mRNA_H-paniculata_contig38966.10156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38966.10156.1
Unique NamemRNA_H-paniculata_contig38966.10156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5K8C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-24
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+F PIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:    8 LIWTPPYMPTFHPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPG 58
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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.990e-23
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  IL+VW+QIRLGWYGDP 
Sbjct:  389 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPE 439
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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.370e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  351 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPE 401
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  433 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPE 483
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5JG34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG34_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.440e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  530 LIWTPPYMPTFQPIELFWQHGKHYVSIHFERGRNMLDVWKQIRLGWYGDPE 580
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.870e-22
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMPSFQPIELFW HGKQ+VS+N++   ++ EVW QIR GWYGD  
Sbjct:    8 LIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKE 58
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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.480e-22
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 DLIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
             LIWTPPYMPSFQPIELFW HGKQ+VS N+K+   + EVW Q+R GWYGDP 
Sbjct:  511 QLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPT 562
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KGN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.780e-21
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK ++S++++ G  +L+VW+QIRLG YGDP 
Sbjct:  105 LIWTPPYMPTFQPIELFWQHGKHYLSIHFEKGRNMLDVWKQIRLGCYGDPE 155
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5L7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.650e-21
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW +IRLGWYG+P 
Sbjct:  300 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRTMLDVWRRIRLGWYGNPE 350
[Close]
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.000e-21
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMPSFQPIELFW HGKQ+VSVN++   ++ EVW QIR GWYGD  
Sbjct:  402 LIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKE 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8C1_9PHAE1.060e-2468.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE5.990e-2372.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LE74_9PHAE1.370e-2270.59Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP14_9PHAE1.500e-2270.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG34_9PHAE2.440e-2270.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH53_9PHAE2.870e-2270.59Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D8LQ25_ECTSI8.480e-2271.15Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KGN0_9PHAE1.780e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7T4_9PHAE3.650e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKL0_9PHAE6.000e-2172.55DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38966contigH-paniculata_contig38966:124..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size135
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930194.5617945-UTR-H-paniculata_contig38966:123..1471622930194.5617945-UTR-H-paniculata_contig38966:123..147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38966 124..147 +
1691481186.0608547-UTR-H-paniculata_contig38966:123..1471691481186.0608547-UTR-H-paniculata_contig38966:123..147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38966 124..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930194.577837-CDS-H-paniculata_contig38966:147..2821622930194.577837-CDS-H-paniculata_contig38966:147..282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38966 148..282 +
1691481186.068896-CDS-H-paniculata_contig38966:147..2821691481186.068896-CDS-H-paniculata_contig38966:147..282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38966 148..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38966.10156.1prot_H-paniculata_contig38966.10156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38966 148..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38966.10156.1

>prot_H-paniculata_contig38966.10156.1 ID=prot_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN*
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mRNA from alignment at H-paniculata_contig38966:124..282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38966.10156.1 ID=mRNA_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig38966:124..282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTGATTTGGACGCCCCCGTACATGCCGAGTTTTCAACCTATCGAGTT
GTTCTGGCATCATGGTAAGCAGCATGTCAGCGTCAATTACAAGTCAGGCT
GTAGGATTCTCGAGGTCTGGGAGCAGATCCGGTTGGGTTGGTACGGCGAT
CCAAATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig38966:124..282+

>mRNA_H-paniculata_contig38966.10156.1 ID=mRNA_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig38966:124..282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAGTTTTCAACCTATCGAGTTGTTCTGGCATCATGGTAAGCAGCA
TGTCAGCGTCAATTACAAGTCAGGCTGTAGGATTCTCGAGGTCTGGGAGC
AGATCCGGTTGGGTTGGTACGGCGATCCAAATTAGATGCCGAGTTTTCAA
CCTATCGAGTTGTTCTGGCATCATGGTAAGCAGCATGTCAGCGTCAATTA
CAAGTCAGGCTGTAGGATTCTCGAGGTCTGGGAGCAGATCCGGTTGGGTT
GGTACGGCGATCCAAATTAG
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