCTAGCCCATCCTACGGTCAAAGCCCGTGGGTAGCCCAACCTAT
TGACTGTGCAAGCACACACGGTGGATCCAGACTTTTATGCATACAAGCGA
ACGAATACCACCTGTCCTTTACGGATTCGTCAGCTGTGGAATTCGGTGGC
AAGCTCACGGGAGACAAATGAGGGTCCTTTTTAGCAACAAATGTTTTTGA
GGGCACACTTCAAATTTGAGTTCCGTACTGAAATCAGATAACGTACTGCC
ACTTTTAGCAAAAATTAATGAAGTATTCACGTTTGACATGTCATACCTTA
TTTGTCGGGCACGGCGTACCTAAACAGACTTAGCCTACCAGTGTGAGCTG
TAGGTTTCCTAGCGGCTATCATTGGAATGCTGTACTGATAAACTCGCGCT
TCGAAAGCGTTGTCTGCGTGTTTGACGGTGCTTTAATTCCGTCTGTACCA
TTTTCCCAGTGGGCTTAGACCCCGGTTTCTTGAGCGAATTGCCGATTCTG
CTTGCGTACTTTCTTCCTCGTCGACGTCTATTTGGCCGACCAGATACAAG
AATTTCGCGCCCCTCGTGGCACAAAGCCATAAACCCAGTTCCCAAAGTAT
GTTGAAGGCAGAGAGACACAGCGTGCTTGCGGCATGGAACACGTAGTAGC
AGTACACACTCTGCAGGGGAGCCCCCAGCAAACCAACGGTCAATCCAATC
GCTGTTCAGGTTTGAAGAACGAGCGACCTCGGGCCGTCACGTACACCAAC
ATCAGCACTCGGATTAAACTGACACGCGAAGAGTTGTACACTCATTGCGT
ACGTCCCTGCTGCTGTCGGATGTTTTTCGCGTTATGTGTGGGAATACAGA
GACGAGGCGGCATGTCTGACTGACGCATTAACTGAACACAACGAATGAAT
AGCTTTTGCCCAGCGGCAGCGGCAGCGGCAGCCTATGCGCCTGTGCAGCG
GAAAATTGGAAGTGGAATACTCGTTCACATTTGTTTGCGAACCGTCGAAG
TTGTGTCGCCATACTATGTACAGTAATGCGCAAAAGAAAAATGAATTTAC
AACAGCCCCACAGACACCTTAGCAGCAGTACGCTCTTACACAATCTTGTC
GACTAGTACTGGTTTCGCGTCTCTATAGACACACAATGAGTCGTGTAGAG
TAGCAAGTTATGGATTGTTTCCGTCAAATCTACGTTCAACTGACTGCGCA
AGTCCGTTGGCCGCATGGTGCTGTAAAATCCGATTTGGTCCCGTATTGCT
CATCGTGAGCTGCAGGTCCTGGATCGTATATCTCGCGAAACTCCACAGAC
CTACGCCCGAACGGGTAGGGTAGCTCGTGAACTAAGCATGACAGAAAGTC
TAGTCAGAGGTCTTTTAGTGTTCTGTTCAAGGAAATGTAGAACTTCTTAG
GTAGAAATACTTCGGTATGGAAGCATCGGATAAAGGTTTTTGCCTTAGCT
ATATGGGGGTTGAAAAAAAGATGAAAAAAAAAAGATAAAAATATATATAT
ATATATCTCGCGAAACTTCCGAACTTCGGTAATTGAGAATTCGTCTTGTA
TCGCGACGTTGATGAAGGAGGGCTGGGGTACAGGACTCAGAGTTTACTAT
TGGCAATACAGGACCAAATCGAAGTGCGTAGACAGATATTTACTTTCGCA
AACACTCTAATAAAGAAGTGCCGACATTTTATTCTCTTTGCCCGCACTTT
CTGAACGTTCGGGTGAACAATTCAATTTTCTTCGGGAATGCTCGATCTTT
TCGTATTCGCCCGGGGGTGAAATAGTCATGCGCCACAAAACTGACGCAAA
AACTGGTGTTGGTGGCGATACCGTAGATTGGATAGCTGCTTCTACGAGAT
CTACTGCTATGTACAGATTATCGCCGTTGTGCGTGGGCAGGAAAGAAAAG
ACGACGATCCGAACACATACGTGCACGCCGGATTCCTGACCGTATGAAGT
ATTTACCACTCGTCATCATCAGATTATAGATTGCACCTCGCCTTTGAAAC
AGTCTACCATTTTTTGCTCATCAGGTAGCTATCTCAAATTGTTCGATTTT
TGCGGGGTTTAGCTAGTTGTAGGAATGGCCAGCCTGTTACCTCTTTTCGT
AACCGGACCTCGTAACGGCCGAGATGTAGGTTTCCTGACTCACCAGTCGT
GAATAGTGACGTATACGAACAGCTCTAGACAGCTGGTACGTGCTTCTCAG
GTCCAAAATGGGTTCTTTCTATTCCCAAGTGGGATCTTATTTAAAATGCT
GGGTCCATTGTAGAGTGAGAACAGGCGAATGCCCGGGTTTTGTCGTAACG
ACCAAAAAGTGAAAAACCCTTATTAATCTGATTGAGAGATCATGGACTGC
TGGAGAGTTTATGAAACAAGGCCTGCGTTTGACAATACGACGGGCAAAGT
GTAGTGGCTGCTCCAACTATCCTCAGAAGGCGTCAGATCCAGTCTTTTGA
AGTGGCCCCCGCTCTGTAGCGGCCGTGTCTATGGGCCCTATAGGGATCTT
GAATCTTTCAACAAGTCGACTGATGTATAGGAAGGCAAAGCGCTGTGATT
GGCTGTACAGGTCCGCGTAAGGTTGCCCAAACGTGTGTTTCAAGTAATGT
ATAAACCCTGCACAGCTGACGAAGAGATTATGGACTGCTCAAGGGTTTGC
GATTTCGCCCGACGAAAAAACATCTGATTTTAGATTTTAGCGTTGGCGAT
CGACGACCATCTTTTCAAGTTTCAAATGTGGGACATTTGTTTCGCCGCGT
TCGATAGGTCGAGTTTTAGCTCAATAATATATTTGCAACACCTTCTGTGT
AACTTCATCAATAGAGGGTACGCAGGCGGGGGTGGGGGGGGGGGGGGGGG
GGGGTAGACTGGTAGGGGCCTGCGCAGGAATGACATGATCCCGCTTGCGC
ACTCTCTCTGACTAGAACTATTCCACCCGCTTGTCACGGATTCCGTCAGG
ATGTATATATATAACATAAGGTCCAACAAAAACATCAAGGGTTAACGTCT
AACTCGTTTAGCGTTGCAAGCTGAGTAAATTCGCAGTATTGTGTTCAAGC
TGTCATAATCCAAATCTTTGAAACATGGAGCGCGTTTTGCCTGATCTGGT
TTCACCTCTCGTGTTGTAGGGGCGTAGACTTGCGGTTTTCTTGGTGTCTT
ATGGACAGAGTATATGTGTACATGCTGACGGCGTTGGTCGGTTTACAATA
CAACGGTTTTCCATCTGCCAGTTAGTAGCTTGTTGCGTCAGAAGGTACTT
TGCTGGAGTAGACAACACGAGAGAGTAGAGTTATTTTTTTTCGAAGGGAC
TTTATGCCGTTCCGTCCGTTTAATATTTTTGTTTTTTCAAACGTTTTTTT
ATCCTGGTGAGCGCTTGCTTGCATGGGCTTTCCTTGCCAAGAGCCGCGTC
CAAGTACGCACATTATCGGAAGGCAAACATGATAATAATTTTGGGTTTAA
TATATATGTATACTCATGAGCAAAATTATGAAAACGCCGGGACGGGGGTG
AGGTGTACATGTACTCCACGGATGTTTTACATAAATACTTGTCGATCACG
AAGGCAACTTGACGAATGTTTGAACATACACAAATCGAATAGATCAATCA
CTGTCTGTACGAGTCGACTCGTACGGATCAACTGTGGTTACAATCGTGTT
TTTTAACGACCCGTAGGAGACGGATCGGAGTTGCAAACCATGCATGTCCC
GATATGATGATCTAATCTGACCGTACAAGTGAGCGGCAGGAGTTGTGAGC
GATTTGATCGGATCTGATCTAAAACGTGATTTTTTTCTTTCGGTGATGTT
CGCTCCCTCTGCTCGTGTGTTGGATAGGTTCAGTTCGTTTGATCTGTGTC
CCGCGCCCACCGCCCACGTGGCTCGGCAAGGTTGTCTGCCTCTCACAGTG
GACTTGGACTGTGGAGCAGAAGTCGTCCAAAGGTGCGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3902:3695..10484-

>mRNA_H-paniculata_contig3902.10171.1 ID=mRNA_H-paniculata_contig3902.10171.1|Name=mRNA_H-paniculata_contig3902.10171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig3902:3695..10484- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGAGTAGAAGCAACAACGACAACGCGGTGCGCCTCGTCGACACCATG
GGATGCCCATGTCTCAATGCCATCGAGTAGTGACCAAGAAACCACCACAG
TGCACGCGACCGACATAGCTAGTGTGCTCAAACTCGACCACGGTGCTCGC
AGTGACGCTGCGATGAGCACTGCCCGACTAGATGAGGCGGCCACGACGGT
TGGAGACGCGGGGCAGCGGGGGAAACTGAAGAAAGCCTTGGTCGGAGTAC
TCACGTTTGAGTCTTTGAGGGAGGGAGCGCTGGCACTTTCGTCGTTGTTC
CTCAAGGATGAAACAGGCAGGAGTAGAAGCAACAACGACAACGCGGTGCG
CCTCGTCGACACCATGGGATGCCCATGTCTCAATGCCATCGAGTAGTGAC
CAAGAAACCACCACAGTGCACGCGACCGACATAGCTAGTGTGCTCAAACT
CGACCACGGTGCTCGCAGTGACGCTGCGATGAGCACTGCCCGACTAGATG
AGGCGGCCACGACGGTTGGAGACGCGGGGCAGCGGGGGAAACTGAAGAAA
GCCTTGGTCGGAGTACTCACGTTTGAGTCTTTGAGGGAGGGAGCGCTGGC
ACTTTCGTCGTTGTTCCTCAAGGATGAAACAGGTTCAGTTCGTTTGATCT
GTGTCCCGCGCCCACCGCCCACGTGGCTCGGCAAGGTTGTCTGCCTCTCA
CAGTGGACTTGGACTGTGGAGCAGAAGTCGTCCAAAGGTGCGTAAGTTCA
GTTCGTTTGATCTGTGTCCCGCGCCCACCGCCCACGTGGCTCGGCAAGGT
TGTCTGCCTCTCACAGTGGACTTGGACTGTGGAGCAGAAGTCGTCCAAAG
GTGCGTAA
back to top