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Homology
BLAST of mRNA_H-paniculata_contig3871.10111.1 vs. uniprot
Match: D7G1P7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI) HSP 1 Score: 309 bits (792), Expect = 7.260e-90 Identity = 259/655 (39.54%), Postives = 328/655 (50.08%), Query Frame = 1
Query: 166 SPEDKARATRAAVERQQKHMMKSRGIDLDDATLEGAELAKLKAISRAQAEAQSG-YVPSSSAADDYLDELKKDSKKRNKLFRSSMEDDSVP--QEPDYPNIPEVE---QQQPQSQRAPDAS--------PRRRTKATTSIQNESDAYIAALSGIKVEITK-NPYLDDQSTTNFIDTAEDEPAAVKSKVLQPPLRVPRPT-GPNMSYAERLRKAREEKGKQESGGAVAGTQPPSTPVQTLPPQSPPAPTVVP-----ALSYMEKLKQARESKAAAGGGVPTQIHPPPPPADVETSRGSVEAAPERAGAAVPVPSRVVQQQQSADPFLGVEEDGPETKIMRVMDLLTEHKTASLVGEARVAELRDTLVDAREALRTETYGGSPPPVTATPQTIPTATPPLAIREQPSPVAEVTPNRAAALAAVVSTAARSG------DKETLRRCSALVQAHAHSSLLGNDLMALREKLIATLTIVENQIDNG------------GLFEDAWSVGDDSGVLPPPLPPAGISDQLPGESAPPSVDDVPPVPASIGGIQSVGGVLSDMGVGHRPTSFEEETAPTAPPPAAPARMSAAPVDMQTKGR-GWTDGSLGEYEKSVATRGLGYLLKHRGGTGYGRGRVKDMEAENMIVTLAELTEILHDEMVEN 2010
S E+K RA +AAVERQQK M K+RGIDLDD TLEGAELA+ KA+SRAQAEAQ+G YVPSSSAADDYL+ LK DS+K+ K ++ + + +P + P P E P AP +S P++RT A+ SIQN++D Y+A+L GIKVE+ NPYL + +EP + V +PP +P GP MSYAE+++ A+ K + A + + PV TLPP + P ALSY EKLKQA+ KAAAG GV + P A P R+++Q + V+E + K++++MDLLTEHKTA L GE RV+ELR +LVDAREALR ETYG S D LRRCSAL+QAH HS L G DL AL E L ++LTIV Q+ G DD+GV PA GGIQSVGG LSDMGV +P SF P + + G GWT GSLGE EK+ A++ LGYLLKHRGG GYGRG++ +AE M+ LAE+TEI+ +EMVE
Sbjct: 187 SKEEKERAIKAAVERQQKMMAKARGIDLDDPTLEGAELARKKALSRAQAEAQAGGYVPSSSAADDYLNSLKADSQKKQKETQAKLRGEPLPPREGPLLSASPPTETATSDVPDKSAAPLSSGEDYERVKPQKRTAASWSIQNKADQYMASLKGIKVELADDNPYLKESLV--------EEP---RQPVRRPPXXXXKPPLGPQMSYAEKMKLAKGAKAAGTATAAAPSSNVVAAPVATLPPATEAXXXXXPSSGSPALSYAEKLKQAQAQKAAAGNGVFPKSVPXXXXXXXXXXXXXXXA---------PASRRLLEQDMPSGGL--VDEGDSQAKMVKLMDLLTEHKTAGLEGEDRVSELRHSLVDAREALRAETYGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAILRRCSALLQAHVHSGLAGQDLQALVEGLASSLTIVTAQVVTGTAXXXXXXXXXXXXXXXXXXXXDDTGV-----------------------------PAYAGGIQSVGGALSDMGVAKKPASF-------------------LPEEGEGDGSAGWTGGSLGEEEKAAASKALGYLLKHRGGKGYGRGKMTGAQAEAMVAALAEVTEIMEEEMVEE 771
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2424 |
| Cds size | 1977 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3871.10111.1 >prot_H-paniculata_contig3871.10111.1 ID=prot_H-paniculata_contig3871.10111.1|Name=mRNA_H-paniculata_contig3871.10111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=659bp
MGGNRFRNMMNQARANDQRRQMEGPAGSRRDAENTPRPQFQHFSPEDKAR
ATRAAVERQQKHMMKSRGIDLDDATLEGAELAKLKAISRAQAEAQSGYVP
SSSAADDYLDELKKDSKKRNKLFRSSMEDDSVPQEPDYPNIPEVEQQQPQ
SQRAPDASPRRRTKATTSIQNESDAYIAALSGIKVEITKNPYLDDQSTTN
FIDTAEDEPAAVKSKVLQPPLRVPRPTGPNMSYAERLRKAREEKGKQESG
GAVAGTQPPSTPVQTLPPQSPPAPTVVPALSYMEKLKQARESKAAAGGGV
PTQIHPPPPPADVETSRGSVEAAPERAGAAVPVPSRVVQQQQSADPFLGV
EEDGPETKIMRVMDLLTEHKTASLVGEARVAELRDTLVDAREALRTETYG
GSPPPVTATPQTIPTATPPLAIREQPSPVAEVTPNRAAALAAVVSTAARS
GDKETLRRCSALVQAHAHSSLLGNDLMALREKLIATLTIVENQIDNGGLF
EDAWSVGDDSGVLPPPLPPAGISDQLPGESAPPSVDDVPPVPASIGGIQS
VGGVLSDMGVGHRPTSFEEETAPTAPPPAAPARMSAAPVDMQTKGRGWTD
GSLGEYEKSVATRGLGYLLKHRGGTGYGRGRVKDMEAENMIVTLAELTEI
LHDEMVEN* back to topmRNA from alignment at H-paniculata_contig3871:782..4528+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3871.10111.1 ID=mRNA_H-paniculata_contig3871.10111.1|Name=mRNA_H-paniculata_contig3871.10111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3747bp|location=Sequence derived from alignment at H-paniculata_contig3871:782..4528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCTGGCGGCGTAGCTGGAGACGAAGGCAATCCCATGGGAGGGAACCG
GTTCCGCAACATGATGAACCAGGCCCGTGCCAACGATCAACGGCGGCAAA
TGGAAGGACCTGCGGGATCTAGACGTGATGCTGAGAACACGCCGAGGCCT
CAGTTCCAGCATTTCTCGCCAGAGGACAAGGCGAGGGCAACGCGGGCGGC
GGTGGAGCGACAACAGAAGCATATGATGAAGTCTAGGGGGATTGACCTTG
ATGATGCAACCCTTGAAGGCGCCGAGTTGGCAAAACTAAAAGCTATCAGC
CGCGCGCAAGCGGAGGCACAGTGAGTTGTTGATGTTCCTTTTATTGTGAT
GATTATTTTGCCACTAGTTAAAACCCATATATAGCGGGTATCCTTGTTTA
ATCCTTTCAGCACGACTTGAGGGGATCTTGTGGCCTGTATCCATGGCTAA
GAGCTTCATGTACTTTGCGTCATGATTCATGTACACGACAGCTCCTGCAG
TGAAGACCCCAAATATCTTGCGCTGAAAGGTTTACACCGTTGTACCAGTA
TTTGTATCGTTGCGTGCACTTCACGGTGATGACCGCGGGATACATGAACC
TGAAATCAACGCCAGCGCTGCCACGCACCCACCCATTATCTTCTTGGAAA
TAATCCATGCAAGCATCGAACAGGGGTGCCAATATGCTGGGGCCCAAAGT
GTGGCACCACCTCAAAACACAAGTACTAGGGTGTTACAGCTGCTTTGGCA
CGGCTCTTGCACAAGATGTCCCAACTTCTTCTCAGAAGTAGTGTGCGATC
GACGTGTGCGAGGGGCAAATTTTTATATTGTCGAAAACAAAAGCGCCACA
TGCTTGAACAATGCCATGGCTTGCGCTGCGTCTCCGCGATACCTCCCATG
CCACAGGAGTGGCTACGTCCCCAGTTCTAGTGCGGCTGATGACTATCTCG
ATGAGCTCAAAAAAGATTCCAAGAAGAGGAATAAGTTATTCCGAAGCTCG
ATGGAAGATGATTCCGTTCCCCAAGAACCCGACTACCCCAACATACCGGA
AGTGGAGCAGCAGCAGCCGCAGTCTCAGGTAAGATAGTCGACGTTGCGTT
GCCCAGATTAACATGCAACGAGGGCATTGCCTATCAGTTTGATAGTGTTT
GACTACAATATGAGTTGGTTTGCGGTTGTTCGTGTTCAAAAAGTACATTT
AGGGGATCTTAGATGACAACGACACTTGCAATTTTGGTGCAAGACAATGA
CTTTCGATTTTTGACGCACCTCCACGAACGTTCATTTGACCCCTGAGTCG
AGAACCCCCACCGCATGTATCGAAAAACATGATACAACTACACTTTGTTT
TTGCCACGCACCCCCCCGTCCAATCAGCGTGCACCCGATGCCTCTCCCCG
GCGTCGCACCAAAGCCACCACCAGCATCCAGAATGAGTCGGACGCTTATA
TTGCCGCTCTTAGCGGAATAAAGGTAGAGATCACCAAGAACCCCTACCTG
GACGACCAGAGCACGACTAATTTTATCGATACTGCAGAAGACGAGCCTGC
GGCTGTCAAGAGCAAGGTATTGCAACCGCCGTTGCGAGTTCCCCGCCCTA
CCGGACCGAACATGAGCTACGCGGAGAGGCTAAGAAAGGCTCGCGAGGAA
AAAGGGAAGCAAGAGAGTGGTGGCGCAGTCGCCGGTACCCAGCCGCCTTC
CACACCGGTCCAAACGCTGCCTCCTCAGTCTCCGCCGGCGCCGACAGTCG
TTCCTGCTCTGAGCTACATGGAGAAACTCAAGCAAGCACGGGAATCCAAG
GCAGCTGCCGGCGGGGGAGTGCCGACGCAAATTCACCCGCCGCCCCCTCC
CGCAGATGTGGAGACCAGTCGGGGGTCTGTCGAGGCTGCACCTGAGCGCG
CTGGAGCTGCCGTTCCAGTACCGAGCCGAGTTGTGCAACAGCAGCAGTCC
GCTGACCCGTTCTTGGGGGTAGAAGAGGATGGGCCGGAGACCAAGGTAAT
CTGGCCGGTGTTGGTAGTTTATTTGGTTTTAGCGAAGGATAGTGCAAAAT
TTTTAAGTGGGTGAATGAGGTTTAGGGAGGAATCGTGAACTCCACTAATT
CGAAGTGCAGTGTAAGGAGAAGCATTAGAAAGTCCTCGGAAAGCACCCGG
GAAGCAGGGCTGGCAATGCTTCAAGCGTGTGTGAGCTGGGCGGGAGTTTA
AACATGCTGTGATGTGACTTCAAAGATAATATTTCGCACTTTATGTCTCG
TCTTCTTGCGTCGCCTATAGTTGCGTTCGGTTACTCAAGTTACGGTTTAT
GTTCACGGGTGCGGGTATGACCTTGCACAAGGTCGTCGAAAGGGTCGAGC
TTCGGCTACGGCCACTTATTTCCTCTCTCTTTTAGCTTATCCACCTCCAC
TCGTTCTTTACGAAACATACACCAACACCGCAGATAATGCGTGTTATGGA
CCTTTTAACGGAACACAAGACGGCGAGCTTAGTCGGCGAGGCACGAGTCG
CAGAACTGCGCGATACGCTCGTCGATGCCAGGGAAGCCCTGCGGACCGAG
ACCTATGGAGGATCTCCGCCGCCCGTCACCGCCACCCCACAGACCATCCC
GACCGCAACCCCGCCTCTGGCAATACGAGAACAGCCATCCCCAGTAGCGG
AGGTGACCCCCAACAGAGCAGCCGCTTTGGCGGCAGTTGTTTCGACCGCA
GCACGCAGCGGCGACAAGGAAACTCTCCGCCGTTGCAGCGCTCTGGTACA
GGCACACGCACACTCGAGTCTGTTGGGGAACGACCTTATGGCCTTGCGAG
AGAAGCTTATAGCGACTCTCACGATTGTTGAGAATCAAATCGATAATGGT
GGGTTGTTCGAGGATGCGTGGTCGGTTGGTGACGATTCAGGGGTGCTGCC
GCCGCCGCTGCCCCCCGCTGGTATTAGCGACCAGCTCCCAGGAGAATCGG
CGCCGCCCAGTGTTGATGATGTCCCTCCCGTGCCGGCATCTATTGGTGGC
ATTCAATCCGTAGGAGGTGTGCTTTCGGACATGGGAGTGGGACATAGGCC
GACGAGTTTCGAGGAGGAGACGGCGCCAACAGCGCCCCCGCCTGCTGCCC
CAGCTCGCATGAGTGCAGCACCAGTTGACATGCAAACTAAGGGGAGGGGA
TGGACAGATGGAAGCCTTGGAGAGTACGAGAAGAGCGTTGCAACTAGAGG
ATTGGGCTATCTGCTTAAGCACCGGGGTGGGACAGGATACGGTCGAGGAC
GTGTGAAGGATATGGAGGCGGAAAACATGATCGTGACGCTGGCTGAGCTA
ACTGAGATTTTGCATGATGAAATGGTTGAAAATTGATTTGCCGCAGTAAG
TGTTTACTTCGATTTTTTTTTGCTTTTCTGTCAAATGTGAATACGTATTG
TGACGCGTGCTTTCGTTCTGTTTCAGGTATAATGTAGAACAGTCGCCAGG
GGGAATGGCGGTGGCTATAATGGAAAATCCAGTGTCAAGCATTGGTATTT
ATCCTCACATCACTAGGCAGGGATGCGGTACAATTAATGCTGCTTTATTT
TCTCTTTTTCTTCCTCTTCTCATTGTGATTGTACACGCCAATGGTGACAA
CTGTTCGCAACCATTATTAACTCTGTTCGCGGTTTTACGTTATGATACCG
TTTCTGCCCATAGATGATGGCAAAACAACGTAATCGTGGCAAGTAAAGCG
TTTTATTTGTTTCATGTGCGCGTATAATCTACAACTTGACGGTTTAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3871:782..4528+ >mRNA_H-paniculata_contig3871.10111.1 ID=mRNA_H-paniculata_contig3871.10111.1|Name=mRNA_H-paniculata_contig3871.10111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3954bp|location=Sequence derived from alignment at H-paniculata_contig3871:782..4528+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGGAACCGGTTCCGCAACATGATGAACCAGGCCCGTGCCAACGA
TCAACGGCGGCAAATGGAAGGACCTGCGGGATCTAGACGTGATGCTGAGA
ACACGCCGAGGCCTCAGTTCCAGCATTTCTCGCCAGAGGACAAGGCGAGG
GCAACGCGGGCGGCGGTGGAGCGACAACAGAAGCATATGATGAAGTCTAG
GGGGATTGACCTTGATGATGCAACCCTTGAAGGCGCCGAGTTGGCAAAAC
TAAAAGCTATCAGCCGCGCGCAAGCGGAGGCACAATGGGAGGGAACCGGT
TCCGCAACATGATGAACCAGGCCCGTGCCAACGATCAACGGCGGCAAATG
GAAGGACCTGCGGGATCTAGACGTGATGCTGAGAACACGCCGAGGCCTCA
GTTCCAGCATTTCTCGCCAGAGGACAAGGCGAGGGCAACGCGGGCGGCGG
TGGAGCGACAACAGAAGCATATGATGAAGTCTAGGGGGATTGACCTTGAT
GATGCAACCCTTGAAGGCGCCGAGTTGGCAAAACTAAAAGCTATCAGCCG
CGCGCAAGCGGAGGCACAGAGTGGCTACGTCCCCAGTTCTAGTGCGGCTG
ATGACTATCTCGATGAGCTCAAAAAAGATTCCAAGAAGAGGAATAAGTTA
TTCCGAAGCTCGATGGAAGATGATTCCGTTCCCCAAGAACCCGACTACCC
CAACATACCGGAAGTGGAGCAGCAGCAGCCGCAGTCTCAGGAGTGGCTAC
GTCCCCAGTTCTAGTGCGGCTGATGACTATCTCGATGAGCTCAAAAAAGA
TTCCAAGAAGAGGAATAAGTTATTCCGAAGCTCGATGGAAGATGATTCCG
TTCCCCAAGAACCCGACTACCCCAACATACCGGAAGTGGAGCAGCAGCAG
CCGCAGTCTCAGCGTGCACCCGATGCCTCTCCCCGGCGTCGCACCAAAGC
CACCACCAGCATCCAGAATGAGTCGGACGCTTATATTGCCGCTCTTAGCG
GAATAAAGGTAGAGATCACCAAGAACCCCTACCTGGACGACCAGAGCACG
ACTAATTTTATCGATACTGCAGAAGACGAGCCTGCGGCTGTCAAGAGCAA
GGTATTGCAACCGCCGTTGCGAGTTCCCCGCCCTACCGGACCGAACATGA
GCTACGCGGAGAGGCTAAGAAAGGCTCGCGAGGAAAAAGGGAAGCAAGAG
AGTGGTGGCGCAGTCGCCGGTACCCAGCCGCCTTCCACACCGGTCCAAAC
GCTGCCTCCTCAGTCTCCGCCGGCGCCGACAGTCGTTCCTGCTCTGAGCT
ACATGGAGAAACTCAAGCAAGCACGGGAATCCAAGGCAGCTGCCGGCGGG
GGAGTGCCGACGCAAATTCACCCGCCGCCCCCTCCCGCAGATGTGGAGAC
CAGTCGGGGGTCTGTCGAGGCTGCACCTGAGCGCGCTGGAGCTGCCGTTC
CAGTACCGAGCCGAGTTGTGCAACAGCAGCAGTCCGCTGACCCGTTCTTG
GGGGTAGAAGAGGATGGGCCGGAGACCAAGCGTGCACCCGATGCCTCTCC
CCGGCGTCGCACCAAAGCCACCACCAGCATCCAGAATGAGTCGGACGCTT
ATATTGCCGCTCTTAGCGGAATAAAGGTAGAGATCACCAAGAACCCCTAC
CTGGACGACCAGAGCACGACTAATTTTATCGATACTGCAGAAGACGAGCC
TGCGGCTGTCAAGAGCAAGGTATTGCAACCGCCGTTGCGAGTTCCCCGCC
CTACCGGACCGAACATGAGCTACGCGGAGAGGCTAAGAAAGGCTCGCGAG
GAAAAAGGGAAGCAAGAGAGTGGTGGCGCAGTCGCCGGTACCCAGCCGCC
TTCCACACCGGTCCAAACGCTGCCTCCTCAGTCTCCGCCGGCGCCGACAG
TCGTTCCTGCTCTGAGCTACATGGAGAAACTCAAGCAAGCACGGGAATCC
AAGGCAGCTGCCGGCGGGGGAGTGCCGACGCAAATTCACCCGCCGCCCCC
TCCCGCAGATGTGGAGACCAGTCGGGGGTCTGTCGAGGCTGCACCTGAGC
GCGCTGGAGCTGCCGTTCCAGTACCGAGCCGAGTTGTGCAACAGCAGCAG
TCCGCTGACCCGTTCTTGGGGGTAGAAGAGGATGGGCCGGAGACCAAGAT
AATGCGTGTTATGGACCTTTTAACGGAACACAAGACGGCGAGCTTAGTCG
GCGAGGCACGAGTCGCAGAACTGCGCGATACGCTCGTCGATGCCAGGGAA
GCCCTGCGGACCGAGACCTATGGAGGATCTCCGCCGCCCGTCACCGCCAC
CCCACAGACCATCCCGACCGCAACCCCGCCTCTGGCAATACGAGAACAGC
CATCCCCAGTAGCGGAGGTGACCCCCAACAGAGCAGCCGCTTTGGCGGCA
GTTGTTTCGACCGCAGCACGCAGCGGCGACAAGGAAACTCTCCGCCGTTG
CAGCGCTCTGGTACAGGCACACGCACACTCGAGTCTGTTGGGGAACGACC
TTATGGCCTTGCGAGAGAAGCTTATAGCGACTCTCACGATTGTTGAGAAT
CAAATCGATAATGGTGGGTTGTTCGAGGATGCGTGGTCGGTTGGTGACGA
TTCAGGGGTGCTGCCGCCGCCGCTGCCCCCCGCTGGTATTAGCGACCAGC
TCCCAGGAGAATCGGCGCCGCCCAGTGTTGATGATGTCCCTCCCGTGCCG
GCATCTATTGGTGGCATTCAATCCGTAGGAGGTGTGCTTTCGGACATGGG
AGTGGGACATAGGCCGACGAGTTTCGAGGAGGAGACGGCGCCAACAGCGC
CCCCGCCTGCTGCCCCAGCTCGCATGAGTGCAGCACCAGTTGACATGCAA
ACTAAGGGGAGGGGATGGACAGATGGAAGCCTTGGAGAGTACGAGAAGAG
CGTTGCAACTAGAGGATTGGGCTATCTGCTTAAGCACCGGGGTGGGACAG
GATACGGTCGAGGACGTGTGAAGGATATGGAGGCGGAAAACATGATCGTG
ACGCTGGCTGAGCTAACTGAGATTTTGCATGATGAAATGGTTGAAAATTG
AATAATGCGTGTTATGGACCTTTTAACGGAACACAAGACGGCGAGCTTAG
TCGGCGAGGCACGAGTCGCAGAACTGCGCGATACGCTCGTCGATGCCAGG
GAAGCCCTGCGGACCGAGACCTATGGAGGATCTCCGCCGCCCGTCACCGC
CACCCCACAGACCATCCCGACCGCAACCCCGCCTCTGGCAATACGAGAAC
AGCCATCCCCAGTAGCGGAGGTGACCCCCAACAGAGCAGCCGCTTTGGCG
GCAGTTGTTTCGACCGCAGCACGCAGCGGCGACAAGGAAACTCTCCGCCG
TTGCAGCGCTCTGGTACAGGCACACGCACACTCGAGTCTGTTGGGGAACG
ACCTTATGGCCTTGCGAGAGAAGCTTATAGCGACTCTCACGATTGTTGAG
AATCAAATCGATAATGGTGGGTTGTTCGAGGATGCGTGGTCGGTTGGTGA
CGATTCAGGGGTGCTGCCGCCGCCGCTGCCCCCCGCTGGTATTAGCGACC
AGCTCCCAGGAGAATCGGCGCCGCCCAGTGTTGATGATGTCCCTCCCGTG
CCGGCATCTATTGGTGGCATTCAATCCGTAGGAGGTGTGCTTTCGGACAT
GGGAGTGGGACATAGGCCGACGAGTTTCGAGGAGGAGACGGCGCCAACAG
CGCCCCCGCCTGCTGCCCCAGCTCGCATGAGTGCAGCACCAGTTGACATG
CAAACTAAGGGGAGGGGATGGACAGATGGAAGCCTTGGAGAGTACGAGAA
GAGCGTTGCAACTAGAGGATTGGGCTATCTGCTTAAGCACCGGGGTGGGA
CAGGATACGGTCGAGGACGTGTGAAGGATATGGAGGCGGAAAACATGATC
GTGACGCTGGCTGAGCTAACTGAGATTTTGCATGATGAAATGGTTGAAAA
TTGA back to top
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