mRNA_H-paniculata_contig3861.10096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3861.10096.1
Unique NamemRNA_H-paniculata_contig3861.10096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE)

HSP 1 Score: 883 bits (2281), Expect = 0.000e+0
Identity = 437/537 (81.38%), Postives = 477/537 (88.83%), Query Frame = 1
Query:    1 QTRFVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQVVWKLEDPAVLARERQQREQEKV 1611
            +TRFVPKD +RVLWYMCGPTVY  SHMGHARTYLHFDILRR+MTDFFGY+V++ MNITD+DDKIITRANE G N+RELAAHFE DYMQDMA LGVRAP VVTRVSEFIPEVV YIQ I+DNGYAYESNGSVYFNVQ+FDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAGDK+S GDFALWK+SREGEPSW SPWG+GRPGWHIECSVMAS+TFE MGDGTMD+H+GG DLKFPHHDNE+AQAEAKYDC QWVNYFLHTGHLHIKGFKMSKSLKNFITIK AL EHS+RQIRLLFLLHKYNTPMDYGDD MSGAL AE+TF+EFFHN+KAALRR+T +D  R  EPELTLM+ L+D K EV++CLCDDFDTPGA+ ALQELVK VNKY+E K + GEPIVA CVRGA EYVTKIFK+FGL S G +LGFS       XXXXXXXXX         SREA+LGPVLD+LSEFRDK R CGRAGD  GVLAACD+VR+++LP VGVRLEDKGDQ VWKLEDPAVLARERQQREQE++
Sbjct:   50 KTRFVPKDSNRVLWYMCGPTVYAPSHMGHARTYLHFDILRRVMTDFFGYDVSLCMNITDIDDKIITRANEGGQNYRELAAHFEEDYMQDMALLGVRAPTVVTRVSEFIPEVVEYIQGIIDNGYAYESNGSVYFNVQSFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAGDKRSSGDFALWKRSREGEPSWPSPWGDGRPGWHIECSVMASATFEGMGDGTMDIHSGGVDLKFPHHDNEMAQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQEHSSRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVKAALRRTTARDPARTKEPELTLMSSLSDAKKEVKKCLCDDFDTPGAMGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDAGGXXXXXXXXXE-------ASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQAVWKLEDPAVLARERQQREQEQL 579          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A835Z463_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z463_9STRA)

HSP 1 Score: 728 bits (1878), Expect = 2.970e-257
Identity = 355/532 (66.73%), Postives = 414/532 (77.82%), Query Frame = 1
Query:   10 FVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGAL-SLGAGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVAL-QELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQVVWKLEDPAVLARERQQRE 1599
            F+PK+  RVLWYMCGPTVYD SHMGHARTYLHFDILRRIM D+F Y V +VMNITD+DDKII RAN+R +NFR+LA+HFEADYM+DM +LGVR P+ +TRVSEF+PEVV YI+ ++ NGYAYESNGSVYF+VQAF   KGH Y KLLPEG+GN ELMAEGEGAL S GAGDK+S  DFALWKKS+EGEP W+SPWG GRPGWHIECSVMAS TFE  GDG MD+H+GG DL+FPHHDNEIAQAEA Y+C QWVNYFLHTGHLHIKGFKMSKSLKNFITIK AL  H+ RQIR+ FLLHKYN PMDYGD+ M+GAL  E+TF EFFH +K+ +R +T  D LR+ E E+ L  +L + K  VR  LCDDFDTP A+  L  +LV+ VNKY++ K+  G       VR AGEYVT+IFK+FGL ++GV +GF                      E   SRE  +GPVLD LS FR + R C RAGD+AGV++ACD VRDD LP +GVRLEDKGDQVVWKLEDPAVLA E+ ++E
Sbjct:   45 FIPKEGQRVLWYMCGPTVYDGSHMGHARTYLHFDILRRIMADYFNYNVVLVMNITDIDDKIILRANQRNLNFRDLASHFEADYMEDMKALGVRPPEHITRVSEFVPEVVAYIEQVIANGYAYESNGSVYFDVQAFHKHKGHHYGKLLPEGLGNAELMAEGEGALTSCGAGDKKSQSDFALWKKSKEGEPQWESPWGGGRPGWHIECSVMASKTFELYGDGCMDIHSGGVDLRFPHHDNEIAQAEAHYNCAQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQTHTARQIRMCFLLHKYNDPMDYGDNTMAGALAIERTFVEFFHAVKSVVRAATAVDELRLGEGEIALYRKLEECKSGVRAALCDDFDTPTAIKLLASDLVRTVNKYIQEKTDAGLKSHYIVVRTAGEYVTRIFKVFGLVTSGVDMGFDVEQ------------------EGGISREEAMGPVLDALSTFRTQVRTCARAGDSAGVISACDQVRDDALPPLGVRLEDKGDQVVWKLEDPAVLAAEKAKKE 558          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A7S1FUV2_9STRA (Cysteine--tRNA ligase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUV2_9STRA)

HSP 1 Score: 595 bits (1533), Expect = 3.000e-205
Identity = 308/527 (58.44%), Postives = 374/527 (70.97%), Query Frame = 1
Query:   28 SRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAG-DKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMG--DGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAG--SREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQVVWKLEDPAVLARERQQ 1593
            + V WYMCGPTVYD SH+GHARTYL FDI+RRIM+ +FGY+V +VMNITD+DDKII RANER ++F +L+   EA +++DM+ LGV  PDV+TRVSE++PE+V YI DIV  G+AY SNGSVYF+V AF   + H Y KL PE +GN EL+AEGEGAL+   G +K++P DFALWK+S+EGEPSW+SPWG GRPGWHIECSVMAS  F  MG   G MD+H+GG DLKFPHHDNE+AQAEA+    QWVNYF+H+GHL IK  KMSKSLKNFITI+ AL  ++ RQIR+LFLLHKYN PMDY DD M+ A   EK+F+ FF N+K ALR ST + S +  E E  L   +   +  VR+ L DDFDT  A+ ALQ+LVKAVNKYLE +    + IV+  VR A  YVT++F++FGL SAG  +GF                      E AG  SRE VL PVLD + EFR  AR   R GDA GVL  CD  RD +LP +GVRLEDK +  VWKL DP  L RE +Q
Sbjct:   56 NNVKWYMCGPTVYDVSHLGHARTYLGFDIIRRIMSSYFGYDVTLVMNITDIDDKIILRANERDISFTDLSRENEAGFLEDMSLLGVDPPDVLTRVSEYVPEIVDYIGDIVKKGFAYASNGSVYFDVGAFRRAEDHVYCKLCPEAIGNAELLAEGEGALTQEFGSEKRAPNDFALWKRSKEGEPSWESPWGPGRPGWHIECSVMASQVFRQMGVKGGCMDIHSGGIDLKFPHHDNEMAQAEAQSGEKQWVNYFVHSGHLSIKERKMSKSLKNFITIRQALQNNTARQIRMLFLLHKYNAPMDYSDDTMAHATVLEKSFSNFFQNVKVALRSSTIQMSQKWTEHEQDLHNDIDTARYAVRKALLDDFDTATAMTALQDLVKAVNKYLETQGP-AKAIVSLVVRKAAVYVTEMFRVFGLISAGTDIGFPLEEG-----------------EGAGAVSREDVLAPVLDAVLEFRAGARDAARTGDAKGVLTKCDAFRDAVLPELGVRLEDKTEGSVWKLADPEELRREAEQ 564          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI)

HSP 1 Score: 585 bits (1508), Expect = 7.630e-202
Identity = 296/542 (54.61%), Postives = 375/542 (69.19%), Query Frame = 1
Query:    1 QTRFVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAGDKQSPGDFALWKKSR---EG--EPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQV----VWKLEDPAVLARERQQRE 1599
            + RF+P+DPSRVLWY CGPTVY  SHMGHAR+Y+  DI+RRI  DF GY + +  NITD+DDKII R++ER + FRELAA  EA++ +DM  LGV+ PD++TRVSE+IPEV+ +++ ++  GYAY SNGSVYFN   F+   GH Y KL+PE +GN EL+AEGEGAL+    DKQ+P DF LWKK++   +G  EPSW+SPWG GRPGWHIECSVM+    E +G G +DVHAGG DLKFPHH+NEIAQ+E   D  QW+NY+LHTGHL+IKGFKMSKSLKNFITI+ AL EHS RQIR  FLLHKYN PMDYGD  M+ A+  EK F+EFFHN+KA LRR        + + ++ LM     TK  VR  LCDDFDTP AV  L++L++ VNKY+E    +G  +++   R    Y+T + + FGL      +GFS                     E AG++E +L P LD L++FR+  R+    GD A VLAA D +RDD+LP +GVR+EDKG  V    VWKL+DPA L  ER+Q+E
Sbjct:   28 KVRFIPRDPSRVLWYQCGPTVYAESHMGHARSYVCLDIIRRIAQDFLGYNIVLCQNITDIDDKIIIRSSERNIPFRELAAVNEAEFFEDMNRLGVQLPDMITRVSEYIPEVIEFVEALIAKGYAYASNGSVYFNTGTFE-SGGHKYGKLVPEQIGNSELLAEGEGALTAND-DKQNPTDFVLWKKTKTHADGMFEPSWESPWGNGRPGWHIECSVMSKCAMEKLGGGHIDVHAGGVDLKFPHHENEIAQSEGCLDSHQWINYWLHTGHLNIKGFKMSKSLKNFITIRQALEEHSARQIRFCFLLHKYNAPMDYGDGTMTQAVNMEKIFSEFFHNVKATLRRVGVAGPQHVGQRDVALMQFQEATKENVRAALCDDFDTPTAVGHLKDLIREVNKYIE-SGVVGSAVLSSTAR----YITSVLRTFGLVQDDNDIGFSLESSGG---------------ESAGNKEELLAPYLDALTKFRETVRIAAINGDTAAVLAAADCLRDDVLPPLGVRMEDKGSGVDVVSVWKLDDPATLRLEREQKE 547          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A7S3L6K9_9STRA (Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6K9_9STRA)

HSP 1 Score: 580 bits (1494), Expect = 1.900e-199
Identity = 298/537 (55.49%), Postives = 373/537 (69.46%), Query Frame = 1
Query:   10 FVPKDPSRVL-WYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLG-AGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAM-GDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALR-RSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGS----REAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQVVWKLEDPAVLARERQQR 1596
            F+  D S  L WYMCGPTVY  SH+GHARTYL FDI+RRI+ D+FGY+  ++MNITD+DDKII R+NER ++  EL+ H+E +Y +DM +LGV+ P VVTRV+E++P++  YIQ IV+ GYAYESNGSVYF+V AF+  +G  Y KL PE + N  L+AEGEG L+   A +K+SP DFALWKKS+EGEPSW+SPWG GRPGWHIECSVMAS     + G  TMD+H+GG DLKFPHHDNE+AQAEA+    QWVNYF+H GHLHI+G KMSKSLKNFITI+ AL  +S RQIR+LFLLHKYN PMDYGD+ +S A+ AEK+FNEFFHN+KAALR +   +   R     +TL   L D + +V   L DDFDTP A+  L +LVKA N YLE ++     +V   VR    Y+TK+FK+FGL     S+GF                      ED  S    +E +L PVLD+L  FR   R   RAGD   +L  CD  RD++LP +GVRLEDKG+  VWKL++PA L RE +Q+
Sbjct:   43 FITSDGSNKLTWYMCGPTVYAESHLGHARTYLGFDIIRRILEDYFGYQCELIMNITDIDDKIIERSNERNMHHLELSKHYEMEYHKDMQALGVQPPTVVTRVTEYMPDITAYIQTIVERGYAYESNGSVYFHVTAFEQAEGMHYCKLAPEQIHNASLLAEGEGKLTQSHATEKKSPRDFALWKKSKEGEPSWESPWGPGRPGWHIECSVMASDVLRKLTGHPTMDIHSGGVDLKFPHHDNEMAQAEAECGHPQWVNYFVHAGHLHIQGLKMSKSLKNFITIQQALEMNSARQIRMLFLLHKYNAPMDYGDNTLSRAVVAEKSFNEFFHNVKAALRSKDMMEQDQRWTPAAVTLQQTLTDVQAKVGAALRDDFDTPTAMTKLGDLVKATNVYLETETT---QVVGLVVRSVASYITKMFKVFGLIPND-SIGFGL--------------------EDGSSGGEGKEEILSPVLDVLMAFRSSVREQARAGDTQAILKLCDKFRDELLPPLGVRLEDKGEVSVWKLDNPADLVREMEQK 555          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A6U0T1A9_9STRA (Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0T1A9_9STRA)

HSP 1 Score: 571 bits (1471), Expect = 7.720e-196
Identity = 309/548 (56.39%), Postives = 364/548 (66.42%), Query Frame = 1
Query:    7 RFVPKDPSR-VLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLG-AGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTF---------EAMGDGT-MDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLT--SAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDK-GDQVVWKLEDPAVLARERQQREQE 1605
            RFV  D SR V WYMCGPTVY  SHMGHARTYL FDI+RRI++  FGY+V +VMN+TD+DDKII RANE+ +    L+  FEA++ +DMA+LGVR PDV+TRV+E+I ++VTYI+ IVD   AYESNGSVYF+V  F    G +Y KL PE + N EL+AEGEG L+   A DK SP DFALWKKS+ GEPSW SPWG GRPGWHIECSVMAS  F         E  G+   MD+H+GG DLKFPHHDNE+AQAEA   C QWVNYF+H GHLHIKGFKMSKSLKNFITI+DAL  ++ RQIRL FLLHKYN PMDYGD+ MS +L  EK F EFFHN+KA LR     +  R  E    L   L+D K  V   L DDFDTP ++ AL +LVKA N YL+         V   +R A  Y+T IF+IFGL   SAG  +GF                       DA   E  L PVLD L +FR   R   R  D  GVL+ CD  RDD+LP +G+RLEDK G + VWKL DP  L +ER+QRE E
Sbjct:   39 RFVTIDGSRSVKWYMCGPTVYAPSHMGHARTYLGFDIIRRILSSHFGYDVTLVMNVTDIDDKIIQRANEQNIECDTLSKQFEAEFHEDMANLGVRPPDVLTRVTEYIDDIVTYIKTIVDKKMAYESNGSVYFDVNEFSNADGMSYCKLEPEQINNAELLAEGEGKLTQDFATDKHSPRDFALWKKSKPGEPSWDSPWGPGRPGWHIECSVMASDIFSQLSGLPSAEDCGNACRMDIHSGGVDLKFPHHDNEMAQAEAHSGCNQWVNYFVHAGHLHIKGFKMSKSLKNFITIRDALENNTARQIRLCFLLHKYNAPMDYGDNTMSHSLVTEKLFVEFFHNVKAVLREGNIINIQRWDESARQLQNTLSDIKSRVDAALRDDFDTPASINALSDLVKATNLYLDSCVARQITPVNLLLRNAAVYITHIFRIFGLIPDSAGGEIGFPIGGAG-----------------DAADLEEALTPVLDSLMQFRASVRDFARVKDTGGVLSECDKFRDDVLPVLGIRLEDKTGGKSVWKLADPNELMKEREQRELE 569          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A7S1CFU2_9STRA (Cysteine--tRNA ligase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFU2_9STRA)

HSP 1 Score: 553 bits (1425), Expect = 1.430e-188
Identity = 276/536 (51.49%), Postives = 358/536 (66.79%), Query Frame = 1
Query:   10 FVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGAL---SLGAGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRML-----EPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLED--KGDQVVWKLEDPAVLARER 1587
            F+P    RVLWYMCGPTVYD++H+GHARTYL FDI+RR+M DFFG++V + MNITD+DDKII R+NERG++F EL+  +E ++++DMA+LG+   DV+TR+SEF+PE + YIQ I+DNG+AY SNGSVYF+  A+   K H Y KL+PE VG+   + EGEG L   S G  DK++P DFALWKKSREGEP W+SPWG GRPGWHIECS M+++ F  M DG +D+H+GG+DL+FPHHDNEIAQAEA +D  QW+NY++H+GHLHI+G KMSKS KNF TI++ L ++S RQ+R  FL HKYN PMDY   G++ A+  EK F++FF N+KA +R +    + +         E  L   + DT+  VR  L DDFDTP A++ LQ LV A NKY+  K +  E  V   +  AG+ VT+IF++FGL      +GF                           RE  L PVLD ++ FRDK R   RAGD A +LAACD VRD  L   GV+LED  +G    WKL     L  E+
Sbjct:   71 FIPMKGKRVLWYMCGPTVYDSAHLGHARTYLSFDIIRRVMVDFFGFDVVLAMNITDIDDKIIMRSNERGISFAELSRFYETEFLEDMAALGILPVDVMTRISEFVPETLAYIQRIMDNGFAYASNGSVYFDTVAYQESK-HDYGKLVPENVGDAGAVDEGEGKLEVESRGRSDKRNPCDFALWKKSREGEPWWESPWGNGRPGWHIECSAMSTAVFNDMADGHVDIHSGGWDLRFPHHDNEIAQAEAHFDFQQWINYWVHSGHLHIEGKKMSKSEKNFFTIREVLDDYSARQLRFFFLRHKYNAPMDYSKAGLAQAVALEKRFSDFFDNVKAKIRTNAVAGAAKWHAADGDHSEHVLANAIVDTRAAVREALADDFDTPAALLHLQRLVTATNKYIAAKEEKDETPVPYLLIQAGDTVTRIFRVFGLVFD-YPIGFGDEGGA------------------GAGREETLAPVLDAVTSFRDKVRAAARAGDTAALLAACDEVRDVSLRAAGVQLEDGKEGKPSTWKLRSAEELESEK 586          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: B7FUX6_PHATC (Cysteine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUX6_PHATC)

HSP 1 Score: 548 bits (1411), Expect = 6.330e-187
Identity = 293/529 (55.39%), Postives = 350/529 (66.16%), Query Frame = 1
Query:   28 SRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLG-AGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAM-GDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAG-SREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDMLPTVGVRLEDKGDQVVWKLEDPAVLARERQQREQE 1605
            SR++WYMCGPTVY  SHMGHARTYL FDI+RRI+   FGY V +VMN+TD+DDKII RA E+ V   +LA  +EA++ QDMA LGV  P  +TRV+E++ EV  YI +I+  G+AYESNGSVYF+VQ F       Y KL PE VGN EL+AEGEG L+     DKQSP DFALWKK++ GEPSW SPWG GRPGWHIECSVMAS   + +     MD+H+GG DLKFPHHDNE+AQAEA+    QWVNYF+H GHLHIKG KMSKSLKNFITI+ AL  +S RQIR+LFLLHKYN  MDYGD+ M+ A+  EK F EFFHN+KA LR+    DS +     + L   LA  K +V   L DDFDTP A+  L +LV+A N Y+E     G+ +V   VR    YVT IF+ FGL  +   +GF+                     E  G SRE  LGPVLD L  FR   R   R+ D  GVL  CD  RD  LP +G+RLEDK D  VWKL DPA L RE +Q+E E
Sbjct:   54 SRMVWYMCGPTVYAPSHMGHARTYLGFDIIRRILERHFGYHVTLVMNVTDIDDKIIERAAEQHVGHLQLARRYEAEFHQDMADLGVAPPTTLTRVTEYMDEVTAYIANIIQRGFAYESNGSVYFDVQTFSDTPHMHYCKLAPEQVGNAELLAEGEGKLTQDFVTDKQSPRDFALWKKTKPGEPSWDSPWGPGRPGWHIECSVMASDVLDRLLQHRRMDLHSGGVDLKFPHHDNEMAQAEAECGETQWVNYFVHAGHLHIKGLKMSKSLKNFITIQQALEINSARQIRMLFLLHKYNAQMDYGDNTMTHAMETEKRFVEFFHNVKACLRQHRMDDSQKWDATTIRLQQTLAAAKTKVHDALRDDFDTPTAMSVLVDLVRATNIYVE-----GDTVVNLVVRNVASYVTDIFRTFGLVGS-EDVGFAT--------------------ESGGASREETLGPVLDALMNFRAAVRDKARSQDVGGVLDLCDAFRDLHLPNLGIRLEDKADGSVWKLADPAELLREMEQKEAE 556          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A5D6YDM0_9STRA (Cysteine--tRNA ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDM0_9STRA)

HSP 1 Score: 548 bits (1411), Expect = 2.920e-186
Identity = 289/587 (49.23%), Postives = 364/587 (62.01%), Query Frame = 1
Query:    1 QTRFVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGV------------------------------------NFRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSL----GAGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGD----------AAGVLAACDYVRDDMLPTVGVRLEDKG-DQVVWKLEDPAVLARERQQREQEK 1608
            +T FVP    RVLWYMCGPTVYD +H+GH RTY  FD +RRI+ D+FG+EV +VMNITD+DDKII RA E G                                       + L++ +E  ++ DMASLG++ P V+TRVSE++PE+V Y++ I+ NGYAYESNGSVYF+  AF   KG AY KLLPE VG  EL+AEGEG+LS     G  DK+S  DFALWK S+ GEPSW SPWG GRPGWHIECS MAS   +    G +DVH+GG DL+FPHHDNEIAQAEA +D  QWVNYFLHTGHLHI+G KMSKSLKNF+ I++AL ++S+RQ+R LFLLHKYN PMDY D+ M  A+G ++ F+EFF N+KAALR      + +    E  L A L + K  V + L DD +TP A++ LQ+L K VN+Y+    +L    V+  +R A EY+T I ++FGL  A   +GF                           +EAVL PVLDI ++FRD+ R   RAG           A  +LA CD VRD+ LP  GVRLED+     VWKL +   L  E Q++  EK
Sbjct:   45 KTPFVPMHGRRVLWYMCGPTVYDQTHLGHGRTYTCFDYVRRILEDYFGFEVELVMNITDIDDKIIIRAAENGWLEAHAGQESELPADKDARTRTVMAWAATQPAEETMRRTKALSSFWEQSFLADMASLGIKMPAVITRVSEYVPEIVEYVERIIRNGYAYESNGSVYFDTVAFAQSKGKAYGKLLPENVGQSELLAEGEGSLSAAAATGKSDKRSASDFALWKTSKPGEPSWASPWGAGRPGWHIECSAMASDVLKHHAGGQIDVHSGGIDLRFPHHDNEIAQAEAYFDFPQWVNYFLHTGHLHIEGLKMSKSLKNFVKIQEALRDNSSRQLRFLFLLHKYNVPMDYNDNSMDEAVGVDRFFSEFFQNVKAALRALGADKTQKWTPREKKLSAALLEAKERVHQALADDLNTPAALLHLQQLAKEVNRYMASAGEL----VSMIIRSAAEYITHILRVFGLVPAASDIGFPLTADGGAA---------------GADQEAVLAPVLDIFAQFRDEIREAARAGGSGDXXXXGALARTILALCDQVRDEKLPLAGVRLEDRAAGSAVWKLANKDELIEELQKKADEK 612          
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Match: A0A6G0XIC0_9STRA (Cysteine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIC0_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 8.160e-186
Identity = 284/576 (49.31%), Postives = 363/576 (63.02%), Query Frame = 1
Query:    1 QTRFVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYEVNMVMNITDVDDKIITRANERGVN----------------------------------FRELAAHFEADYMQDMASLGVRAPDVVTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLLPEGVGNGELMAEGEGALSLGAGDKQSPGDFALWKKSREGEPSWKSPWGEGRPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYDCGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLHKYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPELTLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEPIVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSXXXXXXXXXXXXXXXXXXXXXEDAGSREAVLGPVLDILSEFRDKARVCGRAGDA-----AGVLAACDYVRDDMLPTVGVRLEDK-GDQVVWKLEDPAVLARERQQREQEK 1608
            +T FVP    R+LWYMCGPTVYD +H+GH RTY  FD +RRI+ D+FGYEV +VMNITD+DDKII RA E G N                                    +L+ +FE  +M DMA+L ++ P V+TRVSE++PE+V +++ I+ NGYAYESNGSVYF+  AF   KG  Y KL+PE VG  EL+AEGEG+LS+GA DK++  DFALWKKS++GEP W SPWGEGRPGWHIECS MAS   + +  G +D+H GG DL+FPHHDNEIAQ+EA +D  QW+NYF+HTGHL+IKG KMSKSLKNF+ I +AL  ++ RQ+R LFLLHKYN PMDY D+ M  A+G +  FN+FF N+K  LR +  ++S +  E E  L   + DTK +V + L DD DTP A+  LQEL K VN+Y+          V+  VR A EY+T++ ++FGL      +GF                      E  GS+E+ L PVLDI +EFRD+ R      D        ++A CD VRD  LP  GVRLED+ G   VWKL D   L RE + +E EK
Sbjct:   40 KTTFVPMQNKRILWYMCGPTVYDITHLGHGRTYTCFDYVRRILEDYFGYEVELVMNITDIDDKIIVRAAENGWNEAHPGQSLPADKDAAAKTVLQWASEQSAESNMKRTADLSKYFEKTFMDDMAALNIKPPTVLTRVSEYVPEIVEFVEGIIKNGYAYESNGSVYFDTVAFGKSKGKNYGKLVPENVGQSELLAEGEGSLSVGASDKRNANDFALWKKSKQGEPFWSSPWGEGRPGWHIECSAMASDALKHLEGGRIDIHTGGVDLRFPHHDNEIAQSEAYFDFEQWINYFIHTGHLNIKGLKMSKSLKNFVKINEALKLNTPRQLRFLFLLHKYNVPMDYDDNTMDEAVGVDAFFNKFFQNVKVLLRETGIENSQKWGEAEKALGKSVLDTKEKVHQALADDLDTPLALRLLQELAKDVNRYMASSPSP----VSMAVRSAAEYITRMLRVFGLIQNSSEIGFPL--------------------EVGGSQESTLAPVLDIFTEFRDQVRSILFDKDPNVDVKKALMALCDSVRDTKLPHAGVRLEDRAGAGSVWKLADKDELLREIEAKEAEK 591          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3861.10096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK68_9PHAE0.000e+081.38Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835Z463_9STRA2.970e-25766.73Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S1FUV2_9STRA3.000e-20558.44Cysteine--tRNA ligase n=2 Tax=Corethron hystrix Ta... [more]
A0A812UK10_SYMMI7.630e-20254.61Cysteine--tRNA ligase n=1 Tax=Symbiodinium microad... [more]
A0A7S3L6K9_9STRA1.900e-19955.49Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis... [more]
A0A6U0T1A9_9STRA7.720e-19656.39Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica ... [more]
A0A7S1CFU2_9STRA1.430e-18851.49Cysteine--tRNA ligase n=1 Tax=Bicosoecida sp. CB-2... [more]
B7FUX6_PHATC6.330e-18755.39Cysteine--tRNA ligase n=2 Tax=Phaeodactylum tricor... [more]
A0A5D6YDM0_9STRA2.920e-18649.23Cysteine--tRNA ligase n=1 Tax=Pythium brassicum Ta... [more]
A0A6G0XIC0_9STRA8.160e-18649.31Cysteine--tRNA ligase n=1 Tax=Aphanomyces euteiche... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3861contigH-paniculata_contig3861:2609..16473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score552.7
Seed ortholog evalue1.8e-154
Seed eggNOG ortholog42099.EPrPV00000014303
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Cysteinyl-tRNA synthetase. Source PGD
EggNOG OGs1MB85@121069,COG0215@1,KOG2007@2759
Ec32 ortholog descriptionCysteinyl-tRNA Synthetase
Ec32 orthologEc-02_002270.1
EC6.1.1.16
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons13
Model size1611
Cds size1611
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930185.87616-CDS-H-paniculata_contig3861:2608..26961622930185.87616-CDS-H-paniculata_contig3861:2608..2696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 2609..2696 +
1691481182.6403754-CDS-H-paniculata_contig3861:2608..26961691481182.6403754-CDS-H-paniculata_contig3861:2608..2696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 2609..2696 +
1622930185.8911903-CDS-H-paniculata_contig3861:3311..34331622930185.8911903-CDS-H-paniculata_contig3861:3311..3433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 3312..3433 +
1691481182.6532485-CDS-H-paniculata_contig3861:3311..34331691481182.6532485-CDS-H-paniculata_contig3861:3311..3433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 3312..3433 +
1622930185.9061198-CDS-H-paniculata_contig3861:4451..45711622930185.9061198-CDS-H-paniculata_contig3861:4451..4571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 4452..4571 +
1691481182.663132-CDS-H-paniculata_contig3861:4451..45711691481182.663132-CDS-H-paniculata_contig3861:4451..4571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 4452..4571 +
1622930185.9197235-CDS-H-paniculata_contig3861:5644..57221622930185.9197235-CDS-H-paniculata_contig3861:5644..5722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 5645..5722 +
1691481182.6795185-CDS-H-paniculata_contig3861:5644..57221691481182.6795185-CDS-H-paniculata_contig3861:5644..5722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 5645..5722 +
1622930185.9332905-CDS-H-paniculata_contig3861:6371..66281622930185.9332905-CDS-H-paniculata_contig3861:6371..6628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 6372..6628 +
1691481182.6910498-CDS-H-paniculata_contig3861:6371..66281691481182.6910498-CDS-H-paniculata_contig3861:6371..6628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 6372..6628 +
1622930185.9516294-CDS-H-paniculata_contig3861:7635..77021622930185.9516294-CDS-H-paniculata_contig3861:7635..7702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 7636..7702 +
1691481182.7058473-CDS-H-paniculata_contig3861:7635..77021691481182.7058473-CDS-H-paniculata_contig3861:7635..7702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 7636..7702 +
1622930185.97213-CDS-H-paniculata_contig3861:8694..88381622930185.97213-CDS-H-paniculata_contig3861:8694..8838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 8695..8838 +
1691481182.7173052-CDS-H-paniculata_contig3861:8694..88381691481182.7173052-CDS-H-paniculata_contig3861:8694..8838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 8695..8838 +
1622930185.9897544-CDS-H-paniculata_contig3861:10049..101931622930185.9897544-CDS-H-paniculata_contig3861:10049..10193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 10050..10193 +
1691481182.7345734-CDS-H-paniculata_contig3861:10049..101931691481182.7345734-CDS-H-paniculata_contig3861:10049..10193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 10050..10193 +
1622930186.0055556-CDS-H-paniculata_contig3861:10955..111021622930186.0055556-CDS-H-paniculata_contig3861:10955..11102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 10956..11102 +
1691481182.7478218-CDS-H-paniculata_contig3861:10955..111021691481182.7478218-CDS-H-paniculata_contig3861:10955..11102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 10956..11102 +
1622930186.0252206-CDS-H-paniculata_contig3861:12039..121261622930186.0252206-CDS-H-paniculata_contig3861:12039..12126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 12040..12126 +
1691481182.7560353-CDS-H-paniculata_contig3861:12039..121261691481182.7560353-CDS-H-paniculata_contig3861:12039..12126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 12040..12126 +
1622930186.042668-CDS-H-paniculata_contig3861:12536..126511622930186.042668-CDS-H-paniculata_contig3861:12536..12651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 12537..12651 +
1691481182.7638786-CDS-H-paniculata_contig3861:12536..126511691481182.7638786-CDS-H-paniculata_contig3861:12536..12651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 12537..12651 +
1622930186.0649662-CDS-H-paniculata_contig3861:15288..154611622930186.0649662-CDS-H-paniculata_contig3861:15288..15461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 15289..15461 +
1691481182.7716985-CDS-H-paniculata_contig3861:15288..154611691481182.7716985-CDS-H-paniculata_contig3861:15288..15461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 15289..15461 +
1622930186.085276-CDS-H-paniculata_contig3861:16404..164731622930186.085276-CDS-H-paniculata_contig3861:16404..16473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 16405..16473 +
1691481182.7796934-CDS-H-paniculata_contig3861:16404..164731691481182.7796934-CDS-H-paniculata_contig3861:16404..16473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3861 16405..16473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3861.10096.1prot_H-paniculata_contig3861.10096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3861 2609..16473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3861.10096.1

>prot_H-paniculata_contig3861.10096.1 ID=prot_H-paniculata_contig3861.10096.1|Name=mRNA_H-paniculata_contig3861.10096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=537bp
QTRFVPKDPSRVLWYMCGPTVYDASHMGHARTYLHFDILRRIMTDFFGYE
VNMVMNITDVDDKIITRANERGVNFRELAAHFEADYMQDMASLGVRAPDV
VTRVSEFIPEVVTYIQDIVDNGYAYESNGSVYFNVQAFDGKKGHAYAKLL
PEGVGNGELMAEGEGALSLGAGDKQSPGDFALWKKSREGEPSWKSPWGEG
RPGWHIECSVMASSTFEAMGDGTMDVHAGGFDLKFPHHDNEIAQAEAKYD
CGQWVNYFLHTGHLHIKGFKMSKSLKNFITIKDALTEHSTRQIRLLFLLH
KYNTPMDYGDDGMSGALGAEKTFNEFFHNIKAALRRSTTKDSLRMLEPEL
TLMARLADTKVEVRRCLCDDFDTPGAVVALQELVKAVNKYLEMKSKLGEP
IVAGCVRGAGEYVTKIFKIFGLTSAGVSLGFSTAAAVGAAVGAGGEANGM
ANGEDAGSREAVLGPVLDILSEFRDKARVCGRAGDAAGVLAACDYVRDDM
LPTVGVRLEDKGDQVVWKLEDPAVLARERQQREQEKV
back to top

mRNA from alignment at H-paniculata_contig3861:2609..16473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3861.10096.1 ID=mRNA_H-paniculata_contig3861.10096.1|Name=mRNA_H-paniculata_contig3861.10096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13865bp|location=Sequence derived from alignment at H-paniculata_contig3861:2609..16473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAGATTTGTTCCGAAGGACCCCAGCAGGGTGCTCTGGTACATGTG CGGGCCGACTGTGTATGACGCCAGTCACATGGGTCACGGTGAGCAGATGG GAAGGGAGAAAGAGGGGATGAAAACGCAAGGCTTTCTGTCCCATGACCGG TATTACAAATGACGGAGAGCAATACCAGATCTCGATACAGGTTGGATTTG TCACGCTTCACACGTGACCAGATCCAGAACTGGTACGGGATAGGCTCCGG TTCTGTCAGTCTTTACGCGTTATGAGAGCTAGAATCGACTTGCTATAGGA GTCTTGTTGGTTCCGTCACATTTTTCCATCTCCACATCTGATTGGTGGTC GAATTTATCATATATATATATTGTTTTTAACCCCCGGAAGGCTGAGGCAA AAACCTTTTCCGCTGCTTCCACATTCAGAATTTGTCATAATATTCAATCC TACAAAGGGCTGATCTGAACATGTGTTATTGTTTTTTTTTTCTTTTTTTT CTTTTTTTCTCAGTATTTGTTTGGGTGCTGATGTTGTGTCAACATGTGTG TACCCAATCAGCACGTACGTGATCTTTTTTTTTTTTTTTCTTCTCCCCTG ATTTTTGTAGCTTTTCAACATGATTGACTCACTTATGTGTGTGTGTGTGT GTGTTTTTTTTTATGTTCGAAATATCTGTATTATTTATAATATACCCACT CAGCGCGGACATATCTCCACTTCGACATTCTCCGAAGGATAATGACGGAC TTTTTTGGATACGAAGTGAATATGGTCATGAACATAACGGATGTGGACGA CAAGATCATCACGAGGGCTAACGAGGTACGTTATTTGGAACCCTTTCGGA GTCTATGAACGTCTTTCTTCTTTTTTTTATGATCTTCTTATCAGCTTGAA TGAGTTTTTTTGTTTTTTTTTGTATTCACGGAACACACCCGATACTTGTT TTGTCGTTCTCGTTCTATATTGAGACCGAGTCTGACCAAACTGAAATAAA GCGACAAGACGAAAAAACGTAAAAACAAGGCTGTGATTGGCAGGCTGTTG GGCCGTACGTAGTAGGTGTGGACCGAACGAAACATGAACATGTGTCTCGT GTTTCGTTTGTGCCTGCGACCCAACCACCTACACATGCTCATGATTCGGT CCTACACCTACGGCCCAACATCTTAGCCAATCACACCCTTGTTTTTATGT TTTTTCGTCTTGTGTTTTATTTCATTTGGTTTGCTCGGTATGGGTCACCC TCCTAGCAGGCGCGCGTTTTTTGGCGGAGAAACATAAATCTGTCAATTAT TAGATTTGCGGGCGTCCACACAAGAGGAGAAAACTGATCGAGGAAAAAAA AAAAAAAAAGCGAAATATTTTTGGTATTTGTGGAAACACTTCACGAAAAC AATGGTTGGCAGTGTAATCAGGTAAAAATATCGGCTCTTGATTGAAAGGT TGGAAAAAGCAGGCTTGATTTTACAATTATTTAGGGCACAAGTCTCACAG CAACAACAACAACAACAACAGGTAATGGCCAGAAAAGGTGAAATGCGCCC CGTCTTCGTGTCAAAGTTTTATATCTTGACCCTTGACGCTGAAAACAGCA CTGTGGAGTTCAATGGCTTATGCAACGCGCTGCACGAGCCAGACGTACGT GAAGTTGTGCGGCGTTTTTTTTTTTTTCAAGTGTTCTTTTTACTATTTTT TTTTTGTAATTAATCCATTTTGTCACTTGGTTTTCTTTTTTACGTCAACC TGTCGTCGTTGTCGTTGCTGCTGCTGCTGCCCTTTTCATTTCACGTGGCG GGGTGGGGTGGGGTGGTAATTGGCGTGGGGATGAACCGAACAGCGGGGTG TTAACTTCCGTGAGCTGGCGGCGCATTTCGAGGCGGACTATATGCAGGAC ATGGCGTCCCTGGGGGTGCGCGCTCCAGACGTGGTGACTCGGGTCAGCGA GTTCATCCCCGAGGTTTGTGGAAAAACACTCGCGTATCGATCGATTTTTG TGCCTTCTATCTGGCTGGAGTCTTTATGTTTGTCCAGGTCATACTCTATG TATATCCCTTCGACCTCGACCGGGTATGTGTGTCCAGTCCAATCTGTGTC CAACTGGATTTTCTTGGCTTAATTTTTTATATCTTATGCGATTATTGCTC CTGCAGGTTATTGAACACATGTGTGATGCCCGTTATGCCTGGTAGGGACG CACAGACATGGCAGAAGGCGGCCTGCCGTAAGTCGTGGCTGTCACATATA TGATGGCACGACTGACTGTGTGATTGCTGATAATTAGACATGAATGCTTC CGAGATGCAGCCCTTTGTGATTTTTTTTTTTCAACCTTTTTTTCATGTAA TGAAGGAACACACAGCTTACATCAGACCTCAGGACGCAAGACAATGGCAG AAGATGTGTTTCTTGGGCACCCAGACCTGCTTTTGGGTATTCCTTACTTG AAACCTTTTTTTCTTTTTTTTTCCTTGAAAGGAGAGGAGGAAACCTTTGC CCATCACTTACCCCGATATTCGGGTTCGTGTGTCGGTTGCCCGAAGGTCC GACTAGGTAACCTGGCGGCTGTCATGTGGGGAAGGCACCCTGAGCGTTTG CCCGCCCTTTGCTCAGGGTAGTGTGGGACTCGCACCCACTAAAACCCCCT ATGTTGTTCCCCTCCACTTGGCGCAGTACACGCGCCGCCCTGCTCAGTGA GCTCCGGCCCTAGTCTTCACTTGAAACGCTCCAGAAACTGCGTATTTTTT TAAAAACAAAATTAATTGGATGTGAATCTCGGACGATGTTTCGAGAAATA TGTTTTTTTCCTTCTTTTTTTTTCTGGTAGTCGTTTTTGAGGTAATTCCG TTTCCGTGATATTTTCGTTTGCTATTTATAGCATAACTAATGTACCTTGT TTGTGTGGGTGTGGTCTTAATTTGGGCCGCTTTTTTTTTACTATTATTAT TCCTGTATTCGATTCTGTCGTGTTTTTTCAACACTATTTATACATTCTAT TTTGTCCACGCATGTATCTGCTCGTTGTGCCTGCAGGTGGTGACGTACAT CCAGGATATTGTTGACAACGGCTACGCTTATGAATCCAACGGATCCGTGT ACTTCAACGTGCAGGTCAGAGATGAGAACTTCCGGAGTACACACAGTACA CGACATGAATTGAGAGGAATTGCTATTGTTGTTTAGCGTGGGCCTCGCTG CTCATGCTCAGCCTACCGGAAATGAGAGGTTTGAATGTTTTGTTACGTAG GGATGGCCACAGAGACAGTATCCGGATGCTGCAAGCATTACATCGAACAC CCTAGATCACCGGCGTTTGGTCGGTTTTGTGTTGAGGTGAGGATTTCTTT ATCTTTTTAGGTTTACATCGGTGAGACAGGCGTGTACAAGGTTTTACTAG TTGATTCGATCGCTATGTTGGCTCATGTGAGTCCTTGCAGTCGTTCGACG TCGATAAGAAGCTTGACGTTGTTGCCATTCCATCACAGGTTCTCTTTATA ATTCACAAATTTACACCATTCGTTCATTTATTCCAAATCCAGACTCACGT ACGTCCTTGCAGGCGTTATTGTACACCACCAAGAAACGCCACCCATTACC ATCTCACGGCTCTCACGCCTCCGTAACTTAAAAAAAAACAAAAAAAACTA GCTCACGTACGACCAACGCCGTGTTTTCCCATCCGGTCACGCGGTCCTCC TTACAGATCGCAAGGTTATACATGCTTCACAAAGTTTTCCTAACCTTACG TACGTCCTTGCAGGCGTTCGACGGCAAGAAAGGTCACGCGTATGCCAAGT TGCTGCCAGAGGGAGTGGGAAATGGTGAGTTGATGGCGGAGGGCGAGGGC GCGCTGAGCCTGGGAGCTGGGGACAAGCAGTCACCGGGCGACTTTGCCCT CTGGAAGAAGAGCCGGGAAGGGGAGCCATCGTGGAAGAGTCCATGGGGCG AGGGGCGCCCGGGGTGGCATATCGAGTGCAGCGTGATGGCTAGCTCGACG TTCGAGGCCATGGGGGATGGGTAAGTGGGGTGGGTGGGATGGAAGGGATG GAAGAACGGGAAATTTTTGTTCTTGTTCAAGCAAGAGCGACAAGAGTACG TGATGCATTTTTTGTTTGTTGCATGTCCTGTTTTGTTCTGTGTTGATTGG ATCAGAGCGAAAGCGTATGGTGTTTTTTTTTTTTTTCTGTCGAAGCAAAA AACAATGTTTTTATTTTTTTATTTTTTTTTTATTTTTTATTTTATTTCCT CAATCAAGCATCTTAATGTTCTTTACAGTCTGTGTTGGATATTATTGCGA GATATTTTGGGGTAGGGTGGATGGGTTAGGGTGGGAATGTTTGGGGGTAT TATGTCTTAGGAGTCTGCGTTGTGGAAGTTTCGGGGAAATTAGTCGAATG AGGTCTGCACATTGTGGAAATGTTGCGAAAGTTGAAAGTTTTAGGCATCA TGTTGTCGGTCGAAAATGTGAACGTATGGGAAAGGGTTGTGGTGTTAGAG TTAACACACTCGGAGGCAGGTGTCTATCGCATTGGGGTGTGGATGCTTTT TCATTTTTAACTGCCAGTTTTCTCGAGAGCTAATGGCTTGCCAGCCACTG ACAACGAATAGTTTACCGGTGGGAAAATTTTGCAGAGGACATGCATATAT ATGTATGTTGGTTGGTTGACGTGTTCCTTCGAGCGCGTGATGTCTCCGTT GGAAAGAAAGTCGTGTTCGAAAATGCTCTTCGCGACCACGGTCTTGTACC TCCGGGTTTCAAGCCGGTCGCGAATGTGATCGTAATCGCGGTTGAGTTGT GTCGTTTTGTGTCTCATCGTCTCTTTTCGGGAGAGTGGGGAAGAAGAGAG GCACGGGCATATTGCATCTGCTATTGTTTCCCCACCGGTGGCCGGTGATG TAACGGTCTTTGATTTTTTTTTTGCTGGTGCTGTTTCTGTCGTCTTCATT CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCC CTGCTTTCTTTGTTTCCTTTCTATTAGAACTATGGACGTCCACGCTGGAG GGTTTGACCTTAAATTTCCACACCACGACAACGAGATAGCACAGGTAACT TACGTGGTTGTGACAAATAAACTTGTTCGTAGGAAACTGGATTTTTGCAC GTCTGCAAGAAACGATTTTTTTGTTTAGTTTTGTTCCAGGGAGATGAGGT TTCGTTAAGGATGCCATTATAACTAAGGAGTCTAGTCCACTGTTGTTTTT TCCCCCAGTTCTCAAGGTGTTTCAGTTTTTAGTAACGAATGGTGTTTTTG GCAAGCGCCTCTCTTTTTGCAAAAAAAATAAAAAATAATAATCTCATTGT ATAGTCTTTCGTGATTGGTTTTACTAGTAGGACGAACAGCAAGTTTACGA CGCCTGAAAAAGGCGGCGTAACCTAGCTGTGGCGGCCGGGCCTGTCTTTT GGTCTTGACCACGACGAGGTAGGCCGCTTCTGTCCCAAGGCTTTTTATTG GGTATTTCCTTCTTTCTTTTGACGCGAAAATTTGAGATCGTCCATGGACC TACGCCCAAACGGGTAGGGTAGCTGGTGAACTGAGCATGACTGGAAGTCT GGTCAGAGGTCTTTTAGTGGGTGCAACCCCCCCCACACTGCCTACTTGGT TCGGCCGAACCCGGGTGGCGCCTACGCCGCAGAGGAATAAATAACTCTGT TCTGTTAAAGGAAACGTAGACTTACTTCGGTAGAAATACTCAAGTACTGA AGCACTGGATAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTAAAAAACAAA CAAAAGAAAACTTGAGAGCGTTATACGTCTGGTAGGTTGGCACCCACATG AAATAGATGATCACAATATGGGCTATGACATAACTCCACAGCTGATTAGG GGTCCTAAGTCCTGAAGGGGTTGGTGGAACAATACCATGGTTTGTCCCCC CCCCTCCCCCTCGGTGATTCCCAGGGAATTTTCCGATTTCTGCAAAATAC GATTTTGATTGCGATTCATAAATTGTGTCGAATCGATGAAGCTTCGTTCT CATGCTTACATAGTTTTTTTGGGGGGTCTTCTGCAGGCCGAGGCGAAGTA CGATTGCGGCCAGTGGGTCAACTACTTTCTGCACACAGGCCACCTCCACA TCAAGGGCTTTAAGATGTCCAAGAGCCTCAAGAACTTCATCACCATTAAG GATGCTCTCACGGAGCACTCCACTCGACAGGTGGCCGATGCTGAAACGAA ATACAATGAGGGTAGCTTGTTGTTTTGGTTCGTGTGTTGACGTTGAGCCT ACTCTGGTGCGGCAACGACCGTTTTTTTTTTTTTCCCGCATACTCTTTTC AAGTAGAGCTCACGGATATATATCTACACGCCCGATTTCGTTATTTTCCA ACACGGGCATAAGGGCTCGCTGCTGCTCGCGAGGAGTGTAGGTGCAGACG ACCGTGAAGATTCGTTGTGTAGAATTTACTTGAGTCAAGAAGTGAAAAAT TGGTCCGGAATGATTAGCACCCTCTCGTTATCAACAGTCGTTGTAGAGTG TTGAGTGGTTTGTTAGATACTCGAGAGGATGGGATATTTTGTTGAAGAAG ATAGTGAATGAGGACGGTTTTATTTTAGGAATTCTGATTGGCGGTGGCCA GCCAAAACCAGCTACCCCTGGAAGACGGGACTCTTGTAGTGAGCAATGAC ACTATTGAGGTGAATAAGGGGCTAGAGGTTGTTGTAGAGAAGAAATCAAG GTGTACATTGAGAAGGAGAGTAAGTAGAGTGAAAAAACTATTCCCAGAAA TATTTGCATACACCTGAACATGAAATGTACAATATATAAGAAAGACGCAA CAGAAACTGGAACAAACTTCAAGTCTTGAGCCTTGCAACACAACAGGTAA TGCGAAGTGCACTTGCAACTATTACTGACTATTGCGACGTATTTAACGTG CTGTTTAATGTATGTACTATAATATTAATATTAATATTAATATATATATA TGTAATGTGTGTGTGTTCACGTGGGTTGTTCTCGTTTCGTTACAGGGAAT TTGTCATCCTTCAGTCAAGGCTCGTTTTGCTTGTTGTGTTGCTTGGGGCG GGTGGGAGTATGGTGGTCGTTGAATGTTGAAGATTCCTTCATGTACATTT TTTTTTTTTTTTTAGTGTATTTATTTTGGGAGATACAAACCTACGCCTCC TTATTGTTTTACATGGCTGAAGTATCCCAGTGTGATAATGCTCCATCATC GCTTTCGTACCTTTTCCATGTCTTATGTTCGTTCCCGTGTGTATCTGATT CCTTCTTGTACCTTTTCCGTGTGCGTGTTTGATTGTAGGTTGCAGTTTTG TCGTGTGTGTGTGTGTGTGTGTGTGTATGCCTGATTTAATTGTGTTTGAT TATTTTGCTCCTTCTTGATTCTCCCTGGTTCTGCTGCTCAGATCCGGTTG CTCTTTCTTCTCCACAAGTACAACACCCCCATGGACTACGGCGATGACGG CATGTCCGGGGCTCTGGGAGCGGAGAAAACGTTTAACGAATTCTTCCACA ACATCAAGGCAGCGTTGCGGCGGTCCACAACGAAGGTGATCGTCTCCTGT TTAGGTCCTTTGCAACTGATGAATGTATTTTGTATTTCCCTTGAGTTGAT AAGGGACATGCTGTCCGAAAAAGCTGGGAGGGTGTAATAATGCAACGGCG TTGCTATTTTGTTATTTACTAGTTAATTAATTAGACCCTCAATTAATTGA TCGGGACGCATGATCCCCAAGACTGCCATGGGTACTATCGTCAACGGTGC TGATTTTTTTTTTTCTGTATGGTGGGGTGGGGACTGCCCAAGACTTATGC CCATAAGTTTAACACTTCGCGTGTGATTTGAAAAAATACTAATATATATA TATATATAGTAGTCCGCAGACCTCGTCCGCAGTGATGTATTTATATTAAT TAAAGGGTAAAGAAATGCGGCAAAATTTGCATCCACACACACACACACAC ACACACGTATTCTTTGTCAAGTGACGAATAATACGATGACTTTCCTACTG CTGGTTGAGTCACAGCCTGCGCTAACCCGTGCAGTCCTTTACAGTTCAGT TAATTTGCGTTGTCCTCAACCCACGCAAGGAAACTCGCTGCGCTCGCAAG AAAAATCCATTATTTTCCTTCAAAATCAGAAGTTACTTGAGTACAGAGTT GGGGAAATGTTCCGAAACGACGTCAAACCGCCGCTACCACCTTGGTTCAT TAACCCATGATAGATATATTCCGAAGGAACGTCTTCCCCACTCCCTATAT TCAACACCCAAGTGCGCTGCCACACCCTCGTGTTTGCTTGTACTTAGGAC TCGCTGCGCATGCTCGAGCCAGAGCTGACTCTGATGGCAAGGCTGGCCGA TACTAAGGTGGAAGTACGGCGTTGCCTCTGCGACGACTTCGATACTCCGG GGGCCGTGGTTGCTCTGCAGGAGCTCGTTAAGGCCGTCAACAAGGTGATT GGTTCAGTTTTGTTACGGTAGAACGGTAGAATCCGGAGGTGTATTATCGC GCATCGCCGACCCCAAGGGGTACGGAGAATTGTTTTGAAGCACGACTTCT ATCTTGAGGATGGAGACGTTATATACGCGGCCGAAAGAATCTGGTAATCG AAAGACGTATTGGTCATCATCCACTGTAAGATGTTTTCAACGGTCATACT AGGACTATTCGTTGAAAAGTGAAGTTCAGCGCTGTGGTCGTGGAGATGAT CAATCGCGTTTGAAAAGATTCTTGGCGATTTGGTGCGGTATTTGCATCTG ACGGGTTTCACGGTAGCCTACTTGGTCAGTCCGTTGCAAGAGAGGCCAGC AGGAACCGCTACCCTTGCCATTGGAAGCGAAGTGTTGCACACCTTGGATG TAGGTAGATCAAGGTTGTGGTGACTCTTGGAACATAGACCATGTATGACA GCACGAGAGTACAGGGTGATTTTCAACTCGATTCAGATGAACAGGTGAAC CCATTTATTTGCATCGTGTTTTAAATGAGGCCTCGTTTTGCACGTACCTC GATGGGCTTCATCGGGTTAAGAGATCGGCGGTGATGATTCATCACGGGTT TGGCGTATTATGTAGAGGTGGTGATGTAAAGGATTTTGGTGTGAGTTACA GTAATAAATAGTGAGCGATGTGAATGATCTGTTCTGTGTTATAATCAGTA GTGATGCGAACAGTCTGTCATGCAGCAGGTAATGTGCTGCGCTGCGCTCG CCGCTCCCCGAAATGGGTTCATTAAATCAACGCTGCTGTGCACTTTGCCT CGTCTTCCTGCTTCACCGTGCCCTCCTATGCGTGTGTTGTGCCCCGTTTT TTCCGTTTGCCCCTACCTCCCCCATCATTACGACGCCAATCATGAACCGT GCATTATAAAATACACGAATAAATCATTCAGTACCTGGAAATGAAGAGCA AGCTGGGAGAGCCAATCGTGGCCGGGTGCGTTCGGGGGGCTGGAGAGTAC GTGACAAAGATTTTCAAGGTATGTAGGGCCGGGGGCGAGGGGTGTATTGA GGCGATTTGTCGGGATGTTGAGGGTGATATGGTGGACGTTGCGGTCGGTG TGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTG TGTCTGTGTCTAGGTGTGTGTCTGTGTCTGTCCAAAAGTAGATTGTTAAA ATCTTCCGTACTATTGTTTTTTCCTCTTTCGTACCCTGGCTTTTCAGAGG TTATTTCGATAATTCTCACACGCCGATCCGCGAAGGGGTGGTTCATAACA TGGAGATTCAGAAGGAGATAAAATACGTCATGTGTTGTAATGAATACCTG GTCATATGAATAGGTTGGTGCGACATTTCTGTTTCCCTTTCAAGACTATG GTGATGTTTTTTTTTTGTTTTTTTTCAGATTTTCGGGTTGACGTCAGCGG GGGTATCGCTCGGCTTTTCCACGGCGGCGGCGGTAGGGGCGGCGGTGGGG GCAGGGGGAGAGGCGAACGGGATGGCTAACGGCGAAGACGCAGGTGAATG GGGAGGCAACCATGATACTCGCGGAAAATAAATAACTAAATATATATATA TATATATATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGACCCGGGCGGTTTTGTAGTGATCTGATATACATATGCTCGTCGCTA AGAATGAACGCAATTTTGGGCCGAGCCTCGAAGTCTTCATTTCTGGCAAT GTTGAACAGGACTCAACCGTTTGCGCAAGACGGAGTTCTTTTTGCTAAAT TCCTTTTGAAAGTTTTGATTGAATGGTATATAGCCAACAGTGAGCTCCTC GTCTCGTACCCTGCTCACTCACACCAGCGTCTCGATACGATAGGAGTTCC TTTTCGAGTTCGTCTGTTTCGTGAGAGAAACGAGCAAGTACTGGCTGTGA CGAGGAGTTCGTTTGTAACGAGACGTTGGTGTAGGTGGACTGGAGTCCAG AACGAGGAGCTGAACTGTTAGCTATACTCGACCTAAACGAAATTTGGAAA AGGAGTTCGTTTTGCGCGAACGCTCTATTGTCATTATTGCATTATATAGG ATTTAGTATAGGCACTAGGACTGAGCCCCATTACCTTTGTCCTTTTTTTT TTTTTTAACAAAGCCTCGATTTTTTTATATCTCAGTATCTTGATAGCGGG CTGGATCTGTATGCCTAGTGTCACTTCGTATAATAAAAATGTATTCATGT AGTGGTGTGTCGCTGATACCAAAACACCTTGCGCCCCCTTTCGAGCGGAG AACGACAGTCTGGATGGGCTGTTTTGCCAGAGTCCTTTTCAGACGTTGCT GGTTTCTGATACGGTGCGTGTACGTTAGCGTATTTTAATGTAGGGTGTAT TTATGTATCGTTTGTCTATCTTTCTATTTGTTTCCCTCTCATCAGTAAGG ATTTTTTATTTTCCGTTATGGAAGAATGCCGTGCCTACAGCACAATCCGT CGACTGAGGAGTTTACCCCGTTGTCGCGGTCAGGTACTGACTGTTGTACT GCCATACATCGGTGGTGAGGTGGCTTCTATCCCACCAACGACTACGCCCG GTTGAAAGACTTGTGCAGTGTCACTCATACCCTTCTTTTGAAATCTCAGA ATATTTTTTTGATCTTGCTGAGGTGCTGCTCAATTTAATTGTATTGTTTT ATTCTCGAAATTAACACAGAAATGCGTAGCCGCCAAGTGGTGCTGCTTGT CTTGTACATTGTTTTATACTTGACATAAGTATCGAAAAACTTGTATGCAT AGCAATCAACGCGATCTTTGATGAGGCAGTTCTCATTGCCAACTGCAAGG AATTGTGCGTGGTTTGTTGTGCTGTATTCGCGGTGACCAGTACTAGTGCA TACGCAGTGGCGGTTTTGGTTGAACGGAAAAAATAGCGAGCCATAGACAG AAATATCTTCAAAATACACGATTCGTAACGTACATGACCAATATAAGTCG AATCCAAAATCGATACTGCACGTGCACTAGGTGACAGCTATTAATATGTA TTTTGAACATTGGCATTAGTTAGTTGGACCTCAGAGCTAAGATATGCTCG ATATAAGATCTCATGCTTGAATAAGTGATTCGTAATTTCGGGCTATGACG TAAAAACAACATATATAATAGGGGATATTCCATTTTGGTCGTTGGGACCG GTTTTAGGCCATCGAACACCCCATATCGCTTCCCTTAACTGTAGAAAGAC CCGGGAAAATCCTCGGGGGGACGCAAACGGTGCAGCCTCTCCCCTCCCCC TCACGCCCCCCGTCTCTCTGCATTTCTTTTTCTTCACCCATGAAGGATCA TGCAGATCACATAGATGGAACAGAACCTACCCCACCCCCTTCTGTGCATT TTAGTAGCTGTAAGGCTCGGCAATAAGTGGATATGAGCACCCGTCGATAA ACTACGGCACCAGGCCAAGTGAAAGAATGTAGACAAGCTAGCGCTCAAAC TGGTCAAAACGAGAACTGGTAGAAGCTCTTTGAAGCATGAAGCTACGCGG AAATTGAAAAGCGCCGTGGAGAGAGATGGGTTGGTGTTATCCGAGGTGCT GCGGCACCGCTTGCCACCGGAACGGTTTTTCTCGCTGGTGATGTGTTATT GCCCACAAGGCCCGAGGGAGTCACCCAGACGGTATTACGTGGAAGCTTAG ATGGTGCACGGTGCTCACCGATCCCTCTTGTGTGTTGCGCAGTGTTGTGC GTACCAGCTTGCCTCCTTTCCTTTCCACCCCAGAGTGTACACCCTCTGTA TGCACCACTCGGAAGCGTTGTGAGGGAAGGAGCTTAAGCCTACCAGCTTG CCTCATTTCAATTCAATCGGTTGTTGGAGGTTTCTTGCGTGTTCCTTTTT GATCAGCTCATTTCAACCATTCGGTTAGGTCTGAAAACAAACAAACAAAA AATCTCTGGAACAGGTTTTTAACCATGGACTATCTATCCCCATCTCCCCC TACCAGTAGCAGCCGGTGAGAAAATTTTCGGGTTCAATGGCCTACCCTTT CCTATACCCTCTCGATTGTTGAATATATATAGCATACTCTAGTGTATGAC GAATACGTTTATTTTACGTGCCACCTTCCTCTGATAAACGACCGAACCGA ACCGAACTGAACTGAATTTGAATCTGACAGGGTCCCGAGAAGCGGTCCTG GGACCTGTCCTGGACATTCTCTCGGAGTTCCGAGACAAGGCGAGGGTGTG CGGGCGGGCAGGCGACGCGGCAGGTGTACTTGCGGCGTGCGATTACGTGA GAGATGACATGTTGCCCACGGTGGGGGTGAGGCTGGAGGACAAGGGGGAC CAGGTGAGCGCACCTTCTTTCACGACCTAGCCTAGAGTCAAGGATGTGAA GGAGAAAGTTAAAGGTTTTGAGATCAGCCTCTGGGCGCCGTTACGGGCCT TCACAGAGTTGTCTTCACTTGTCCCCCCTCCTTCACTGAATAAATAGGGA AAGCAGCGCCTGTATTGTGTTGACGGGGATAGGAAGCCGCCGCTGTTCAG ACAGACAGGCAGTCAGTCAGTCAGTCCAGCACACGGTAGTAGGTAGCTGC ACAGATCGGGAGCTTCGCGTGGGTTTCTCGTGGATACGGCAAGTGGATGC AGCGTGGTCGATGTTTGTCCTCAAACTCGTCTTGTTTTGGTTTATATCCT GAGATTGTGTCTTTGAAAGGCGGCCAAAGGGGTGGCATTAGGATCAGGAG GATCAGGATTGGTATCATGATGAGGATTAGGATTTACGATGCATTCCGAG GCAGATTCTATCATATATATTATAAAGTTCGTTTCTTTTTGTCAAAGGGT GATTGATTGATTGATTGGTCTAGTGTAGCCTCCATCGGTTGGACACCGAA TTACTGTTCTCACTGAGGATAGGTGCCATTCGTGTCGAATAGAGGGTGCT GTTTGAGGAGACTGCTGTGCAGCATGTCTATCGCCGTACGCGCACAGCCT TGGCAATGACGAGTAAATAGTACAAGAGTACAGACAGCATCAACCTTCAA CCATATCATCATCGCGTTTTCTGCTGGTTTCCTTGTTCCTACTCACTATC CACTTTTTCTTTCAGGTGGGTGTTACCTCTGTTGCTTGTGACGATTCATG CAGCTTCACTGCTGTTGCCGGTTTTTTTTTTTGTTCTCGTTTCTTCTGCC CTCACGCGTGGTCGACAGTCTATCAACTATGGCATGGAAGATATGAGTAT GCCTCTCTTACCCCCCCGCCCCCCCCCTGTCGATATGGTTTACAAGGTGG TATGGAAGCTGGAAGACCCAGCGGTGCTCGCGAGGGAACGTCAGCAGAGG GAGCAAGAGAAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3861:2609..16473+

>mRNA_H-paniculata_contig3861.10096.1 ID=mRNA_H-paniculata_contig3861.10096.1|Name=mRNA_H-paniculata_contig3861.10096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3222bp|location=Sequence derived from alignment at H-paniculata_contig3861:2609..16473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAGATTTGTTCCGAAGGACCCCAGCAGGGTGCTCTGGTACATGTG
CGGGCCGACTGTGTATGACGCCAGTCACATGGGTCACGCAGACAAGATTT
GTTCCGAAGGACCCCAGCAGGGTGCTCTGGTACATGTGCGGGCCGACTGT
GTATGACGCCAGTCACATGGGTCACGCGCGGACATATCTCCACTTCGACA
TTCTCCGAAGGATAATGACGGACTTTTTTGGATACGAAGTGAATATGGTC
ATGAACATAACGGATGTGGACGACAAGATCATCACGAGGGCTAACGAGCG
CGGACATATCTCCACTTCGACATTCTCCGAAGGATAATGACGGACTTTTT
TGGATACGAAGTGAATATGGTCATGAACATAACGGATGTGGACGACAAGA
TCATCACGAGGGCTAACGAGCGGGGTGTTAACTTCCGTGAGCTGGCGGCG
CATTTCGAGGCGGACTATATGCAGGACATGGCGTCCCTGGGGGTGCGCGC
TCCAGACGTGGTGACTCGGGTCAGCGAGTTCATCCCCGAGCGGGGTGTTA
ACTTCCGTGAGCTGGCGGCGCATTTCGAGGCGGACTATATGCAGGACATG
GCGTCCCTGGGGGTGCGCGCTCCAGACGTGGTGACTCGGGTCAGCGAGTT
CATCCCCGAGGTGGTGACGTACATCCAGGATATTGTTGACAACGGCTACG
CTTATGAATCCAACGGATCCGTGTACTTCAACGTGCAGGTGGTGACGTAC
ATCCAGGATATTGTTGACAACGGCTACGCTTATGAATCCAACGGATCCGT
GTACTTCAACGTGCAGGCGTTCGACGGCAAGAAAGGTCACGCGTATGCCA
AGTTGCTGCCAGAGGGAGTGGGAAATGGTGAGTTGATGGCGGAGGGCGAG
GGCGCGCTGAGCCTGGGAGCTGGGGACAAGCAGTCACCGGGCGACTTTGC
CCTCTGGAAGAAGAGCCGGGAAGGGGAGCCATCGTGGAAGAGTCCATGGG
GCGAGGGGCGCCCGGGGTGGCATATCGAGTGCAGCGTGATGGCTAGCTCG
ACGTTCGAGGCCATGGGGGATGGGCGTTCGACGGCAAGAAAGGTCACGCG
TATGCCAAGTTGCTGCCAGAGGGAGTGGGAAATGGTGAGTTGATGGCGGA
GGGCGAGGGCGCGCTGAGCCTGGGAGCTGGGGACAAGCAGTCACCGGGCG
ACTTTGCCCTCTGGAAGAAGAGCCGGGAAGGGGAGCCATCGTGGAAGAGT
CCATGGGGCGAGGGGCGCCCGGGGTGGCATATCGAGTGCAGCGTGATGGC
TAGCTCGACGTTCGAGGCCATGGGGGATGGAACTATGGACGTCCACGCTG
GAGGGTTTGACCTTAAATTTCCACACCACGACAACGAGATAGCACAGAAC
TATGGACGTCCACGCTGGAGGGTTTGACCTTAAATTTCCACACCACGACA
ACGAGATAGCACAGGCCGAGGCGAAGTACGATTGCGGCCAGTGGGTCAAC
TACTTTCTGCACACAGGCCACCTCCACATCAAGGGCTTTAAGATGTCCAA
GAGCCTCAAGAACTTCATCACCATTAAGGATGCTCTCACGGAGCACTCCA
CTCGACAGGCCGAGGCGAAGTACGATTGCGGCCAGTGGGTCAACTACTTT
CTGCACACAGGCCACCTCCACATCAAGGGCTTTAAGATGTCCAAGAGCCT
CAAGAACTTCATCACCATTAAGGATGCTCTCACGGAGCACTCCACTCGAC
AGATCCGGTTGCTCTTTCTTCTCCACAAGTACAACACCCCCATGGACTAC
GGCGATGACGGCATGTCCGGGGCTCTGGGAGCGGAGAAAACGTTTAACGA
ATTCTTCCACAACATCAAGGCAGCGTTGCGGCGGTCCACAACGAAGATCC
GGTTGCTCTTTCTTCTCCACAAGTACAACACCCCCATGGACTACGGCGAT
GACGGCATGTCCGGGGCTCTGGGAGCGGAGAAAACGTTTAACGAATTCTT
CCACAACATCAAGGCAGCGTTGCGGCGGTCCACAACGAAGGACTCGCTGC
GCATGCTCGAGCCAGAGCTGACTCTGATGGCAAGGCTGGCCGATACTAAG
GTGGAAGTACGGCGTTGCCTCTGCGACGACTTCGATACTCCGGGGGCCGT
GGTTGCTCTGCAGGAGCTCGTTAAGGCCGTCAACAAGGACTCGCTGCGCA
TGCTCGAGCCAGAGCTGACTCTGATGGCAAGGCTGGCCGATACTAAGGTG
GAAGTACGGCGTTGCCTCTGCGACGACTTCGATACTCCGGGGGCCGTGGT
TGCTCTGCAGGAGCTCGTTAAGGCCGTCAACAAGTACCTGGAAATGAAGA
GCAAGCTGGGAGAGCCAATCGTGGCCGGGTGCGTTCGGGGGGCTGGAGAG
TACGTGACAAAGATTTTCAAGTACCTGGAAATGAAGAGCAAGCTGGGAGA
GCCAATCGTGGCCGGGTGCGTTCGGGGGGCTGGAGAGTACGTGACAAAGA
TTTTCAAGATTTTCGGGTTGACGTCAGCGGGGGTATCGCTCGGCTTTTCC
ACGGCGGCGGCGGTAGGGGCGGCGGTGGGGGCAGGGGGAGAGGCGAACGG
GATGGCTAACGGCGAAGACGCAGATTTTCGGGTTGACGTCAGCGGGGGTA
TCGCTCGGCTTTTCCACGGCGGCGGCGGTAGGGGCGGCGGTGGGGGCAGG
GGGAGAGGCGAACGGGATGGCTAACGGCGAAGACGCAGGGTCCCGAGAAG
CGGTCCTGGGACCTGTCCTGGACATTCTCTCGGAGTTCCGAGACAAGGCG
AGGGTGTGCGGGCGGGCAGGCGACGCGGCAGGTGTACTTGCGGCGTGCGA
TTACGTGAGAGATGACATGTTGCCCACGGTGGGGGTGAGGCTGGAGGACA
AGGGGGACCAGGGTCCCGAGAAGCGGTCCTGGGACCTGTCCTGGACATTC
TCTCGGAGTTCCGAGACAAGGCGAGGGTGTGCGGGCGGGCAGGCGACGCG
GCAGGTGTACTTGCGGCGTGCGATTACGTGAGAGATGACATGTTGCCCAC
GGTGGGGGTGAGGCTGGAGGACAAGGGGGACCAGGTGGTATGGAAGCTGG
AAGACCCAGCGGTGCTCGCGAGGGAACGTCAGCAGAGGGAGCAAGAGAAG
GTGGTGGTATGGAAGCTGGAAGACCCAGCGGTGCTCGCGAGGGAACGTCA
GCAGAGGGAGCAAGAGAAGGTG
back to top