mRNA_H-paniculata_contig38645.10099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38645.10099.1
Unique NamemRNA_H-paniculata_contig38645.10099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38645.10099.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 7.960e-24
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VRLASLMLIASL----FVRTSSNLMKLPSMASKAVVDPPSYTPGKHHWVAAPSRWDPQTCGICNNAIAWVSDAGVKCSV 225
            +RL SL + AS+      RTS +L+KLPS ASKAV DP SYTPG+H+WVAAPSRWDP  C +C+ AIAW SDAGV+C +
Sbjct:   95 IRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQI 173
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BLAST of mRNA_H-paniculata_contig38645.10099.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.130e-24
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 VRLASLMLIASL----FVRTSSNLMKLPSMASKAVVDPPSYTPGKHHWVAAPSRWDPQTCGICNNAIAWVSDAGVKCSV 225
            +RL SL + AS+      RTS +L+KLPS ASKAV DP SYTPG+H+WVAAPSRWDP  C +C+ AIAW SDAGV+C +
Sbjct:  105 IRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQI 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38645.10099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU9_ECTSI7.960e-2462.03Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
A0A6H5LB27_9PHAE8.130e-2462.03Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38645contigH-paniculata_contig38645:373..1870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LHU9
Preferred nameDGKK
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009611,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0023052,GO:0030168,GO:0032501,GO:0035556,GO:0042060,GO:0044237,GO:0044238,GO:0044255,GO:0044464,GO:0046339,GO:0046486,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0071704,GO:0071944
EggNOG free text desc.diacylglycerol kinase activity
EggNOG OGsKOG1170@1,KOG1170@2759
Ec32 ortholog descriptiondiacylglycerol kinase
Ec32 orthologEc-18_000560.1
EC2.7.1.107
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size225
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38645.10099.1prot_H-paniculata_contig38645.10099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38645 373..1852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.4892223-CDS-H-paniculata_contig38645:372..4901622930186.4892223-CDS-H-paniculata_contig38645:372..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38645 373..490 -
1691481182.9255004-CDS-H-paniculata_contig38645:372..4901691481182.9255004-CDS-H-paniculata_contig38645:372..490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38645 373..490 -
1622930186.5068877-CDS-H-paniculata_contig38645:1763..18521622930186.5068877-CDS-H-paniculata_contig38645:1763..1852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38645 1764..1852 -
1691481182.9413722-CDS-H-paniculata_contig38645:1763..18521691481182.9413722-CDS-H-paniculata_contig38645:1763..1852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38645 1764..1852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.5202887-UTR-H-paniculata_contig38645:1852..18701622930186.5202887-UTR-H-paniculata_contig38645:1852..1870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38645 1853..1870 -
1691481182.9524956-UTR-H-paniculata_contig38645:1852..18701691481182.9524956-UTR-H-paniculata_contig38645:1852..1870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38645 1853..1870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38645.10099.1

>prot_H-paniculata_contig38645.10099.1 ID=prot_H-paniculata_contig38645.10099.1|Name=mRNA_H-paniculata_contig38645.10099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MLIASLFVRTSSNLMKLPSMASKAVVDPPSYTPGKHHWVAAPSRWDPQTC
GICNNAIAWVSDAGVKCSV
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mRNA from alignment at H-paniculata_contig38645:373..1870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38645.10099.1 ID=mRNA_H-paniculata_contig38645.10099.1|Name=mRNA_H-paniculata_contig38645.10099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-paniculata_contig38645:373..1870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGTCTAGCATCGTTGATGCTCATCGCTTCCCTGTTCGTCAGGACAAG
CTCTAACTTGATGAAGCTTCCATCCATGGCGTCCAAGGCAGTCGTGGATC
CTCCCAGGTATTGAGCAGGACTTACCAGAGGCAGTTAGTGTGGATTGTAT
GTACCCTTTATGTAGGATGATTTGATGTGTATTTTCAGGTACTGTGCTAT
GCAGTCAGGAAGTGTTTTGTATAACTAGAGCTGGAGAGAGCTGATTCGAT
GATATTTTTGATTTTACGCCGATGTGATGCTTCACAGTTTGTTTTTTTTT
TGTCAACCATGGTTGTCATGATGATGATGATACGTTTCGGAAATATTATA
TTTTACTGAATCCATGAAGTGTTCGCTTCTCGTGAGATTTTGATGATGAT
AATGATAATGGTCGTTTCGGGATATTTTTTGTATACTTTATCCAAGTGTG
TTTGCCTCTCGTGAGATTTTGATGATGAATGATGATATTGGGCGTTTCGG
AATATTTTTTCTGTACGTTATCCAAGTGTTTTCTTCTTGTGAAATTTGAT
GATCAATGATGAAAATTGTCGTTTAGAGATGGCTTTTCCTATACTTTGTC
CAAGTGTTTTGCTTCTTCGTGAGATGGATCGACGATGATAACGGTCGTTT
CGGATTAGTTTATCTTCACGTTATCCAAGTGTTTGCCTCGCGCGAGATTG
ATGATTAATGAGGATAACGGTCATTTCGGAATAGTTTTCTATACTTTACT
CGAGTGTTTATTCCTCCTAATATGGATGTTTATGATTATGATAATTGTAC
CGGGTCCTTTCGGAACAGCTTCCATACTTTGACCTCCATAAGTACGTTTG
TCGGTGCTTTTGAGCGCTATTTAAGGGTATACACAGGAATAGGGTACCTT
AGATTGCTGGCCTCAGGCGAGATGTTTTTATCGTATCAGTGGCATGGAGA
TGCCAAAAAAAAAGCAAAAAAAAAAAAAGCTGTCTTTGACGTGGATTGTA
CTTTCTTCTTGCAGACACCTGTCAATCGTCTCCTAGATTATTTTCACGTC
ATATTTTTCATTCTTGTTTTTTTTTTTTTTTTCCTTGGTGTGATTTTCCG
GGAACTTATCTCCTACAATTAAATAAACCAACAAGAAATTAATACCCTTT
TTGGCATTTCACGATTTCAACGATTTTTTGAAATTGAAAGGATTCAATTA
AAAAATAAAAACTTTCATAATGTAGAGAGTTACCCGGTACGAGGGTAAAT
TACCACACAAGCGTCTGTTCAGGACAAGACAGATTTTTTTTCAGCTTTTT
TTTTTTTTTGGTTTATATAATTCACAGGTATTGTCAAAATCATTATGTGT
GTCGTATCGTTCTTTCCTCCGCCAATCCAGCTACACTCCAGGGAAGCATC
ACTGGGTGGCTGCCCCGTCCCGATGGGACCCCCAAACGTGCGGAATTTGT
AATAACGCCATCGCGTGGGTTTCCGATGCTGGAGTCAAGTGTTCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig38645:373..1870-

>mRNA_H-paniculata_contig38645.10099.1 ID=mRNA_H-paniculata_contig38645.10099.1|Name=mRNA_H-paniculata_contig38645.10099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig38645:373..1870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCATCGCTTCCCTGTTCGTCAGGACAAGCTCTAACTTGATGAAGCT
TCCATCCATGGCGTCCAAGGCAGTCGTGGATCCTCCCAGATGCTCATCGC
TTCCCTGTTCGTCAGGACAAGCTCTAACTTGATGAAGCTTCCATCCATGG
CGTCCAAGGCAGTCGTGGATCCTCCCAGCTACACTCCAGGGAAGCATCAC
TGGGTGGCTGCCCCGTCCCGATGGGACCCCCAAACGTGCGGAATTTGTAA
TAACGCCATCGCGTGGGTTTCCGATGCTGGAGTCAAGTGTTCGGTGCTAC
ACTCCAGGGAAGCATCACTGGGTGGCTGCCCCGTCCCGATGGGACCCCCA
AACGTGCGGAATTTGTAATAACGCCATCGCGTGGGTTTCCGATGCTGGAG
TCAAGTGTTCGGTG
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