mRNA_H-paniculata_contig38627.10097.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38627.10097.1
Unique NamemRNA_H-paniculata_contig38627.10097.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig38627.10097.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-19
Identity = 58/133 (43.61%), Postives = 83/133 (62.41%), Query Frame = 2 
Query:    5 NHLRYNADMVMLAHNDPGDGAGFTCNKRILVDDLNRNSSGPVRAPLTLMNDIPVESAKTDIPPRCCLLLVNRYSNMGDAIISLGAESNQIMKTALDRARKGEVFVASSDGAREEVARRAETAFLAAYKEAKFK 403
            NHL+ + DMV+L HN+   GA FTCNKR+ VDD     S    + + LM D+  E A TDI  R    L+NRY++ GD + SL AE + +++ AL+R+R+ EVFVA+ +  +EEV +    +F  AYK  K+K
Sbjct:  445 NHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSDASPS-MQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNS-KEEVRKNLLASFSRAYKAGKWK 572
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38627.10097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBJ9_9PHAE1.020e-1943.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38627contigH-paniculata_contig38627:1010..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38627.10097.1prot_H-paniculata_contig38627.10097.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38627 1010..1728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.1428046-CDS-H-paniculata_contig38627:1009..11931622930186.1428046-CDS-H-paniculata_contig38627:1009..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38627 1010..1193 -
1691481182.7882006-CDS-H-paniculata_contig38627:1009..11931691481182.7882006-CDS-H-paniculata_contig38627:1009..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38627 1010..1193 -
1622930186.16298-CDS-H-paniculata_contig38627:1537..17281622930186.16298-CDS-H-paniculata_contig38627:1537..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38627 1538..1728 -
1691481182.8003938-CDS-H-paniculata_contig38627:1537..17281691481182.8003938-CDS-H-paniculata_contig38627:1537..1728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38627 1538..1728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.1916866-UTR-H-paniculata_contig38627:1728..17561622930186.1916866-UTR-H-paniculata_contig38627:1728..1756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38627 1729..1756 -
1691481182.8105357-UTR-H-paniculata_contig38627:1728..17561691481182.8105357-UTR-H-paniculata_contig38627:1728..1756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38627 1729..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38627.10097.1

>prot_H-paniculata_contig38627.10097.1 ID=prot_H-paniculata_contig38627.10097.1|Name=mRNA_H-paniculata_contig38627.10097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MVMLAHNDPGDGAGFTCNKRILVDDLNRNSSGPVRAPLTLMNDIPVESAK
TDIPPRCCLLLVNRYSNMGDAIISLGAESNQIMKTALDRARKGEVFVASS
DGAREEVARRAETAFLAAYKEAKFK
back to top

mRNA from alignment at H-paniculata_contig38627:1010..1756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38627.10097.1 ID=mRNA_H-paniculata_contig38627.10097.1|Name=mRNA_H-paniculata_contig38627.10097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig38627:1010..1756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCAATCATCTACGTTACAATGCAGACATGGTGATGTTGGCACACAACG
ACCCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCGTATACTGGTGGAC
GATCTCAACCGCAACAGCAGCGGTCCCGTCAGAGCACCCCTCACATTGAT
GAACGACATTCCTGTGGAGAGTGCCAAGACGGATATACCACCTAGGTGTT
GCCTGCTCCTCGTTAACAGGTGAAAATAGTTGTTACTACTTAACAGGGAT
GTGGTTCATGTTTGCAGATTCCTCATTTTAAGGCTGCATGTTTTTCTCTT
CTATGTGGATGTTGTAGTTGGAGCGCTCTGCAACCATCACGAGCATAATA
GTAAGTAACTAGAGAACTGATGTGGGGGCGTCATTGTGACCATCTAAAAA
AAGTCTTGTGTTGACACGCCATACAGACACCACCACGAGATACCTGCTAT
ATGACAATGAGGTATACTGGTTAGGCCTTGGTCATGTACTTGGCAAAAAT
CCCTTCTTTGCCAACTTATCGTCAGTACTACTGATCATGCCTTGTTCTTA
TTTGGTATGGCAGGTACTCCAACATGGGAGATGCAATCATATCGCTGGGC
GCTGAGAGTAATCAAATTATGAAGACGGCGCTTGATCGTGCGAGGAAGGG
TGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAAGGC
GAGCAGAAACGGCTTTCTTGGCGGCTTACAAGGAGGCGAAATTCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig38627:1010..1756-

>mRNA_H-paniculata_contig38627.10097.1 ID=mRNA_H-paniculata_contig38627.10097.1|Name=mRNA_H-paniculata_contig38627.10097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig38627:1010..1756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCACGTG
CAACAAGCGTATACTGGTGGACGATCTCAACCGCAACAGCAGCGGTCCCG
TCAGAGCACCCCTCACATTGATGAACGACATTCCTGTGGAGAGTGCCAAG
ACGGATATACCACCTAGGTGTTGCCTGCTCCTCGTTAACAGATGGTGATG
TTGGCACACAACGACCCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCG
TATACTGGTGGACGATCTCAACCGCAACAGCAGCGGTCCCGTCAGAGCAC
CCCTCACATTGATGAACGACATTCCTGTGGAGAGTGCCAAGACGGATATA
CCACCTAGGTGTTGCCTGCTCCTCGTTAACAGGTACTCCAACATGGGAGA
TGCAATCATATCGCTGGGCGCTGAGAGTAATCAAATTATGAAGACGGCGC
TTGATCGTGCGAGGAAGGGTGAGGTCTTCGTGGCTTCTTCTGATGGTGCG
CGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAA
GGAGGCGAAATTCAAGGTACTCCAACATGGGAGATGCAATCATATCGCTG
GGCGCTGAGAGTAATCAAATTATGAAGACGGCGCTTGATCGTGCGAGGAA
GGGTGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCGAGAAGAGGTTGCAA
GGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAAGGAGGCGAAATTCAAG
back to top