mRNA_H-paniculata_contig38760.10123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38760.10123.1
Unique NamemRNA_H-paniculata_contig38760.10123.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: A0A6H5KWE3_9PHAE (GCFC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.830e-20
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEV 150
            QDMA F+MLM W+D++PPLY TSILD EFFPKWLTVLH WLS+TADYAEV
Sbjct:  427 QDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEV 476
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-20
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEV 150
            QDMA F+MLM W+D++PPLY TSILD EFFPKWLTVLH WLS+TADYAEV
Sbjct:  857 QDMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEV 906
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: A0A7S3QTZ3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTZ3_DUNTE)

HSP 1 Score: 62.4 bits (150), Expect = 4.990e-10
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEV 150
            QDMA F  +M W++V+P  +  ++LD  FFPKW  VLH+WLS T +Y EV
Sbjct:  654 QDMAPFQWVMGWNEVLPHHHMAALLDVGFFPKWHQVLHYWLSHTPNYDEV 703
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: D0N2T4_PHYIT (STIP-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2T4_PHYIT)

HSP 1 Score: 59.3 bits (142), Expect = 6.090e-9
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR 156
            Q + A   ++ W D +P   F ++L+GEFFPKWL VLH W+S + D AE+++
Sbjct:  591 QSLEALTWVLAWKDHLPHRQFIALLEGEFFPKWLKVLHKWVSGSPDLAELEK 642
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: A0A6A6VXZ7_9PEZI (G-patch domain-containing protein (Fragment) n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VXZ7_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-8
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR 156
            QDMA    ++ W+ V  PL    +L  EFFPKWL +LH WL+   +YAE+ +
Sbjct:  502 QDMAPLEHVLAWTPVFKPLVIAQLLLAEFFPKWLNILHLWLTAEPNYAEISQ 553
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: A0A7R9V8C2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V8C2_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 1.820e-8
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR 156
            QDMA F  +  W+DV+ P    S+L+  FFPKW  VL +WLS + +Y EV R
Sbjct:  168 QDMAPFEWVTAWADVLAPAAMVSLLEVGFFPKWHAVLAYWLSASPNYDEVTR 219
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: A0A0K2VA08_LEPSM (Tuftelininteracting protein 11like [Bombus terrestris] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VA08_LEPSM)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR 156
            QD+A +N +M W D++PP     +L+  FFPKWL VL  WL+   +Y EV +
Sbjct:  628 QDLAPWNAVMEWVDMLPPNVIVGLLEKHFFPKWLQVLATWLNHRPNYNEVTK 679
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: C4JS68_UNCRE (G-patch domain-containing protein n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JS68_UNCRE)

HSP 1 Score: 56.2 bits (134), Expect = 7.440e-8
Identity = 23/50 (46.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEV 150
            QD+AAF  +M+W     P     +L  EFFPKWL++LH WL+    Y EV
Sbjct:  558 QDLAAFEDVMKWRPYFKPNVLALLLCAEFFPKWLSILHLWLTSDPSYEEV 607
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BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: H3DEQ6_TETNG (Tuftelin-interacting protein 11 n=3 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3DEQ6_TETNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR 156
            Q M  FN +M W  ++ P    S+LD  FFPKWL VL  WLS++ +Y E+ +
Sbjct:  630 QQMEPFNWVMDWEGMLSPSSLVSLLDKNFFPKWLQVLCSWLSNSPNYEEITK 681
[Close]
BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Match: S7RTV1_GLOTA (TFP11-domain-containing protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RTV1_GLOTA)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 QDMAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWL-SDTADYAEV 150
            Q+M   N ++ W+D+I    F+ IL+ EFFPKWL +LH+WL   +A + EV
Sbjct:  784 QNMEPINQVLAWADIIRSSVFSQILETEFFPKWLEILHFWLIQPSASFEEV 834
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38760.10123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE3_9PHAE1.830e-2080.00GCFC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LQD4_ECTSI1.840e-2080.00G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3QTZ3_DUNTE4.990e-1052.00Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
D0N2T4_PHYIT6.090e-944.23STIP-like protein n=2 Tax=Phytophthora infestans T... [more]
A0A6A6VXZ7_9PEZI1.560e-844.23G-patch domain-containing protein (Fragment) n=1 T... [more]
A0A7R9V8C2_9CHLO1.820e-848.08Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A0K2VA08_LEPSM2.910e-844.23Tuftelininteracting protein 11like [Bombus terrest... [more]
C4JS68_UNCRE7.440e-846.00G-patch domain-containing protein n=1 Tax=Uncinoca... [more]
H3DEQ6_TETNG1.390e-744.23Tuftelin-interacting protein 11 n=3 Tax=Tetraodon ... [more]
S7RTV1_GLOTA1.390e-745.10TFP11-domain-containing protein n=1 Tax=Gloeophyll... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38760contigH-paniculata_contig38760:1492..1647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.6e-15
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
KEGG koko:K13103
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size156
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.2937653-UTR-H-paniculata_contig38760:1491..14971622930189.2937653-UTR-H-paniculata_contig38760:1491..1497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38760 1492..1497 +
1691481184.2315514-UTR-H-paniculata_contig38760:1491..14971691481184.2315514-UTR-H-paniculata_contig38760:1491..1497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38760 1492..1497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.3096776-CDS-H-paniculata_contig38760:1497..16471622930189.3096776-CDS-H-paniculata_contig38760:1497..1647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38760 1498..1647 +
1691481184.242434-CDS-H-paniculata_contig38760:1497..16471691481184.242434-CDS-H-paniculata_contig38760:1497..1647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38760 1498..1647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38760.10123.1prot_H-paniculata_contig38760.10123.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38760 1498..1647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38760.10123.1

>prot_H-paniculata_contig38760.10123.1 ID=prot_H-paniculata_contig38760.10123.1|Name=mRNA_H-paniculata_contig38760.10123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MAAFNMLMRWSDVIPPLYFTSILDGEFFPKWLTVLHWWLSDTADYAEVKR
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mRNA from alignment at H-paniculata_contig38760:1492..1647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38760.10123.1 ID=mRNA_H-paniculata_contig38760.10123.1|Name=mRNA_H-paniculata_contig38760.10123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig38760:1492..1647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATGGCGGCCTTCAATATGCTCATGCGGTGGTCTGATGTCATCCC
ACCGTTGTACTTCACGAGCATCCTGGACGGAGAGTTCTTCCCCAAGTGGC
TGACTGTGCTGCATTGGTGGCTCAGCGACACGGCAGACTACGCGGAGGTA
AAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig38760:1492..1647+

>mRNA_H-paniculata_contig38760.10123.1 ID=mRNA_H-paniculata_contig38760.10123.1|Name=mRNA_H-paniculata_contig38760.10123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig38760:1492..1647+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCCTTCAATATGCTCATGCGGTGGTCTGATGTCATCCCACCGTT
GTACTTCACGAGCATCCTGGACGGAGAGTTCTTCCCCAAGTGGCTGACTG
TGCTGCATTGGTGGCTCAGCGACACGGCAGACTACGCGGAGGTAAAAAGG
ATGGCGGCCTTCAATATGCTCATGCGGTGGTCTGATGTCATCCCACCGTT
GTACTTCACGAGCATCCTGGACGGAGAGTTCTTCCCCAAGTGGCTGACTG
TGCTGCATTGGTGGCTCAGCGACACGGCAGACTACGCGGAGGTAAAAAGG
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