mRNA_H-paniculata_contig3893.10153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3893.10153.1 vs. uniprot
Match: D8LC53_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC53_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.040e-30 Identity = 118/298 (39.60%), Postives = 160/298 (53.69%), Query Frame = 1
Query: 139 RHQYEGIVIYLMRLVNKPTTSQGLELWEGMDPGWEKVLRSKAQARMENAEEGGEDPAAAQTSARSPSGVGAV----STPSTAHNSIQSVGSARGLG-----PARTPSALQFGNR------MSISVQSSQTESMSPPRVAISTTHQVFFVGGCCTARAKPQVDLPLHELKPKKRRKRRRPSAICMTIFFAGIAETSSQMHQQPLAYIRAGAVSRVRANRRIRAERRGSGDGRRREYSTDPAEVLAWQASKAKNAQQERLIAKAREALLEEQREAAM--EASTTTLGDDDTSVDTLNTAE 981
RHQYEGIV+YLM LVN P TSQGL+LWEG+DP WEK+LRS+AQAR+E+ E ++A + +G+ +V +TPST NS++S SA GLG PAR G+R + + + M PPR ++T +A + QV +H + R + +A AG A +SS + + S R RR R G+ R +S A+VLAWQA+K K+A+Q RLI KAREAL E + EA M S T+LGDD+ S+DT NTA+
Sbjct: 118 RHQYEGIVVYLMGLVNNPETSQGLKLWEGLDPSWEKMLRSRAQARVEDGTEEDVGKPQEMSTAAAAAGLSSVRLGVTTPSTTRNSLRSSESAMGLGVSNRTPARRDVFSTSGSRDRGGXXXXXXXXTRERKMMMPPRGETASTKGSTKERKIMSAPSAAQVQPGVHHQRTTARNRGSDSAAPA-----AGTAMSSSDGARVDGTRSGSRPSSATRRRRRSREGDAPPGETSPRVFSNGAADVLAWQATKVKSAKQGRLIEKAREALRETEHEAEMARSRSMTSLGDDEGSIDTCNTAD 410
BLAST of mRNA_H-paniculata_contig3893.10153.1 vs. uniprot
Match: A0A6H5J6H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H7_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.040e-27 Identity = 114/299 (38.13%), Postives = 152/299 (50.84%), Query Frame = 1
Query: 139 RHQYEGIVIYLMRLVNKPTTSQGLELWEGMDPGWEKVLRSKAQARMENAEEGGEDPAAAQTSARSPSGVGAV----STPSTAHNSIQSVGSARGLG-----PARTPSALQFGNR------MSISVQSSQTESMSPPRVAISTTHQVFFVGGCCTARAKPQVDLPLHELKPKKRRKRRRPSAICMTIFFAGIAETSSQMHQQPLAYIRAGAVSRVRANRRIRAER-RGSGDGRRREYSTDPAEVLAWQASKAKNAQQERLIAKAREALLEEQREA--AMEASTTTLGDDDTSVDTLNTAE 981
RHQY+GI IYLM LVN P TSQ L+LWEG+DP WEK+LRS+AQAR+E+ E ++A + +G+ +V +TPST HNS+ S SA G+G PAR GNR PPR ++T +A++ QV +H + R R S AG++ + GA R+ ER G+ R +S A+VLAWQA+K K+A+Q RLI KAREAL E + EA A S T+LGDD+ S+DT NTA+
Sbjct: 200 RHQYKGIAIYLMGLVNNPETSQELKLWEGLDPSWEKMLRSRAQARVEDGTEEDVGRPRDMSTAAAAAGLSSVRLGVTTPSTTHNSLMSSESAMGIGVSNRTPARRDVFSTSGNRDRGXXXXXXXXXXXXXXXXXPPRGQAASTKGXXXXXXXMSAQSAAQVQPGVHHQRTTTRN---RGSGSASPAAGAGMSSSD-------------GA--------RVDGERDEPPGETSPRVFSNGAADVLAWQATKVKSAKQGRLIEKAREALRETEYEAELARSRSMTSLGDDEASIDTCNTAD 474
BLAST of mRNA_H-paniculata_contig3893.10153.1 vs. uniprot
Match: A0A8B6GL30_MYTGA (NF-kappa-B inhibitor-like protein 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GL30_MYTGA) HSP 1 Score: 58.2 bits (139), Expect = 3.090e-6 Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 RNEFAQTPLHAACVSGNIDVVQRLVQGGADISAQDAAEDTPFHEACRHQYEGIVIYLM 174
RNE +TPLH AC+ GN+ VQ+L++ G ++ +D P HEA H IV+YL+
Sbjct: 15 RNEKGETPLHRACIEGNLKKVQKLIEQGHPVNPRDHCGWIPLHEAANHDVYEIVLYLL 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3893.10153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3893.10153.1 >prot_H-paniculata_contig3893.10153.1 ID=prot_H-paniculata_contig3893.10153.1|Name=mRNA_H-paniculata_contig3893.10153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1640bp RNEFAQTPLHAACVSGNIDVVQRLVQGGADISAQDAAEDTPFHEACRHQYback to top mRNA from alignment at H-paniculata_contig3893:689..13147+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3893.10153.1 ID=mRNA_H-paniculata_contig3893.10153.1|Name=mRNA_H-paniculata_contig3893.10153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12459bp|location=Sequence derived from alignment at H-paniculata_contig3893:689..13147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3893:689..13147+ >mRNA_H-paniculata_contig3893.10153.1 ID=mRNA_H-paniculata_contig3893.10153.1|Name=mRNA_H-paniculata_contig3893.10153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9840bp|location=Sequence derived from alignment at H-paniculata_contig3893:689..13147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |