mRNA_H-paniculata_contig386.10094.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig386.10094.1
Unique NamemRNA_H-paniculata_contig386.10094.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig386.10094.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 5.490e-71
Identity = 154/365 (42.19%), Postives = 179/365 (49.04%), Query Frame = 2 
Query:  221 SKIMQGG------SPLTTKARQVQRRYRSLFHQGAKEYQGWCEGEADAQRALGSVCHLLDRLRMLEPGLHQDGDGTLGGLANLPGCRTLLIRKHTVELERVMRLWRALVQQMKGQVSRIEEALADAWQLHRHEAVTRARVSDLE-----------LDSARPRNAILSPDAGTRGQATMIVTATAVAGGSA-----------------------------------------------------------------------------------------------VGPAEYLQWLGDMSSMLVHEQWRKEALLSKVDFGPDDSSQRVRMHAKAHWSSRSTESLLDRALIDNALDAAQVVPLSKSR 979
            SK+  GG      SP   KARQ QRRYRSL+HQ AKEY  W +GE D+QRALGS  HL+DRL++ EP     GD  LGGL  LPGCR LLI KHT ELERVMRLWRALV+QM+GQVSR+EE LA+AWQLHR +     R                  S  P NA   P +     A + V +T+V+  +A                                                                                               VGPAEYLQWLGD+SSMLVHEQWRKE LL +V FGP+ +S R+R H +AHWSSRS  S LD+  ID A  AAQVVP  KSR
Sbjct:   20 SKVRVGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWRKGEGDSQRALGSAFHLIDRLQLFEPDQQTGGDINLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRSPGNAFTMPPSPQHASAAVGVRSTSVSHATAPKGRQQRVDHVGAKEGDVDGSTGNPQHSSREGAEVAASSQGRLGDIGNGLQAGLPATGGMKDGDRAGAVVSEIPEETTRAMATGEDRAGGVTTVVVGPAEYLQWLGDLSSMLVHEQWRKEELLLRVAFGPEAASARLRAHVQAHWSSRSAHSFLDQPSIDAATTAAQVVPPLKSR 384
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BLAST of mRNA_H-paniculata_contig386.10094.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 8.580e-51
Identity = 130/310 (41.94%), Postives = 152/310 (49.03%), Query Frame = 2 
Query:  221 SKIMQGG------SPLTTKARQVQRRYRSLFHQGAKEYQGWCEGEADAQRALGSVCHLLDRLRMLEPGLHQDGDGTLGGLANLPGCRTLLIRKHTVELERVMRLWRALVQQMKGQVSRIEEALADAWQLHRHE----------------------AVTR-------------------------------------------ARVSDLELDSARPRNAIL-------SP-----DAGTRGQATMIVT--------------------ATAVAGGS---------AVGPAEYLQWLGDMSSMLVHEQWRKE 814
            SK+  GG      SP   KARQ QRRYRSL+HQ AKEY  W EGE D+QRALGSV HLLDRL++ EP     GD  LGGL  LPGCR LLI KHT ELERVMRLWRALV+QM+GQVSR+EE LA+ WQLHR +                      A++R                                           A+  D++  +  PR++ L       SP     D G   QA +  T                    A A+A G           VGPAE+LQWLGD+SSMLVHEQWRKE
Sbjct:   20 SKVRGGGVLGRQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGENDSQRALGSVFHLLDRLQLFEPDQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLPTALSRSPGNAFTIPPSPQHAGAAVGVRSTSASHTTAPEGRLQRVHHVGAKEGDIDGSTGNPRHSSLEGAEVAASPQGRLGDIGNGLQAGLPATGGMKEGDRAGAVVSEIPGETARAMAAGGDRAGGVTTMTVGPAEHLQWLGDLSSMLVHEQWRKE 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig386.10094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYC3_9PHAE5.490e-7142.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPK5_ECTSI8.580e-5141.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig386contigH-paniculata_contig386:26589..29565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000930.1
Exons5
Model size1221
Cds size939
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930185.327785-UTR-H-paniculata_contig386:26588..266311622930185.327785-UTR-H-paniculata_contig386:26588..26631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig386 26589..26631 +
1691481182.4248817-UTR-H-paniculata_contig386:26588..266311691481182.4248817-UTR-H-paniculata_contig386:26588..26631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig386 26589..26631 +
1622930185.4487236-UTR-H-paniculata_contig386:29326..295651622930185.4487236-UTR-H-paniculata_contig386:29326..29565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig386 29327..29565 +
1691481182.4923916-UTR-H-paniculata_contig386:29326..295651691481182.4923916-UTR-H-paniculata_contig386:29326..29565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig386 29327..29565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930185.3449888-CDS-H-paniculata_contig386:26631..269011622930185.3449888-CDS-H-paniculata_contig386:26631..26901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 26632..26901 +
1691481182.4363766-CDS-H-paniculata_contig386:26631..269011691481182.4363766-CDS-H-paniculata_contig386:26631..26901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 26632..26901 +
1622930185.3587396-CDS-H-paniculata_contig386:27472..275741622930185.3587396-CDS-H-paniculata_contig386:27472..27574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 27473..27574 +
1691481182.4514544-CDS-H-paniculata_contig386:27472..275741691481182.4514544-CDS-H-paniculata_contig386:27472..27574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 27473..27574 +
1622930185.3765967-CDS-H-paniculata_contig386:28028..281601622930185.3765967-CDS-H-paniculata_contig386:28028..28160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 28029..28160 +
1691481182.4625492-CDS-H-paniculata_contig386:28028..281601691481182.4625492-CDS-H-paniculata_contig386:28028..28160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 28029..28160 +
1622930185.3897924-CDS-H-paniculata_contig386:28506..287731622930185.3897924-CDS-H-paniculata_contig386:28506..28773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 28507..28773 +
1691481182.4747317-CDS-H-paniculata_contig386:28506..287731691481182.4747317-CDS-H-paniculata_contig386:28506..28773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 28507..28773 +
1622930185.4349291-CDS-H-paniculata_contig386:29158..293261622930185.4349291-CDS-H-paniculata_contig386:29158..29326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 29159..29326 +
1691481182.4836807-CDS-H-paniculata_contig386:29158..293261691481182.4836807-CDS-H-paniculata_contig386:29158..29326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig386 29159..29326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig386.10094.1prot_H-paniculata_contig386.10094.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig386 26632..29326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig386.10094.1

>prot_H-paniculata_contig386.10094.1 ID=prot_H-paniculata_contig386.10094.1|Name=mRNA_H-paniculata_contig386.10094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MPHTASDITGLALCSSVYSTVLIGGMATPRRNDELTDGGRNADERYSNEA
PRSNSQKVQSKIMQGGSPLTTKARQVQRRYRSLFHQGAKEYQGWCEGEAD
AQRALGSVCHLLDRLRMLEPGLHQDGDGTLGGLANLPGCRTLLIRKHTVE
LERVMRLWRALVQQMKGQVSRIEEALADAWQLHRHEAVTRARVSDLELDS
ARPRNAILSPDAGTRGQATMIVTATAVAGGSAVGPAEYLQWLGDMSSMLV
HEQWRKEALLSKVDFGPDDSSQRVRMHAKAHWSSRSTESLLDRALIDNAL
DAAQVVPLSKSR*
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mRNA from alignment at H-paniculata_contig386:26589..29565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig386.10094.1 ID=mRNA_H-paniculata_contig386.10094.1|Name=mRNA_H-paniculata_contig386.10094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2977bp|location=Sequence derived from alignment at H-paniculata_contig386:26589..29565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTATTTTTGGTTCTGTGACGTGAATTTTGGTTCTGTGGCAATGCCCC
ACACTGCGTCTGACATTACGGGTCTGGCTCTGTGTAGCTCTGTGTATTCG
ACCGTGCTTATCGGTGGCATGGCAACTCCTCGTCGAAATGATGAATTAAC
AGATGGAGGAAGGAATGCGGATGAAAGATATAGCAATGAAGCGCCTCGTT
CGAATTCCCAGAAGGTTCAGAGCAAGATTATGCAAGGAGGCAGCCCGTTA
ACAACGAAAGCTCGACAAGTGCAGCGACGATATCGCTCACTCTTTCACCA
AGGAGCCAAAGAGGTGCGCAAGGCACAGAACATGCCGTATGTAATATATG
TGTGACAAATTTGAAAGGTCGATGCAATGCATGACTGCGAAGTTAGAAGG
CCAGATGTTAGCTATTGCGATGAGATTTCTGGTTGTACCAACCTTTCTTG
CACCAAGTGAGCACTCGGATATACTGGATGCTTTTAGAAGCCGCAAGTCG
CAAGCTACATGCTGTTGGGTTTCCCTGTCCACACCAATGAATGGCACTTT
GCAACACAGTACAACATGAGAGAAGATGAGATATATGTCACATGTTTAAC
CCAACCATCTGAAGTATTTCTGGATGTACGCGACATGGGATTGAGAGAAC
GAAGAGTTATAGTGACCCCGCTGTTGACAATAGAGATCATCATGGGAAAG
ACGGACGTTACCCATGTGTTCATCGCATAATTTGCCGTCGTATCCATGTC
CCCCCTTCTCTGTATCGTGTTGGGGATATAAAATATTAGGGTAGAACCTG
CCATTCTCTATACTTTACATTGTCATCCTTGAGAGTAAAACCGTGTTGCC
CTGCGTGGTTCCGTCTCTGCCAACATTGTTGCAGTACCAAGGCTGGTGTG
AAGGCGAGGCAGACGCTCAGCGAGCCTTGGGATCCGTGTGCCACCTTTTG
GATCGCCTTCGCATGTTGGAGCCGGGCCTGCATCAAGTACGATTTGTCAA
CTGCACGTGACCCCTAAACATGCGCGATGGTGCTCTGCTAGCGGTTGCAC
TGCTGTGGAACGTAAATACTAGTACCAGGTGCTCCCCATGTCCTGCCATG
CCTTTTTACGCGAATGCCCCCCATTGTACGAGTGTTGTCCTTGTCGGAGT
CTACCATTCTTTCTGGATTGCGTCATTCGGTTCCTCACCCCATGATATTT
TATGTGGAAGGTATCGTGTCTCGTTGGGTTTCGTTGATCGATGATCACCT
TCCACTCCTGGTCAATCCTAGTCTGGACCCCTGCGCGCAAACCCTCTGGT
TGACATCAGCCCTGGTGTAAGTTCGATTCCTCCCACTGCCCATAAGGAGG
AAATGTCCACTCATGCATGCTATTTGCTCACAACCAAATATTTGCCCCCT
GAAATTGGGTATCTATTGGTTGCCTCCCGCTCTCTCGAAGGATGGGGACG
GAACTCTTGGGGGACTGGCAAACCTACCGGGTTGTCGAACGCTGCTGATA
AGAAAGCACACGGTGGAGCTGGAGCGAGTGATGCGGCTCTGGCGCGCGCT
TGTTCAGCAGATGAAAGGCCAGGTACCGACCGCACGCGAAGTTTGTCACC
CAAAGGCGGGTACGATGCAACAGGCAGCGCGACTTTGAAAGCACGAGCCG
ATGCGTTCATATGATGCACATTTCTACGCACTGTGAAGGGTGCTACTCTG
CGCTACTGCGAAAACAACTAGATCTTCGTCGATAGTAAGGGTCACACTTG
ATACCGCATTGGTCTCTCTGACTAGATTACCTTCCAGTAGAGGTACACCC
GAATGAACTCCCGAGTTCCGGTGCATTTGTACATGAGACCCTCCTTCGTC
TCTCGTGCCGTTTTATTTTGTTTACCTGCCTTGTGCATGCTGACTTGGCG
TTTCCCATTGTGAAACAGGTGTCTCGCATCGAGGAGGCTCTTGCTGACGC
ATGGCAGCTACACCGCCACGAGGCTGTGACTCGAGCCCGAGTGTCCGACC
TGGAGTTGGATAGCGCTCGGCCTCGAAATGCGATCTTGTCACCGGATGCG
GGCACGAGGGGGCAGGCAACAATGATAGTGACTGCAACGGCGGTGGCGGG
AGGGTCCGCGGTGGGACCAGCGGAATATCTGCAGTGGCTTGGAGATATGT
CAAGTATGCTGGTGCACGAGCAGTGGCGGAAGGAGGTATAAAATGTGGAC
CAGCACACACTATAGATGATGCATTCTGTGTGTAAAATTTCGTCCCATGG
GAGGAGACAGTTTCGGGAGAATCCCCCAAGATTCCCTCAGGGTAACAACT
GCTTTCTTTTTGAGAAGCTTCGACCCCGAAGCATGGAAGCATGGCCCATT
TCTTTATCGTTCGTTTTGACTTTCACCCCCTGAACGAAGAAATTATAATG
ACACCATTCGGTTAACGTCTGATAAACAGTATTGTCAGAATTGCCAGTCA
ACCTTCAAGTACTGTCTATCCAGCCCGACAAAAAGAAATGAAAAAACAAA
GTCTTGCAAAATATCATTGTCTTTCCTCGCTGCTGTGACGTTTGGGGGTG
ACGTTTTTTATTTGGAGCAGGCGCTCTTGTCGAAGGTGGACTTCGGCCCA
GACGATTCGTCGCAACGAGTGAGGATGCACGCAAAGGCTCACTGGTCGTC
GAGATCAACCGAGAGCCTCTTGGACCGAGCTTTGATAGACAACGCTTTAG
ATGCAGCGCAGGTTGTACCCCTCTCAAAAAGCCGATGACGGGCGCTCCAC
TACAGGTGTACGATAGATTACGCGGGCTTTGCCTGTGTATACTGTTTGGG
TCTGACGCTTTTTGCGAGCGATCATCGTTTGTTGATTTATGTTGCTAACT
ACTGGCCGTGCTTTCTTTCGACAAGCGCTCTGTGGGCATTTCGTGTGTTC
GCGTGTGCTTTTCTCTAGATTGGACATGACCGTGTTTTTACATATCAATT
TTAACATGATTTCGGGGCGAATTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig386:26589..29565+

>mRNA_H-paniculata_contig386.10094.1 ID=mRNA_H-paniculata_contig386.10094.1|Name=mRNA_H-paniculata_contig386.10094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig386:26589..29565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCACACTGCGTCTGACATTACGGGTCTGGCTCTGTGTAGCTCTGT
GTATTCGACCGTGCTTATCGGTGGCATGGCAACTCCTCGTCGAAATGATG
AATTAACAGATGGAGGAAGGAATGCGGATGAAAGATATAGCAATGAAGCG
CCTCGTTCGAATTCCCAGAAGGTTCAGAGCAAGATTATGCAAGGAGGCAG
CCCGTTAACAACGAAAGCTCGACAAGTGCAGCGACGATATCGCTCACTCT
TTCACCAAGGAGCCAAAGAGATGCCCCACACTGCGTCTGACATTACGGGT
CTGGCTCTGTGTAGCTCTGTGTATTCGACCGTGCTTATCGGTGGCATGGC
AACTCCTCGTCGAAATGATGAATTAACAGATGGAGGAAGGAATGCGGATG
AAAGATATAGCAATGAAGCGCCTCGTTCGAATTCCCAGAAGGTTCAGAGC
AAGATTATGCAAGGAGGCAGCCCGTTAACAACGAAAGCTCGACAAGTGCA
GCGACGATATCGCTCACTCTTTCACCAAGGAGCCAAAGAGTACCAAGGCT
GGTGTGAAGGCGAGGCAGACGCTCAGCGAGCCTTGGGATCCGTGTGCCAC
CTTTTGGATCGCCTTCGCATGTTGGAGCCGGGCCTGCATCAATACCAAGG
CTGGTGTGAAGGCGAGGCAGACGCTCAGCGAGCCTTGGGATCCGTGTGCC
ACCTTTTGGATCGCCTTCGCATGTTGGAGCCGGGCCTGCATCAAGATGGG
GACGGAACTCTTGGGGGACTGGCAAACCTACCGGGTTGTCGAACGCTGCT
GATAAGAAAGCACACGGTGGAGCTGGAGCGAGTGATGCGGCTCTGGCGCG
CGCTTGTTCAGCAGATGAAAGGCCAGGATGGGGACGGAACTCTTGGGGGA
CTGGCAAACCTACCGGGTTGTCGAACGCTGCTGATAAGAAAGCACACGGT
GGAGCTGGAGCGAGTGATGCGGCTCTGGCGCGCGCTTGTTCAGCAGATGA
AAGGCCAGGTGTCTCGCATCGAGGAGGCTCTTGCTGACGCATGGCAGCTA
CACCGCCACGAGGCTGTGACTCGAGCCCGAGTGTCCGACCTGGAGTTGGA
TAGCGCTCGGCCTCGAAATGCGATCTTGTCACCGGATGCGGGCACGAGGG
GGCAGGCAACAATGATAGTGACTGCAACGGCGGTGGCGGGAGGGTCCGCG
GTGGGACCAGCGGAATATCTGCAGTGGCTTGGAGATATGTCAAGTATGCT
GGTGCACGAGCAGTGGCGGAAGGAGGTGTCTCGCATCGAGGAGGCTCTTG
CTGACGCATGGCAGCTACACCGCCACGAGGCTGTGACTCGAGCCCGAGTG
TCCGACCTGGAGTTGGATAGCGCTCGGCCTCGAAATGCGATCTTGTCACC
GGATGCGGGCACGAGGGGGCAGGCAACAATGATAGTGACTGCAACGGCGG
TGGCGGGAGGGTCCGCGGTGGGACCAGCGGAATATCTGCAGTGGCTTGGA
GATATGTCAAGTATGCTGGTGCACGAGCAGTGGCGGAAGGAGGCGCTCTT
GTCGAAGGTGGACTTCGGCCCAGACGATTCGTCGCAACGAGTGAGGATGC
ACGCAAAGGCTCACTGGTCGTCGAGATCAACCGAGAGCCTCTTGGACCGA
GCTTTGATAGACAACGCTTTAGATGCAGCGCAGGTTGTACCCCTCTCAAA
AAGCCGATGAGCGCTCTTGTCGAAGGTGGACTTCGGCCCAGACGATTCGT
CGCAACGAGTGAGGATGCACGCAAAGGCTCACTGGTCGTCGAGATCAACC
GAGAGCCTCTTGGACCGAGCTTTGATAGACAACGCTTTAGATGCAGCGCA
GGTTGTACCCCTCTCAAAAAGCCGATGA
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