mRNA_H-paniculata_contig3881.10132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3881.10132.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI) HSP 1 Score: 383 bits (984), Expect = 3.170e-106 Identity = 302/656 (46.04%), Postives = 362/656 (55.18%), Query Frame = 3
Query: 561 SGSKEASAVAGMGN-DGLAGGI---WSIVNEEKVELADSDDEVPLPDGMPAFRDLEDAMLVRDLKKDRLPGRIIRGRDGSGKTAGGLFVAQPISELRLASSSALVLCLRPRLPQAPLDPASEQEARXXXXXXXXXXEMLENGQARPEGGEQVDKARGIAAEGGATKEGWEKLDMARRTLEALEANLADLVMKREHREDVLESAFKNCEKVARNAKNLEHENSVRAWEKQIKAEREAIHETRQREENPLEAEVKAMRRSMEREKQRLTKLELEKDSVQQQXXXQLAKQNDKSAVPA-ETDTLFTRVRGVMFSAAKATLEFVRGTDTEASKDEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEWGT---LSSAPKSGKGSKGGSKKFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI--------------------TAANAARASNDEIESRRTDPTTDLHLWTFLRRNPLGDRGQLPSDEPTWPGPLKEVIVENTSQPTLENLNDALGKAYGLPASRVWAIKNNWLKHEWVRLTPEMGLKKVKKKSNKKKGVGGDGRRQVTNIRDAPYSLKDGDVVAVVDKEEDPEGQADLTRAEDEAYREQGTALPQTSGGPKRRRKKKTLANRAATEIGLTLGGAD 2444
S S SA AG G D LA I W V E K E ADSDDE+PLP+GMP F+ LE+AMLVR+L+KDRLPG+IIR D G TAGGLFV Q ISEL L SS ALVLCLRPRLPQ PL + R E+LENGQA D NL D+ KR+ LE + K ++N ++ E + S++AW+K++ A +E I T +EE PL+ EVK+M+ ++E K E E+D +K+A E+ ++FTRV+GV+FS AKAT F R DT +WG +A SGK KGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T A+ R DE+E RRTDP TDLHLWTF R+NPLGD G LP DEP WPGPLKEVIVE+ SQPTL+NL++ALGKAYG+PA+RV AIK+NW KH+WVRLT EMG+KK+KK G G+R VTN+R+APYS KDGDVVAVVDK ED G+ADL RA+DEAYRE G +T + RA E+GLTLGG D
Sbjct: 1860 SSSANCSAAAGEGGGDKLAASIDREW--VKEVKEERADSDDEIPLPEGMPGFQTLEEAMLVRELRKDRLPGKIIRSSDVGGNTAGGLFVGQTISELNLCSSVALVLCLRPRLPQTPLVQEASMSRREKLAE-----ELLENGQANG------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEDMQKKRDVDIRALELGWTTYNKASKNNRSPEQDRSMKAWKKELNARKERIDNTHLKEERPLDKEVKSMKTAVEXXXXXXXKTEKEED-------------REKAAAQGLESASIFTRVKGVLFSGAKATFGFGRTDDTPDDN---------------AGIAIAAAQLKSNREQESIAMEKETDKELEASDWGVPKARGNANSSGK--KGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAMASPETTLADLLRKREDEVERRRTDPVTDLHLWTFWRKNPLGDGGTLPIDEPEWPGPLKEVIVEDVSQPTLDNLHEALGKAYGIPATRVRAIKHNWGKHQWVRLTREMGIKKMKK--------GKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEAYREHGKGQAKTKKXXXXXXXXXPASKRAVPEVGLTLGGGD 2464
BLAST of mRNA_H-paniculata_contig3881.10132.1 vs. uniprot
Match: A0A6H5JDC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC1_9PHAE) HSP 1 Score: 360 bits (925), Expect = 5.060e-101 Identity = 299/647 (46.21%), Postives = 364/647 (56.26%), Query Frame = 3
Query: 561 SGSKEASAVAGMGN-DGLAGGI-WSIVNEEKVELADSDDEVPLPDGMPAFRDLEDAMLVRDLKKDRLPGRIIRGRDGSGKTAGGLFVAQPISELRLASSSALVLCLRPRLPQAPLDPASEQEARXXXXXXXXXXEMLENGQARPEGGEQVDKARGIAAEGGATKEGWEKLDMARRTLEALEANLADLVMKREHREDVLESAFKNCEKVARNAKNLEHENSVRAWEKQIKAEREAIHETRQREENPLEAEVKAMRRSMEREKQRLTKLELEKDSVQQQXXXQLAKQNDKSAVPA-ETDTLFTRVRGVMFSAAKATLEFVRGTDT--------------EASKDEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEWGTLSSAPKSGKGSKGGSKKFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITAANAARASNDEIESRRTDPTTDLHLWTFLRRNPLGDRGQLPSDEPTWPGPLKEVIVENTSQPTLENLNDALGKAYGLPASRVWAIKNNWLKHEWVRLTPEMGLKKVKKKSNKKKGVGGDGRRQVTNIRDAPYSLKDGDVVAVVDKEEDPEGQADLTRAEDEA----YREQGTALPQTSGGPKRRRKKKTLANRAATEIGLTLGG 2438
S S SA AG G D A I V E K E ADSDDE+PLP+GMP F+ LE+AMLVR+L+KDRLPG+IIR D G TAGGLFV Q ISEL L SS ALVLCLRPRLPQ PL + R E+LENGQA + G NL D+ KR+ L+ + K +N ++ E + ++ W+K++ A +E I +EE PL+ EVK+M+ ++E+ K+ + K E E+D +K+A E+ ++FTRV+GV+FS AKAT F R D ++++++E XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX T A+ R DE+E RRTDP TDLHLWTF R+NPLGD G LP DEP WPGPLKEVIVEN SQPTL+NL++ALGKAYG+PASRV AIK+NW KH+WVRLT EMG+KK+KK G G+R VTN+R+APYS KDGDVVAVVDK ED G+ADL RA+DEA YRE G + RA E+GLTLGG
Sbjct: 608 SSSANCSAAAGQGEGDKSAASIDRQGVEEVKEEHADSDDEIPLPEGMPGFQTLEEAMLVRELRKDRLPGKIIRSSDVGGNTAGGLFVGQTISELNLCSSVALVLCLRPRLPQTPLVQEASMSRREKLAE-----ELLENGQANGDHGTXXXXXXXXXXXX------XXXXXXXXXXXXXXXXNLEDMQKKRDVDIRALDLGWTTYSKALKNTRSPEQDRLMKTWKKELNARKERIDNAHLKEERPLDKEVKSMKTAVEKMKRSIKKTEKEED-------------REKAAAQGLESASIFTRVKGVLFSGAKATFGFGRTDDAPDDNASIAIAAAQLKSNREQESIAMEKEMDKELEASDWGVPKARGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXMASPETTLADLLRKREDEVERRRTDPVTDLHLWTFCRKNPLGDGGTLPIDEPEWPGPLKEVIVENVSQPTLDNLHEALGKAYGIPASRVRAIKHNWGKHQWVRLTREMGIKKMKK--------GKKGKRLVTNLREAPYSFKDGDVVAVVDKMEDESGEADLARADDEASASAYREHGKXXXXXXXXXXXXXXX-PASKRAMPEVGLTLGG 1213
BLAST of mRNA_H-paniculata_contig3881.10132.1 vs. uniprot
Match: A0A7S3UXB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXB8_HETAK) HSP 1 Score: 62.4 bits (150), Expect = 5.550e-7 Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 3
Query: 1851 ARASNDEIESRRTDPTTDLHLWTFLRRNPLG----DRGQLPSDEPTWPGPLKEVIVENTSQPTLENLNDALGKAYGLPASRVWAIKNNWLKHEWVRLTPEMGL--KKVKKKSNKKKGVGGDGRRQVTNIRDAPYSLKDGDVVAVVDKEEDPEGQADLTRAE 2315
A+ + RRT P + LW R PLG D+ Q +P WP KEVI+ +QP L +LN L ++G+ V ++ EW+ LT + L KK Q NI+DAP+S+K G+ + VVDK E P+ + + E
Sbjct: 45 AQIDEPVVAERRTAPGA-ISLWV-QRARPLGADAEDQAQKLDLQPEWPP--KEVILIAGTQPNLGHLNRFLASSFGIENDNVLVSRHCLESFEWINLTSALTLTTKKGXXXXXXXXXXXKSKSPQPRNIKDAPFSVKSGEHLLVVDKSEFPDSKTIVLETE 201
BLAST of mRNA_H-paniculata_contig3881.10132.1 vs. uniprot
Match: A0A2G8KR90_STIJA (Putative ubiquitin carboxyl-terminal hydrolase 40-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KR90_STIJA) HSP 1 Score: 63.9 bits (154), Expect = 2.490e-6 Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 3
Query: 1986 PLKEVIVENTSQPTLENLNDALGKAYGLPASRVWAIKNNWLKHEWVRLTPEMGLKKVKKKSNKKKGVGGDGRRQVTNIRDAPYSLKDGDVVAVVDKEEDPEGQADLTRAEDE 2321
P+++ + + T P+ E+L AL +P R+ K K++W+ + + + KK KK G+ +V N++ PYSL+DGDV+AV D E DP Q D T ED+
Sbjct: 1112 PVEDFVWDTTGGPSPEDLKQALSIGTSIPVDRLLLAKKLPDKYDWLIILSSAVMGERGKKGKKK------GKPKVFNLKQGPYSLRDGDVIAVKDLEFDPLNQDDFTTEEDD 1217 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3881.10132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3881.10132.1 >prot_H-paniculata_contig3881.10132.1 ID=prot_H-paniculata_contig3881.10132.1|Name=mRNA_H-paniculata_contig3881.10132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=837bp MCLRNLGRIYLDERKSLTELRATLKNHLEKALSKAAKQVAQEAAARAAEQback to top mRNA from alignment at H-paniculata_contig3881:3331..15086- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3881.10132.1 ID=mRNA_H-paniculata_contig3881.10132.1|Name=mRNA_H-paniculata_contig3881.10132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11756bp|location=Sequence derived from alignment at H-paniculata_contig3881:3331..15086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3881:3331..15086- >mRNA_H-paniculata_contig3881.10132.1 ID=mRNA_H-paniculata_contig3881.10132.1|Name=mRNA_H-paniculata_contig3881.10132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5022bp|location=Sequence derived from alignment at H-paniculata_contig3881:3331..15086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |