mRNA_H-paniculata_contig38712.10113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38712.10113.1
Unique NamemRNA_H-paniculata_contig38712.10113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.810e-27
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +DVRELSRIHWKVLVVDEAHRLKNC SKLFQELGSLPRDHSLLLTGTPLQNRTEE+
Sbjct:  808 KDVRELSRIHWKVLVVDEAHRLKNCGSKLFQELGSLPRDHSLLLTGTPLQNRTEEL 863
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.810e-27
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +DVRELSRIHWKVLVVDEAHRLKNC SKLFQELGSLPRDHSLLLTGTPLQNRTEE+
Sbjct:  763 KDVRELSRIHWKVLVVDEAHRLKNCGSKLFQELGSLPRDHSLLLTGTPLQNRTEEL 818
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A835Z670_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z670_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.980e-22
Identity = 44/56 (78.57%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            ++VR+LSR+ W+VLVVDEAHRLKNC+SKLFQEL SLPR+H LLLTGTPLQN+TEE+
Sbjct:  161 REVRDLSRVAWQVLVVDEAHRLKNCESKLFQELSSLPREHCLLLTGTPLQNKTEEL 216
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A4D9D793_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D793_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.350e-18
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +D++ LSRI WKVLVVDEAHRLKN  S+LF EL +LPRDH +LLTGTPLQN+TEE+
Sbjct: 1008 KDIKILSRIMWKVLVVDEAHRLKNPASRLFMELRTLPRDHCVLLTGTPLQNKTEEL 1063
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: W7U0D9_9STRA (Myb domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0D9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.530e-17
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +D++ LSRI WKVLVVDEAHRLKN  S+LF EL +LPR+H +LLTGTPLQN+TEE+
Sbjct:   97 KDIKILSRIMWKVLVVDEAHRLKNPASRLFVELRTLPREHCVLLTGTPLQNKTEEL 152
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A7S4ENJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENJ2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.640e-17
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +DV   ++I WK L+VDEAHRLKN  SKLF+EL S+PRD+ LLLTGTPL N TEE+
Sbjct:   60 KDVDVFTKIKWKALIVDEAHRLKNSSSKLFEELTSVPRDYCLLLTGTPLANATEEL 115
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A7S2K2V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2V5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.010e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +D+  LSRI W+ LVVDEAHRLKN  S+LF +LG++PRD  LLLTGTPLQN TEE+
Sbjct:   65 KDINVLSRIRWRALVVDEAHRLKNKKSRLFADLGTVPRDFCLLLTGTPLQNSTEEL 120
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A7S1B9C3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9C3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.920e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +D+  LS+I WK L+VDEAHRLKN  S+LF+EL S+PRD  LLLTGTPLQN TEE+
Sbjct:  222 KDIHVLSKITWKALIVDEAHRLKNTQSRLFRELNSVPRDWCLLLTGTPLQNSTEEL 277
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BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: B8CAT3_THAPS (Chromodomain-helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAT3_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 2.520e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +DV  LS+I WK L+VDEAHRLKN  ++LF++L S+PRD  LLLTGTPLQN TEE+
Sbjct:  395 KDVNVLSKIKWKALIVDEAHRLKNIKARLFEDLASVPRDFCLLLTGTPLQNSTEEL 450
[Close]
BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Match: A0A2P4YLW4_9STRA (Chromodomain-helicase-DNA-binding protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.690e-16
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQNRTEEV 168
            +D+  LS+IHW+ LVVDEAHRLKN  S+L +++ SL RDH +LLTGTPLQN+TEE+
Sbjct:  548 KDIAVLSKIHWRCLVVDEAHRLKNQSSRLVEQMRSLRRDHCVLLTGTPLQNKTEEL 603
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38712.10113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU9_ECTSI3.810e-2794.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVU7_9PHAE3.810e-2794.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z670_9STRA2.980e-2278.57SNF2 family N-terminal domain-containing protein n... [more]
A0A4D9D793_9STRA2.350e-1873.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U0D9_9STRA1.530e-1771.43Myb domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S4ENJ2_9STRA3.640e-1766.07Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2K2V5_9STRA9.010e-1767.86Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1B9C3_9STRA9.920e-1767.86Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
B8CAT3_THAPS2.520e-1666.07Chromodomain-helicase (Fragment) n=1 Tax=Thalassio... [more]
A0A2P4YLW4_9STRA4.690e-1664.29Chromodomain-helicase-DNA-binding protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38712contigH-paniculata_contig38712:349..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue8.6e-23
Seed eggNOG ortholog2880.D8LDU9
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0384@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930188.2584033-CDS-H-paniculata_contig38712:348..5161622930188.2584033-CDS-H-paniculata_contig38712:348..516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38712 349..516 +
1691481183.830166-CDS-H-paniculata_contig38712:348..5161691481183.830166-CDS-H-paniculata_contig38712:348..516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38712 349..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38712.10113.1prot_H-paniculata_contig38712.10113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38712 349..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38712.10113.1

>prot_H-paniculata_contig38712.10113.1 ID=prot_H-paniculata_contig38712.10113.1|Name=mRNA_H-paniculata_contig38712.10113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
QDVRELSRIHWKVLVVDEAHRLKNCDSKLFQELGSLPRDHSLLLTGTPLQ
NRTEEV
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mRNA from alignment at H-paniculata_contig38712:349..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38712.10113.1 ID=mRNA_H-paniculata_contig38712.10113.1|Name=mRNA_H-paniculata_contig38712.10113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig38712:349..516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGTTCGAGAGCTCTCGCGCATCCACTGGAAAGTGCTGGTCGTGGA
CGAAGCGCATCGACTGAAGAATTGCGACTCGAAATTGTTTCAAGAGCTAG
GCTCGCTCCCTCGCGACCACAGCCTCCTCCTCACAGGAACTCCCCTGCAG
AACAGGACCGAGGAGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig38712:349..516+

>mRNA_H-paniculata_contig38712.10113.1 ID=mRNA_H-paniculata_contig38712.10113.1|Name=mRNA_H-paniculata_contig38712.10113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig38712:349..516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGTTCGAGAGCTCTCGCGCATCCACTGGAAAGTGCTGGTCGTGGA
CGAAGCGCATCGACTGAAGAATTGCGACTCGAAATTGTTTCAAGAGCTAG
GCTCGCTCCCTCGCGACCACAGCCTCCTCCTCACAGGAACTCCCCTGCAG
AACAGGACCGAGGAGGTTCAGGACGTTCGAGAGCTCTCGCGCATCCACTG
GAAAGTGCTGGTCGTGGACGAAGCGCATCGACTGAAGAATTGCGACTCGA
AATTGTTTCAAGAGCTAGGCTCGCTCCCTCGCGACCACAGCCTCCTCCTC
ACAGGAACTCCCCTGCAGAACAGGACCGAGGAGGTT
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