mRNA_H-paniculata_contig3898.10159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3898.10159.1
Unique NamemRNA_H-paniculata_contig3898.10159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3898.10159.1 vs. uniprot
Match: D7G308_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G308_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.710e-23
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = 1 
Query:   94 KLGRSYSEAGSVALREVWQ-ASGATCATAFKEEARTQYSLQLKSVSLEAAAEQRYFNEWARRERLEQSTARYCRPRQAPRLGEPGWTWAGRSTRLERTAAEEQRKAEASRKVQEAASET-----YRIAIEAALEAGARLGAAQILAAEALDRAMDETLG 552
            +L  + + A    LR  W   +GA CA  +  EA  + SLQ  S S   A +Q+YF+EWARRERLE S  RYCRP + PR GEPGWTWA  S R+ R  AE  RK E ++  ++ A++      Y  A+EAA + G   G A+ILAAEA+++A++ T G
Sbjct:  185 RLPHTMAAAELAPLRAAWDDGAGALCAEKYSSEATRRGSLQAVSTSSTTAQDQKYFDEWARRERLEDSAGRYCRPHRPPRWGEPGWTWADHSERVLRERAEATRKEEENKARRQEAADGHAKMFYEAAVEAAKKNGVSPGTAKILAAEAVEKALEGTNG 343
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BLAST of mRNA_H-paniculata_contig3898.10159.1 vs. uniprot
Match: A0A6H5KD78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD78_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.200e-21
Identity = 78/174 (44.83%), Postives = 100/174 (57.47%), Query Frame = 1 
Query:   79 EVPVPKLGRSYSEAGSVALREVWQ-ASGATCATAFKEEARTQYSLQLKSVSLEAAAEQRYFNEWARRERLEQSTARYCRPRQAPRLGEPGWTWAGRSTRL-----ERTAAEEQRKA---EASR---KVQEAASET----YRIAIEAALEAGARLGAAQILAAEALDRAMDETLG 552
            EV +P    + + A    LR  W   +G  CA  +  EA  + SLQ  S S   A EQ+YF+EWARRERLE S  RYCRP + PR GEPGWTWA  S R+     E T  EE+ KA   EA+    KV  A+S      Y  A+EAA + G  LG A+ILAAEA+++A+++  G
Sbjct:  151 EVRIP---HTMAAAELAPLRAAWDDGAGTLCAEKYSSEATRRGSLQAMSPSSTTAQEQKYFDEWARRERLEDSVGRYCRPHRPPRWGEPGWTWADHSERVLRERAEATRTEEENKARRQEAANGHAKVSSASSVRSVIFYEAAVEAAKKNGVSLGTAKILAAEAVEKALEDANG 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3898.10159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G308_ECTSI8.710e-2344.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD78_9PHAE3.200e-2144.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3898contigH-paniculata_contig3898:10586..12672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1112
Cds size1110
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930194.705099-CDS-H-paniculata_contig3898:10587..114461622930194.705099-CDS-H-paniculata_contig3898:10587..11446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3898 10588..11446 -
1691481186.126675-CDS-H-paniculata_contig3898:10587..114461691481186.126675-CDS-H-paniculata_contig3898:10587..11446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3898 10588..11446 -
1622930194.7205043-CDS-H-paniculata_contig3898:12421..126721622930194.7205043-CDS-H-paniculata_contig3898:12421..12672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3898 12422..12672 -
1691481186.1369164-CDS-H-paniculata_contig3898:12421..126721691481186.1369164-CDS-H-paniculata_contig3898:12421..12672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3898 12422..12672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3898.10159.1prot_H-paniculata_contig3898.10159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3898 10588..12672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3898.10159.1

>prot_H-paniculata_contig3898.10159.1 ID=prot_H-paniculata_contig3898.10159.1|Name=mRNA_H-paniculata_contig3898.10159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=370bp
TSAGGAGDRDALENSQKTGKSSVPLLEVPVPKLGRSYSEAGSVALREVWQ
ASGATCATAFKEEARTQYSLQLKSVSLEAAAEQRYFNEWARRERLEQSTA
RYCRPRQAPRLGEPGWTWAGRSTRLERTAAEEQRKAEASRKVQEAASETY
RIAIEAALEAGARLGAAQILAAEALDRAMDETLGAGVSEEAQLAARERVV
KAVRLMAEGADGEAAAARSRKQVDGVVDPESLHDRSLDSEVIFDKGRRRE
RRNLVATGAAKDEVTIAFYPGGRGPRLIPSPHTNPDAPIADVSVVSVLSP
SGSGQSIPPPMCPLRLVDLMEEALHVAADTPSSEEKMWDPTVAALSDGAA
AAAERARSRTQGSMGRMLTA
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mRNA from alignment at H-paniculata_contig3898:10586..12672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3898.10159.1 ID=mRNA_H-paniculata_contig3898.10159.1|Name=mRNA_H-paniculata_contig3898.10159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2087bp|location=Sequence derived from alignment at H-paniculata_contig3898:10586..12672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCCGCAGGCGGTGCCGGTGATCGTGACGCCCTCGAAAACAGTCAAAA
GACTGGTAAGTCTTCAGTGCCATTGCTGGAAGTGCCGGTACCGAAGCTGG
GGCGCTCTTACAGCGAGGCGGGGTCGGTGGCGCTTCGAGAAGTATGGCAA
GCTTCCGGGGCCACCTGTGCAACGGCATTCAAGGAGGAGGCTCGCACACA
GTATTCTCTACAGCTAAAATCAGTGTCTTTAGAAGCCGCGGCGGAGCAGC
GGTGAGGAATTTTCGATCTTTGGCGTAGTACCTAACATGAGTACCGGCGT
TTGTTCACTGTTTTTTTAAAATTTATTGAGTGATGACTGTAACACTCTTG
TTGATGATAATTCAGCTACGTGATTTGTTTTAAGTAGAACTTCAGTCCTT
GTGCTGCTGCTGGCACAATGTTCAAAGAGCACGAGTATCTAATGGAATAT
GTACGTATCTACAGAGGGATCTCGACATGTTCTTCCTATGGAACAGCTTT
CACCCTTGGTATCACTAGTATATGTGTACATGGACACACTAGCTAAACTT
TCGAAAAAATCAAGTGTGTTCATTTTCTTGTTTCACAATTGCGTCGGGGT
TGGGGATATTCAATTTTCTCTAGCCGATGCTCTTTGCCGCCGTATCGTAG
GTGACAGACAGACGATGGCAACCCCCCCCCTCGTAGTGATAGTTTCAACC
GCACATATCTTGTGGGCCTCGTAGTTTTTTTACGGAAGATAACCTCCATC
TCTATCGTTGGTCTTTTTTTCCTGTTTTTTTGTGCGTGACTCTTTCTCAA
TTTAGACGTTTGAACTAAATACTGTATATATGGTATCGTGTGTAATCGTA
GTAATTGACCTTCCCGGAGAGGAGGATATTCATTTACACCAGCCGCAATC
GAAGAACATGTTTGTGATTTAACTCTGATAAATCAAAGCTAATTTTTGTT
CAGCGTAGCAGCAGCTTGGACCATTTTTTTTTTTTGCGACCTCAGAGCAT
AAAACTTGTAACCGTCGTCCTCTCTCCTTGCAATCATTGTAAAGCTCTCA
CTATGCGTGTAAACTTGACTTTTTCAGGACTCACCTCTCCTCGAGAAGGC
GAACGCCCCTTTCCCCCCCCATCACCCATCATTACATGTATTTACACCTT
ATCCAACCCAACGAGCTTGATCGCATACAAGCCCTAACCCTCAAATAAAT
ATCTTGAATAACAATGCATACCGTAGATACTTCAACGAGTGGGCGAGGAG
GGAACGACTGGAGCAGTCCACCGCTCGCTACTGCCGCCCGCGCCAAGCTC
CGCGTTTAGGCGAGCCGGGCTGGACCTGGGCGGGAAGATCGACTCGCTTG
GAGAGAACGGCGGCTGAAGAACAGCGCAAGGCAGAGGCCTCCAGGAAGGT
GCAGGAGGCAGCGTCGGAGACCTACAGAATAGCTATCGAAGCGGCCCTTG
AGGCCGGAGCCAGACTGGGCGCGGCGCAGATTTTAGCGGCGGAAGCGCTC
GACAGGGCAATGGACGAGACGTTGGGTGCGGGAGTGTCCGAGGAGGCCCA
GCTTGCGGCCCGGGAGAGAGTAGTCAAGGCTGTTCGCTTAATGGCGGAGG
GGGCGGACGGAGAGGCAGCGGCGGCAAGATCCAGGAAACAAGTCGACGGT
GTTGTTGACCCTGAATCACTACACGACAGAAGCCTTGATTCGGAGGTGAT
TTTCGACAAAGGCCGCAGGAGAGAGAGAAGGAACCTAGTCGCCACCGGAG
CGGCGAAGGACGAAGTGACCATAGCTTTCTACCCTGGCGGTCGCGGCCCA
AGACTCATCCCCTCGCCCCATACGAACCCCGACGCGCCGATCGCCGATGT
CTCTGTTGTGTCCGTGTTGTCTCCGTCAGGTTCTGGCCAGTCTATCCCAC
CGCCCATGTGCCCCCTGCGGCTGGTTGATTTGATGGAAGAGGCTCTTCAC
GTCGCGGCTGATACTCCCTCATCGGAGGAGAAAATGTGGGACCCAACCGT
AGCGGCGCTGTCGGATGGCGCCGCGGCTGCGGCAGAGCGAGCGAGGTCGA
GGACGCAAGGGTCGATGGGTCGAATGTTGACAGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3898:10586..12672-

>mRNA_H-paniculata_contig3898.10159.1 ID=mRNA_H-paniculata_contig3898.10159.1|Name=mRNA_H-paniculata_contig3898.10159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at H-paniculata_contig3898:10586..12672- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCCGCAGGCGGTGCCGGTGATCGTGACGCCCTCGAAAACAGTCAAAA
GACTGGTAAGTCTTCAGTGCCATTGCTGGAAGTGCCGGTACCGAAGCTGG
GGCGCTCTTACAGCGAGGCGGGGTCGGTGGCGCTTCGAGAAGTATGGCAA
GCTTCCGGGGCCACCTGTGCAACGGCATTCAAGGAGGAGGCTCGCACACA
GTATTCTCTACAGCTAAAATCAGTGTCTTTAGAAGCCGCGGCGGAGCAGC
GACGTCCGCAGGCGGTGCCGGTGATCGTGACGCCCTCGAAAACAGTCAAA
AGACTGGTAAGTCTTCAGTGCCATTGCTGGAAGTGCCGGTACCGAAGCTG
GGGCGCTCTTACAGCGAGGCGGGGTCGGTGGCGCTTCGAGAAGTATGGCA
AGCTTCCGGGGCCACCTGTGCAACGGCATTCAAGGAGGAGGCTCGCACAC
AGTATTCTCTACAGCTAAAATCAGTGTCTTTAGAAGCCGCGGCGGAGCAG
CGATACTTCAACGAGTGGGCGAGGAGGGAACGACTGGAGCAGTCCACCGC
TCGCTACTGCCGCCCGCGCCAAGCTCCGCGTTTAGGCGAGCCGGGCTGGA
CCTGGGCGGGAAGATCGACTCGCTTGGAGAGAACGGCGGCTGAAGAACAG
CGCAAGGCAGAGGCCTCCAGGAAGGTGCAGGAGGCAGCGTCGGAGACCTA
CAGAATAGCTATCGAAGCGGCCCTTGAGGCCGGAGCCAGACTGGGCGCGG
CGCAGATTTTAGCGGCGGAAGCGCTCGACAGGGCAATGGACGAGACGTTG
GGTGCGGGAGTGTCCGAGGAGGCCCAGCTTGCGGCCCGGGAGAGAGTAGT
CAAGGCTGTTCGCTTAATGGCGGAGGGGGCGGACGGAGAGGCAGCGGCGG
CAAGATCCAGGAAACAAGTCGACGGTGTTGTTGACCCTGAATCACTACAC
GACAGAAGCCTTGATTCGGAGGTGATTTTCGACAAAGGCCGCAGGAGAGA
GAGAAGGAACCTAGTCGCCACCGGAGCGGCGAAGGACGAAGTGACCATAG
CTTTCTACCCTGGCGGTCGCGGCCCAAGACTCATCCCCTCGCCCCATACG
AACCCCGACGCGCCGATCGCCGATGTCTCTGTTGTGTCCGTGTTGTCTCC
GTCAGGTTCTGGCCAGTCTATCCCACCGCCCATGTGCCCCCTGCGGCTGG
TTGATTTGATGGAAGAGGCTCTTCACGTCGCGGCTGATACTCCCTCATCG
GAGGAGAAAATGTGGGACCCAACCGTAGCGGCGCTGTCGGATGGCGCCGC
GGCTGCGGCAGAGCGAGCGAGGTCGAGGACGCAAGGGTCGATGGGTCGAA
TGTTGACAGCGATACTTCAACGAGTGGGCGAGGAGGGAACGACTGGAGCA
GTCCACCGCTCGCTACTGCCGCCCGCGCCAAGCTCCGCGTTTAGGCGAGC
CGGGCTGGACCTGGGCGGGAAGATCGACTCGCTTGGAGAGAACGGCGGCT
GAAGAACAGCGCAAGGCAGAGGCCTCCAGGAAGGTGCAGGAGGCAGCGTC
GGAGACCTACAGAATAGCTATCGAAGCGGCCCTTGAGGCCGGAGCCAGAC
TGGGCGCGGCGCAGATTTTAGCGGCGGAAGCGCTCGACAGGGCAATGGAC
GAGACGTTGGGTGCGGGAGTGTCCGAGGAGGCCCAGCTTGCGGCCCGGGA
GAGAGTAGTCAAGGCTGTTCGCTTAATGGCGGAGGGGGCGGACGGAGAGG
CAGCGGCGGCAAGATCCAGGAAACAAGTCGACGGTGTTGTTGACCCTGAA
TCACTACACGACAGAAGCCTTGATTCGGAGGTGATTTTCGACAAAGGCCG
CAGGAGAGAGAGAAGGAACCTAGTCGCCACCGGAGCGGCGAAGGACGAAG
TGACCATAGCTTTCTACCCTGGCGGTCGCGGCCCAAGACTCATCCCCTCG
CCCCATACGAACCCCGACGCGCCGATCGCCGATGTCTCTGTTGTGTCCGT
GTTGTCTCCGTCAGGTTCTGGCCAGTCTATCCCACCGCCCATGTGCCCCC
TGCGGCTGGTTGATTTGATGGAAGAGGCTCTTCACGTCGCGGCTGATACT
CCCTCATCGGAGGAGAAAATGTGGGACCCAACCGTAGCGGCGCTGTCGGA
TGGCGCCGCGGCTGCGGCAGAGCGAGCGAGGTCGAGGACGCAAGGGTCGA
TGGGTCGAATGTTGACAGCG
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