mRNA_H-paniculata_contig3866.10101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3866.10101.1
Unique NamemRNA_H-paniculata_contig3866.10101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3866.10101.1 vs. uniprot
Match: D7G5I5_ECTSI (Regulator of G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I5_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.740e-38
Identity = 87/178 (48.88%), Postives = 115/178 (64.61%), Query Frame = 3 
Query: 2040 LLYSEFFCRSNGTEAIGLILRNEDMRLAFKEFLTVRWCVENLDFVEVVMNYQTMI----NEVGSRDPGALALGKHIEDMFIARGSPREVNIGQDMRERCLKSRSRDVEMGQASMATFDAVAFELILLMNHTTMRDFKESAAYSAIEACLQEGPRDTRFSGATSSLTYDEDELVEADND 2561
            LL   FFC+ NGTE +  +L N D+R  FK+FL  R C ENL FVE VM YQ M+     E  S    AL LG  IE+ +++  S  EVNIG DMR+ C+  R+RDVE+ +AS+ TF  V  EL+ LM H+++ +F+ SA Y+ I+ACL  GPR TR SGATSSLT++++   E D D
Sbjct:  287 LLELPFFCKENGTEEMRAVLENADLRAGFKQFLAKRLCAENLVFVEDVMRYQEMVVGVDAESASAPVAALQLGGEIEEKYLSESSRLEVNIGDDMRKDCVARRARDVELARASLDTFTPVVLELLSLMVHSSLPEFRGSAHYATIKACLYMGPRGTRNSGATSSLTHEDEWGTEDDED 464
[Close]
BLAST of mRNA_H-paniculata_contig3866.10101.1 vs. uniprot
Match: A0A6H5KTY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY4_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.760e-19
Identity = 70/225 (31.11%), Postives = 104/225 (46.22%), Query Frame = 3 
Query: 2040 LLYSEFFCRSNGTEAIGLILRNEDMRLAFKEFLTVRWCVENLDFVEVVMNYQTMINEVGSRDPGALALGKHIEDMFIARGSPREVNIGQDMRERCLKSRSRDVEMGQASMATFDAVAFELI---------------------------------------------------LLMNHTTMRDFKESAAYSAIEACLQEGPRDTRFSGATSSLTYDEDELVEADND 2561
            LL   FFC+ NGTE +  +L N D+R  ++E +      E+ + V              S    AL LG  IE+ +++  SP EVNIG DMR+ C+  R+RDVE+ +AS+ TF  V  EL+                                                    +M H+++ +F+ SA Y+ I+ACL  GPR+ R SGATSSLT++++   + D D
Sbjct:  477 LLKLPFFCKENGTEEMRAVLENADLRAGYQEMVVA----EDAEGV--------------SGPAAALQLGGEIEEKYLSESSPLEVNIGDDMRKNCVAKRARDVELARASLDTFTPVVLELLSRLFVEHMDLLCFCKEQRKHARKVTNVKQHRRVLKSKYPIQINRSFFLLVPTVMVHSSLPEFRGSAHYATIKACLYMGPREIRNSGATSSLTHEDEWGTDEDED 683
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3866.10101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I5_ECTSI1.740e-3848.88Regulator of G protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTY4_9PHAE8.760e-1931.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3866contigH-paniculata_contig3866:10957..17003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons5
Model size3629
Cds size2664
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.64028-UTR-H-paniculata_contig3866:10956..109731622930186.64028-UTR-H-paniculata_contig3866:10956..10973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3866 10957..10973 +
1691481182.989964-UTR-H-paniculata_contig3866:10956..109731691481182.989964-UTR-H-paniculata_contig3866:10956..10973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3866 10957..10973 +
1622930186.725168-UTR-H-paniculata_contig3866:16055..170031622930186.725168-UTR-H-paniculata_contig3866:16055..17003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3866 16056..17003 +
1691481183.0476036-UTR-H-paniculata_contig3866:16055..170031691481183.0476036-UTR-H-paniculata_contig3866:16055..17003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3866 16056..17003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.652361-CDS-H-paniculata_contig3866:10973..130881622930186.652361-CDS-H-paniculata_contig3866:10973..13088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 10974..13088 +
1691481182.9994538-CDS-H-paniculata_contig3866:10973..130881691481182.9994538-CDS-H-paniculata_contig3866:10973..13088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 10974..13088 +
1622930186.6653945-CDS-H-paniculata_contig3866:13947..140031622930186.6653945-CDS-H-paniculata_contig3866:13947..14003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 13948..14003 +
1691481183.0088897-CDS-H-paniculata_contig3866:13947..140031691481183.0088897-CDS-H-paniculata_contig3866:13947..14003Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 13948..14003 +
1622930186.6812904-CDS-H-paniculata_contig3866:14504..146071622930186.6812904-CDS-H-paniculata_contig3866:14504..14607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 14505..14607 +
1691481183.0182583-CDS-H-paniculata_contig3866:14504..146071691481183.0182583-CDS-H-paniculata_contig3866:14504..14607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 14505..14607 +
1622930186.6966236-CDS-H-paniculata_contig3866:15198..153131622930186.6966236-CDS-H-paniculata_contig3866:15198..15313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 15199..15313 +
1691481183.0282972-CDS-H-paniculata_contig3866:15198..153131691481183.0282972-CDS-H-paniculata_contig3866:15198..15313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 15199..15313 +
1622930186.7123635-CDS-H-paniculata_contig3866:15780..160551622930186.7123635-CDS-H-paniculata_contig3866:15780..16055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 15781..16055 +
1691481183.0376496-CDS-H-paniculata_contig3866:15780..160551691481183.0376496-CDS-H-paniculata_contig3866:15780..16055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3866 15781..16055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3866.10101.1prot_H-paniculata_contig3866.10101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3866 10974..16055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3866.10101.1

>prot_H-paniculata_contig3866.10101.1 ID=prot_H-paniculata_contig3866.10101.1|Name=mRNA_H-paniculata_contig3866.10101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=888bp
MRIRRSFFSKPATPPRFRQSNHKTKVLDHHALAAAAAAAAVAVAPPPGSS
NTAPKVALAEDPKKKLGQSTRSLEDGKGGGRSGDATGDPALSQFAEFPRR
APIVNAHEECEERRRRCSTSDNCCNAPVPTPRPPAAPGVKPISGRPLLSR
TAGMGGSSGFWPWTRGGPTAPETATGKSRDDFNGRSEPRIGMGMGLDTRT
ARAASAVAKSSRTIQAGLSSESEISFSEGGSDSGFPAAESSSPLTTMESA
CELAESLNLAGVARGADLAAGSVLLRSRLEGPPPWGHGLHRSNSVEGPLN
TESDGGSHEDDVEDDEEEFMCERTRREGYNVTDQFFLESARRQRATGGNR
EELQLKRYFATPDRKMEEATAEASEQEQNESISRHSRQQLHSVAEEDSGQ
CVDGEEEGGVFDSNRSEERNHRRLWSNPWEAVASAIRGNPARSSASSTGE
GREGGESGGSVSGGEDRGRSESVPVATVVTPRLERARSGGSLSGSIMTRM
RFGALRERNGSGAGRNVGTRDDSPAGARDAPDRKPLAPSSVTDVHRVERS
SVSKIVSGGARILGGRVTDRHRKGEAQLNRRCVVGMVESVGQRVEENMTT
VESKPPHRVVGAAERARVEHGWMEADGGLGERETITGDDDGSGQGSGGGG
GGGDASRRAPAGTEKKQSDGACCTLLYSEFFCRSNGTEAIGLILRNEDMR
LAFKEFLTVRWCVENLDFVEVVMNYQTMINEVGSRDPGALALGKHIEDMF
IARGSPREVNIGQDMRERCLKSRSRDVEMGQASMATFDAVAFELILLMNH
TTMRDFKESAAYSAIEACLQEGPRDTRFSGATSSLTYDEDELVEADNDYQ
GMSARSRERGLLSEAQHHVADWYGLDVETVARPNTWS*
back to top

mRNA from alignment at H-paniculata_contig3866:10957..17003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3866.10101.1 ID=mRNA_H-paniculata_contig3866.10101.1|Name=mRNA_H-paniculata_contig3866.10101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6047bp|location=Sequence derived from alignment at H-paniculata_contig3866:10957..17003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACGCACGCGGCGTCAATGCGAATTCGAAGATCCTTCTTCTCCAAGCCC
GCAACCCCGCCCCGATTCCGCCAAAGCAATCACAAGACGAAAGTCCTGGA
TCACCATGCGCTCGCGGCAGCAGCAGCTGCCGCCGCTGTCGCCGTCGCGC
CGCCACCTGGAAGCAGCAACACCGCACCGAAAGTAGCCCTTGCCGAGGAC
CCAAAGAAGAAACTTGGACAGTCCACGCGCAGCCTCGAGGATGGCAAGGG
TGGGGGCAGGAGCGGCGATGCAACCGGCGACCCCGCCTTGTCTCAGTTCG
CCGAATTCCCGCGGCGCGCCCCCATCGTTAACGCGCACGAAGAATGTGAA
GAGCGCCGGCGTCGGTGTTCGACTTCGGACAATTGTTGTAACGCTCCGGT
CCCAACGCCCCGCCCGCCGGCGGCACCCGGTGTCAAGCCCATTTCGGGAC
GGCCACTGTTATCGCGGACGGCGGGCATGGGTGGATCGTCTGGATTTTGG
CCGTGGACCCGAGGAGGACCCACAGCTCCTGAAACCGCAACCGGCAAGAG
TAGAGATGATTTCAACGGACGGTCAGAACCGAGGATTGGGATGGGCATGG
GGCTTGATACTAGGACTGCGAGAGCAGCATCGGCGGTGGCGAAATCGTCG
CGGACCATACAGGCGGGGTTGTCGTCGGAATCGGAAATTTCTTTTAGTGA
AGGAGGATCGGACTCGGGGTTCCCCGCGGCAGAATCATCGTCGCCGTTAA
CAACGATGGAAAGCGCGTGTGAACTGGCCGAATCATTGAACTTGGCTGGA
GTTGCTCGGGGAGCGGATCTTGCGGCGGGATCGGTGTTATTACGTTCTCG
GCTGGAGGGACCGCCGCCGTGGGGGCATGGACTGCACAGATCTAATAGTG
TGGAGGGTCCACTAAACACTGAGAGTGATGGTGGTAGTCATGAAGATGAC
GTTGAGGATGATGAGGAGGAATTCATGTGCGAGCGGACAAGACGAGAGGG
CTATAACGTTACGGACCAGTTTTTCCTGGAGAGCGCCCGCCGCCAGAGGG
CGACGGGGGGGAACAGAGAAGAGTTGCAGTTGAAACGCTACTTCGCGACG
CCCGATCGCAAGATGGAGGAAGCCACAGCAGAGGCCTCAGAACAAGAACA
AAATGAAAGCATCAGCAGGCACTCGAGGCAACAGCTACATTCTGTGGCGG
AGGAAGATTCAGGGCAGTGTGTAGACGGGGAGGAGGAAGGAGGCGTGTTT
GATTCCAACCGCTCGGAGGAGAGGAATCACCGACGGTTGTGGAGCAACCC
TTGGGAAGCGGTTGCTTCCGCGATCCGGGGGAATCCCGCGCGGTCATCGG
CTTCTTCTACGGGAGAAGGCCGAGAAGGAGGGGAAAGCGGCGGCAGCGTT
AGCGGTGGCGAGGATCGAGGGAGATCGGAATCGGTGCCAGTAGCCACAGT
CGTGACGCCTAGGTTGGAACGCGCCCGCAGCGGCGGTAGCTTGTCAGGTA
GTATCATGACCCGGATGAGGTTTGGGGCCCTTCGCGAGCGTAATGGCAGC
GGCGCCGGCCGCAACGTGGGTACTAGAGATGACTCCCCAGCTGGCGCTAG
AGATGCGCCGGATCGTAAACCTTTGGCGCCTTCATCTGTCACCGACGTGC
ACCGGGTCGAGCGGAGCTCCGTGTCCAAGATTGTCTCTGGTGGCGCTCGC
ATTTTGGGGGGAAGGGTTACCGATCGTCACCGGAAAGGAGAAGCGCAATT
GAACCGCAGGTGTGTAGTGGGAATGGTGGAGTCGGTTGGGCAGAGGGTAG
AGGAGAATATGACGACAGTGGAATCAAAGCCCCCGCACAGGGTTGTCGGT
GCTGCGGAGCGGGCGCGAGTAGAACATGGTTGGATGGAAGCGGACGGCGG
CTTGGGAGAGCGGGAGACGATCACGGGCGATGATGACGGCAGCGGCCAAG
GCAGCGGCGGCGGCGGTGGCGGCGGCGATGCCAGTAGAAGAGCCCCGGCG
GGCACCGAGAAAAAACAGAGCGACGGCGCGTGCTGCACGCTGCTGTACTC
TGAGTTTTTTTGCAGGTCGAATGGAACGGAAGCGATCGGGTTGATTTTGA
GGAACGAGGACATGAGATTGGCGTTTAAGGAGGTGTGTCATGTTTTTGCC
CCATTTGTGCAAATTATACTGTGTACTGTACTGTACTGTACTGTACTGTA
CTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTA
CTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTA
TTAATTTCCCCCTGTTCTACAAATGAGTTTTTTTTTTGCAAACGACATGA
ATGATCTCTAAGTCGGGGGAAAAAAAGAGATTATTTTGCTCAATCGCGAG
TTGTTTTTTTTTAACTTGAATGCGACTCGTCGGTCTTGTGTGCTGACAGT
GCAATGAAAAGCAGATAAATGACCCAGCATGTCCTTCTTTATCGTTTTTT
TTTTTTTTTTTTAACAAAAAAAGAAAGTTCAAAAGTTGTCAAGAATAACC
AAACTTGGCGTCGCACCTTAAAATCAAGACAAAGCGCGGAAACAGCACTC
TGACTATTAAGTGTAACCCATGTGAGAAAATACTTTATTGAGTACAGACA
TAAAATGTGTTGTAATATGTGACGAAGATGACAATTTTATCGACTTGATA
AATGAGATGATATATACGAATATATCATCAGCTATTGCAATCACCGCCCC
TGAGGTCTGAATTGACCCCGCCTGTAATCGGCGCACCCTTTAAATCCACA
GGTTGTCTGTCCTTATGTCCACTATTTGGCCTGGCAAAGCCGAAATCCTG
TGTGCTGCGTCACCAATACACGTTGCGGGGCAGTTTTGGAATATGACCAT
GGTAATAAGGGTGTTACTAATACTTGCTTACTGTGTGTTGACGACTCTGC
TGCTAACTACCTCTGTTGCGTCTGTTTCTCTTCGCCTGCAGTTCCTGACG
GTGCGATGGTGTGTCGAAAATTTGGACTTCGTCGAAGTCGTGATGAAGTA
AGCAAACCTGTCCTGTTCTTCAGTATGGCTTGAAATGTTGGACCTGTGGT
TTAAAAAACTTGAATCTCTTTGTTTCGACTTTACTGAGAAAAATCAGGTT
AATTGTGAGGATCGTGAGGTTTTGCCTGCGAATTTCTTCTTGAGTGATTT
GATCTTGAGTGGTCCATTTTTCATTTTTTATTTTTATGTTTTGAGTGGGT
TTTTGTAAACGGGGTTGCAGTGCAAGAGTATGTGCGTTTTGATGCTCCGT
GATTTCTTGTGCCGTTTCGATCCCAGGATCCTTTCAGTGTGTGATATTGA
GAGGGGCTTTTTTTGTTTAACTTGAGGGTGCCAAGGCACCTTTGTTCACT
TTTTTGCGCAACTCCTTTTTTTGCGTTCGAATTTCGTTTCACGTAAACAT
CAATTTGGGTTTTGTATCAATCTTTGTGTTTGTGTTTGTGTTTGCCTTTT
ACACTTCCTGTCGCTCCATGCACGACGACGGTGACGATCACAAAACAGTT
ATCAGACAATGATAAATGAGGTCGGCTCGCGAGATCCAGGCGCCTTAGCT
CTAGGCAAACATATCGAAGATATGTTCATTGCAAGGGGATCCCCAAGAGA
GGTGAGATGGTGGTACCTGTATCAGCGTTAGTATCTTCTTTCTACCAAAC
TGTGGCAATATGTGCCCCCCCCCCACCCACCCTTTCGAATATTTGTTTGA
TTTTGGGGACGGGTTTTTCACGGTCAACGTTTTTTTTTTTTTTTTTTCTT
ATCACGGGCAAGACTGCGTAAAAGTTGCATACCAGTGGCTTATGCCGTGC
CAATGGGGACATTGCCAATATCACTGCCACTGACACGAACCTTACAATCG
AGAACATCTTTGGTGTCTTCTCGCGCAAAAGATGCATGTACTGTTGCTCC
CATCACTTGGTCGCCAAAATGTCAGGGGGGCAAAAAAGGTTCCACTGGAG
CCTCTTTTTATTCCTCCATAGTTTTAGTTTACTGGGATAGCACTCGTGGT
GTATCTAGATGTTTGTCCTGTTTCTGTCAACTCAAACGACTTGTTTCTCA
GTTCGGAATATTGGTATTGAGTACACAGACAGGAGTAAGATTCAATTTAA
CTCCCAGTTGATTGCTATACACCTCGTTTTTTGTTTTTTGTTTTTTTTTC
TTGGGGGCGGCGGCGGGGGGGGTATATGGTATATCAACAAAGGTCAACAT
TGGGCAAGACATGCGTGAGCGTTGTCTAAAAAGTCGGAGTCGAGATGTGG
AAATGGGTCAAGCTTCGATGGCTACGTTCGACGCCGTGGCATTTGAGCTG
ATATTATGTGAGTGTTGTTTCTTCTTGTGTGGTATCATGGCGCGCCGTTT
CGCCGCCGTGTTATTTTCATTGAGTTTCAATTCAGTAAGTCGTCCTTTTT
TTTTTCAAGCTGTTTTTATTTTATTTTTTATATATATATATATATATATG
CTGAGTTTGTTATTCATGCTAATGATGAGCAAGATTCGAGAAAAACGGGG
TGGTTTGCGTCGTCTTTTACTTTTTTACTTATGTCAAGATGTTATTAATA
AATAGGTTCTTCAGATTTAATGGATATTTCTTTTCTTTGGGAATTTTGTT
CGAAATGTGCTTCGTGATTTAATCTTGTCCTTGCACGTCTTGTCAGTCGA
CAGATATGCTATCTAACGGGTCTCCCTCTCCTACTCCTCTCTCTTTTCCC
CCTCCTCCTTCTCGTTCTCGCCGCTGCGTCATCTCGCCTCGCTCGCTCGG
TCACCTCCTCGCTCATTTCACAAGTGATGAACCACACGACCATGCGAGAC
TTCAAGGAATCTGCAGCCTACTCGGCTATCGAGGCGTGCCTGCAGGAAGG
CCCCCGAGACACGAGGTTCAGTGGCGCCACCTCGAGCTTGACCTACGATG
AGGATGAGCTGGTAGAGGCAGACAACGACTACCAGGGGATGAGTGCCCGA
TCCCGCGAGCGGGGGCTCCTTTCTGAAGCGCAGCACCATGTCGCAGACTG
GTACGGGTTGGATGTGGAAACAGTGGCTAGGCCCAACACTTGGAGTTAGG
AGCTAGCTAGGTGCTACCCGTGGGAAGGACGAAGTTCGAGTGAGCGCTGT
CTGCTTTCGTTTACCCGCTGGTCTGGTCTGGTTTGGTCTGTCTTTACTCT
GCTCTGGAACTAGTTTATGTGTTTTTTGTGTTTTCCAAATGAAAAGAGGG
AAAGAGCTACCGCCGCACGGCTTTTTTTTTTGGTTTGTTTGGTGAGAGGA
TCTTGGAGGCTCGGAGCGGAGATCATTACACTCATGTTTTTTTTGGGTGC
GGTCGATTTATCCCCTCGAGATATGGATAATGAATGTGTTTGTTGTAGGC
AGGTGGTGTGGTGTCACTCGAGCAGTGGTAGTATAGGTATTTTGGCGATA
GTGGGAGGTGTGTGGCTTGCTTGCGTTGTGTTTTCACACCTCGTTTTGTT
TTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTATTTCG
TTTTACGCAGATGCAGCAGTTGTTTCTTGTTTCAGAAATACAGCAACTTG
CAGCAAAACCTCTTGATTCCTCTCGTGCCGTATGTCGAGGCTCGAATCTT
TTTTGTCCCCCGGTCTTGTTTTTGGTTATACGGTTGTCTATAGTGTCGTT
TTCATGTATATGTATTATTTCCCCCAGCAGAAAAAGTATGCGCGAAAAGC
TGTATGCATGAGGGGATATGTGTTTGTGAAAATAGAGTGTTTTCTCCTTA
CTGCTAAATGTGGATAGGACAGGTGGTGTGTTTCCTATTCAATCCCGCGC
GTCATTTGAGCAAGCGGGGCTACTTTTTTTTTTGTTTTTATCTGGAAGAA
ACTTTTGTCGAAATCGCTCTCTATATGACAATTTGTCCCGTGGTTTTCGA
TTTAGTTGTTTTTCGATATTACGGTGCCCTGTGCTCGTGACGGCCGATTT
CTAAGTATTCGGTAGGTGCCATTTTCGTCTCCTAAAATTCTCGGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3866:10957..17003+

>mRNA_H-paniculata_contig3866.10101.1 ID=mRNA_H-paniculata_contig3866.10101.1|Name=mRNA_H-paniculata_contig3866.10101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5328bp|location=Sequence derived from alignment at H-paniculata_contig3866:10957..17003+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAATTCGAAGATCCTTCTTCTCCAAGCCCGCAACCCCGCCCCGATT
CCGCCAAAGCAATCACAAGACGAAAGTCCTGGATCACCATGCGCTCGCGG
CAGCAGCAGCTGCCGCCGCTGTCGCCGTCGCGCCGCCACCTGGAAGCAGC
AACACCGCACCGAAAGTAGCCCTTGCCGAGGACCCAAAGAAGAAACTTGG
ACAGTCCACGCGCAGCCTCGAGGATGGCAAGGGTGGGGGCAGGAGCGGCG
ATGCAACCGGCGACCCCGCCTTGTCTCAGTTCGCCGAATTCCCGCGGCGC
GCCCCCATCGTTAACGCGCACGAAGAATGTGAAGAGCGCCGGCGTCGGTG
TTCGACTTCGGACAATTGTTGTAACGCTCCGGTCCCAACGCCCCGCCCGC
CGGCGGCACCCGGTGTCAAGCCCATTTCGGGACGGCCACTGTTATCGCGG
ACGGCGGGCATGGGTGGATCGTCTGGATTTTGGCCGTGGACCCGAGGAGG
ACCCACAGCTCCTGAAACCGCAACCGGCAAGAGTAGAGATGATTTCAACG
GACGGTCAGAACCGAGGATTGGGATGGGCATGGGGCTTGATACTAGGACT
GCGAGAGCAGCATCGGCGGTGGCGAAATCGTCGCGGACCATACAGGCGGG
GTTGTCGTCGGAATCGGAAATTTCTTTTAGTGAAGGAGGATCGGACTCGG
GGTTCCCCGCGGCAGAATCATCGTCGCCGTTAACAACGATGGAAAGCGCG
TGTGAACTGGCCGAATCATTGAACTTGGCTGGAGTTGCTCGGGGAGCGGA
TCTTGCGGCGGGATCGGTGTTATTACGTTCTCGGCTGGAGGGACCGCCGC
CGTGGGGGCATGGACTGCACAGATCTAATAGTGTGGAGGGTCCACTAAAC
ACTGAGAGTGATGGTGGTAGTCATGAAGATGACGTTGAGGATGATGAGGA
GGAATTCATGTGCGAGCGGACAAGACGAGAGGGCTATAACGTTACGGACC
AGTTTTTCCTGGAGAGCGCCCGCCGCCAGAGGGCGACGGGGGGGAACAGA
GAAGAGTTGCAGTTGAAACGCTACTTCGCGACGCCCGATCGCAAGATGGA
GGAAGCCACAGCAGAGGCCTCAGAACAAGAACAAAATGAAAGCATCAGCA
GGCACTCGAGGCAACAGCTACATTCTGTGGCGGAGGAAGATTCAGGGCAG
TGTGTAGACGGGGAGGAGGAAGGAGGCGTGTTTGATTCCAACCGCTCGGA
GGAGAGGAATCACCGACGGTTGTGGAGCAACCCTTGGGAAGCGGTTGCTT
CCGCGATCCGGGGGAATCCCGCGCGGTCATCGGCTTCTTCTACGGGAGAA
GGCCGAGAAGGAGGGGAAAGCGGCGGCAGCGTTAGCGGTGGCGAGGATCG
AGGGAGATCGGAATCGGTGCCAGTAGCCACAGTCGTGACGCCTAGGTTGG
AACGCGCCCGCAGCGGCGGTAGCTTGTCAGGTAGTATCATGACCCGGATG
AGGTTTGGGGCCCTTCGCGAGCGTAATGGCAGCGGCGCCGGCCGCAACGT
GGGTACTAGAGATGACTCCCCAGCTGGCGCTAGAGATGCGCCGGATCGTA
AACCTTTGGCGCCTTCATCTGTCACCGACGTGCACCGGGTCGAGCGGAGC
TCCGTGTCCAAGATTGTCTCTGGTGGCGCTCGCATTTTGGGGGGAAGGGT
TACCGATCGTCACCGGAAAGGAGAAGCGCAATTGAACCGCAGGTGTGTAG
TGGGAATGGTGGAGTCGGTTGGGCAGAGGGTAGAGGAGAATATGACGACA
GTGGAATCAAAGCCCCCGCACAGGGTTGTCGGTGCTGCGGAGCGGGCGCG
AGTAGAACATGGTTGGATGGAAGCGGACGGCGGCTTGGGAGAGCGGGAGA
CGATCACGGGCGATGATGACGGCAGCGGCCAAGGCAGCGGCGGCGGCGGT
GGCGGCGGCGATGCCAGTAGAAGAGCCCCGGCGGGCACCGAGAAAAAACA
GAGCGACGGCGCGTGCTGCACGCTGCTGTACTCTGAGTTTTTTTGCAGGT
CGAATGGAACGGAAGCGATCGGGTTGATTTTGAGGAACGAGGACATGAGA
TTGGCGTTTAAGGAGATGCGAATTCGAAGATCCTTCTTCTCCAAGCCCGC
AACCCCGCCCCGATTCCGCCAAAGCAATCACAAGACGAAAGTCCTGGATC
ACCATGCGCTCGCGGCAGCAGCAGCTGCCGCCGCTGTCGCCGTCGCGCCG
CCACCTGGAAGCAGCAACACCGCACCGAAAGTAGCCCTTGCCGAGGACCC
AAAGAAGAAACTTGGACAGTCCACGCGCAGCCTCGAGGATGGCAAGGGTG
GGGGCAGGAGCGGCGATGCAACCGGCGACCCCGCCTTGTCTCAGTTCGCC
GAATTCCCGCGGCGCGCCCCCATCGTTAACGCGCACGAAGAATGTGAAGA
GCGCCGGCGTCGGTGTTCGACTTCGGACAATTGTTGTAACGCTCCGGTCC
CAACGCCCCGCCCGCCGGCGGCACCCGGTGTCAAGCCCATTTCGGGACGG
CCACTGTTATCGCGGACGGCGGGCATGGGTGGATCGTCTGGATTTTGGCC
GTGGACCCGAGGAGGACCCACAGCTCCTGAAACCGCAACCGGCAAGAGTA
GAGATGATTTCAACGGACGGTCAGAACCGAGGATTGGGATGGGCATGGGG
CTTGATACTAGGACTGCGAGAGCAGCATCGGCGGTGGCGAAATCGTCGCG
GACCATACAGGCGGGGTTGTCGTCGGAATCGGAAATTTCTTTTAGTGAAG
GAGGATCGGACTCGGGGTTCCCCGCGGCAGAATCATCGTCGCCGTTAACA
ACGATGGAAAGCGCGTGTGAACTGGCCGAATCATTGAACTTGGCTGGAGT
TGCTCGGGGAGCGGATCTTGCGGCGGGATCGGTGTTATTACGTTCTCGGC
TGGAGGGACCGCCGCCGTGGGGGCATGGACTGCACAGATCTAATAGTGTG
GAGGGTCCACTAAACACTGAGAGTGATGGTGGTAGTCATGAAGATGACGT
TGAGGATGATGAGGAGGAATTCATGTGCGAGCGGACAAGACGAGAGGGCT
ATAACGTTACGGACCAGTTTTTCCTGGAGAGCGCCCGCCGCCAGAGGGCG
ACGGGGGGGAACAGAGAAGAGTTGCAGTTGAAACGCTACTTCGCGACGCC
CGATCGCAAGATGGAGGAAGCCACAGCAGAGGCCTCAGAACAAGAACAAA
ATGAAAGCATCAGCAGGCACTCGAGGCAACAGCTACATTCTGTGGCGGAG
GAAGATTCAGGGCAGTGTGTAGACGGGGAGGAGGAAGGAGGCGTGTTTGA
TTCCAACCGCTCGGAGGAGAGGAATCACCGACGGTTGTGGAGCAACCCTT
GGGAAGCGGTTGCTTCCGCGATCCGGGGGAATCCCGCGCGGTCATCGGCT
TCTTCTACGGGAGAAGGCCGAGAAGGAGGGGAAAGCGGCGGCAGCGTTAG
CGGTGGCGAGGATCGAGGGAGATCGGAATCGGTGCCAGTAGCCACAGTCG
TGACGCCTAGGTTGGAACGCGCCCGCAGCGGCGGTAGCTTGTCAGGTAGT
ATCATGACCCGGATGAGGTTTGGGGCCCTTCGCGAGCGTAATGGCAGCGG
CGCCGGCCGCAACGTGGGTACTAGAGATGACTCCCCAGCTGGCGCTAGAG
ATGCGCCGGATCGTAAACCTTTGGCGCCTTCATCTGTCACCGACGTGCAC
CGGGTCGAGCGGAGCTCCGTGTCCAAGATTGTCTCTGGTGGCGCTCGCAT
TTTGGGGGGAAGGGTTACCGATCGTCACCGGAAAGGAGAAGCGCAATTGA
ACCGCAGGTGTGTAGTGGGAATGGTGGAGTCGGTTGGGCAGAGGGTAGAG
GAGAATATGACGACAGTGGAATCAAAGCCCCCGCACAGGGTTGTCGGTGC
TGCGGAGCGGGCGCGAGTAGAACATGGTTGGATGGAAGCGGACGGCGGCT
TGGGAGAGCGGGAGACGATCACGGGCGATGATGACGGCAGCGGCCAAGGC
AGCGGCGGCGGCGGTGGCGGCGGCGATGCCAGTAGAAGAGCCCCGGCGGG
CACCGAGAAAAAACAGAGCGACGGCGCGTGCTGCACGCTGCTGTACTCTG
AGTTTTTTTGCAGGTCGAATGGAACGGAAGCGATCGGGTTGATTTTGAGG
AACGAGGACATGAGATTGGCGTTTAAGGAGTTCCTGACGGTGCGATGGTG
TGTCGAAAATTTGGACTTCGTCGAAGTCGTGATGAATTCCTGACGGTGCG
ATGGTGTGTCGAAAATTTGGACTTCGTCGAAGTCGTGATGAATTATCAGA
CAATGATAAATGAGGTCGGCTCGCGAGATCCAGGCGCCTTAGCTCTAGGC
AAACATATCGAAGATATGTTCATTGCAAGGGGATCCCCAAGAGAGTTATC
AGACAATGATAAATGAGGTCGGCTCGCGAGATCCAGGCGCCTTAGCTCTA
GGCAAACATATCGAAGATATGTTCATTGCAAGGGGATCCCCAAGAGAGGT
CAACATTGGGCAAGACATGCGTGAGCGTTGTCTAAAAAGTCGGAGTCGAG
ATGTGGAAATGGGTCAAGCTTCGATGGCTACGTTCGACGCCGTGGCATTT
GAGCTGATATTATGTCAACATTGGGCAAGACATGCGTGAGCGTTGTCTAA
AAAGTCGGAGTCGAGATGTGGAAATGGGTCAAGCTTCGATGGCTACGTTC
GACGCCGTGGCATTTGAGCTGATATTATTGATGAACCACACGACCATGCG
AGACTTCAAGGAATCTGCAGCCTACTCGGCTATCGAGGCGTGCCTGCAGG
AAGGCCCCCGAGACACGAGGTTCAGTGGCGCCACCTCGAGCTTGACCTAC
GATGAGGATGAGCTGGTAGAGGCAGACAACGACTACCAGGGGATGAGTGC
CCGATCCCGCGAGCGGGGGCTCCTTTCTGAAGCGCAGCACCATGTCGCAG
ACTGGTACGGGTTGGATGTGGAAACAGTGGCTAGGCCCAACACTTGGAGT
TAGTGATGAACCACACGACCATGCGAGACTTCAAGGAATCTGCAGCCTAC
TCGGCTATCGAGGCGTGCCTGCAGGAAGGCCCCCGAGACACGAGGTTCAG
TGGCGCCACCTCGAGCTTGACCTACGATGAGGATGAGCTGGTAGAGGCAG
ACAACGACTACCAGGGGATGAGTGCCCGATCCCGCGAGCGGGGGCTCCTT
TCTGAAGCGCAGCACCATGTCGCAGACTGGTACGGGTTGGATGTGGAAAC
AGTGGCTAGGCCCAACACTTGGAGTTAG
back to top