mRNA_H-paniculata_contig38572.10086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38572.10086.1
Unique NamemRNA_H-paniculata_contig38572.10086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: D8LBW2_ECTSI (Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.070e-35
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 LAAQQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            +A + + GVV+RV+SPGGDA ASDLMWREVRRLRE+GKVV+ASVA VAASGGYYIAMGCE+IVCDE+SITGSIGVV A    GEL +K+
Sbjct:  501 IADKSIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKI 589          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A7S0X169_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X169_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 9.620e-28
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            + V+ VV+RV+SPGGDALASDLMWREV++L E  K VIAS+A VAASGGYYIAM C KIV + +++TGSIGVV  KF  GELY KV
Sbjct:  407 KSVAAVVLRVDSPGGDALASDLMWREVKKLAEK-KPVIASMADVAASGGYYIAMACSKIVAEPLTVTGSIGVVTGKFNLGELYAKV 491          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A7C9AD89_OPUST (Peptidase_S49 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AD89_OPUST)

HSP 1 Score: 105 bits (262), Expect = 6.200e-26
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            ++   VVIR++SPGGDALASDL+WRE+R L  A K VIAS+A VAASGGYYIAM    IV + +++TGSIGVV+ KF+ G+LY+K+
Sbjct:   82 KRYKAVVIRIDSPGGDALASDLLWREIRLLA-AEKPVIASLADVAASGGYYIAMAAGTIVAENLTLTGSIGVVKGKFSLGKLYEKI 166          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A371ERT0_MUCPR (Serine protease SPPA, chloroplastic (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371ERT0_MUCPR)

HSP 1 Score: 104 bits (260), Expect = 8.680e-26
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            ++    +IR++SPGGDALASDLMWRE++ L  A K VIAS+A VAASGGYY+AMG + IV + +++TGSIGVV  KF  G+LY+K+
Sbjct:   94 KKFKAAIIRIDSPGGDALASDLMWREIQLLA-ASKPVIASMADVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKI 178          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A7S1TAP7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TAP7_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 2.580e-25
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            + V  +++R++SPGG ALASDLMW E+R +RE  K +IAS+  VAASGGYYIAM C +IVC+  +ITGS+GVV AK + GELY +V
Sbjct:  421 KDVKAIILRIDSPGGSALASDLMWGELRAVREK-KPIIASMVDVAASGGYYIAMACNRIVCERSTITGSVGVVTAKLSLGELYQRV 505          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A0R0JK38_SOYBN (Peptidase_S49 domain-containing protein (Fragment) n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0JK38_SOYBN)

HSP 1 Score: 105 bits (261), Expect = 3.390e-25
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            ++    +IR++SPGGDALASDLMWRE+R L  A K VIAS++ VAASGGYY+AMG + IV + +++TGSIGVV  KF  G+LY+K+
Sbjct:   58 KEFKAAIIRIDSPGGDALASDLMWREIRLLA-ASKPVIASMSDVAASGGYYMAMGADVIVAESLTLTGSIGVVTGKFNLGKLYEKI 142          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A328DA81_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328DA81_9ASTE)

HSP 1 Score: 107 bits (268), Expect = 3.490e-25
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            ++   VVIR++SPGGDALASDLMWRE+R L E  K V+AS+A VAASGGYY+AMG + IV + +++TGSIGVV  KF  G+LY+K+
Sbjct:  412 KKYKAVVIRIDSPGGDALASDLMWREIRLLAET-KPVVASMADVAASGGYYMAMGAQAIVAENLTLTGSIGVVAGKFNLGKLYEKL 496          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A699ZIY6_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIY6_HAELA)

HSP 1 Score: 107 bits (266), Expect = 4.240e-25
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1
Query:   16 VSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            V+ VV+RV+SPGGDALASDLMWRE+++L E  K VIAS+A VAASGGYY++M   KIV + ++ITGSIGVV  KF   ELY KV
Sbjct:  377 VAAVVLRVDSPGGDALASDLMWREIKKLGEK-KPVIASMADVAASGGYYLSMAAHKIVAEPLTITGSIGVVTGKFNLAELYGKV 459          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: A0A388JXK6_CHABU (Peptidase_S49 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JXK6_CHABU)

HSP 1 Score: 102 bits (255), Expect = 4.640e-25
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 1
Query:   25 VVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            VV+R++SPGGDALASDLMWRE+R L E  K VIAS++ VAASGGYY+AMG   IV +++++TGSIGVV AK   G LY K+
Sbjct:   33 VVVRIDSPGGDALASDLMWRELRLLSEQ-KPVIASMSDVAASGGYYMAMGTNVIVAEKLTLTGSIGVVSAKINLGNLYKKI 112          
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Match: UPI0009016EE6 (serine protease SPPA, chloroplastic n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009016EE6)

HSP 1 Score: 107 bits (267), Expect = 4.790e-25
Identity = 52/86 (60.47%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   10 QQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAASGGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKV 267
            ++   VVIR++SPGGDALASDLMWRE+R L E+ K V+AS+A VAASGGYY++MG + IV + +++TGSIGVV  KF  G LY+K+
Sbjct:  421 KRYKAVVIRIDSPGGDALASDLMWREIRLLAES-KPVVASMADVAASGGYYMSMGAQAIVAENLTLTGSIGVVTGKFNLGNLYEKI 505          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38572.10086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW2_ECTSI1.070e-3575.28Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S0X169_9CHLO9.620e-2868.60Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7C9AD89_OPUST6.200e-2661.63Peptidase_S49 domain-containing protein n=1 Tax=Op... [more]
A0A371ERT0_MUCPR8.680e-2659.30Serine protease SPPA, chloroplastic (Fragment) n=1... [more]
A0A7S1TAP7_9RHOD2.580e-2559.30Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0R0JK38_SOYBN3.390e-2559.30Peptidase_S49 domain-containing protein (Fragment)... [more]
A0A328DA81_9ASTE3.490e-2561.63Uncharacterized protein n=1 Tax=Cuscuta australis ... [more]
A0A699ZIY6_HAELA4.240e-2565.48Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
A0A388JXK6_CHABU4.640e-2564.20Peptidase_S49 domain-containing protein n=1 Tax=Ch... [more]
UPI0009016EE64.790e-2560.47serine protease SPPA, chloroplastic n=2 Tax=Ipomoe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38572contigH-paniculata_contig38572:124..872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D8LBW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.signal peptide processing
EggNOG OGs2QQH5@2759,COG0616@1
Ec32 ortholog descriptionsignal peptide peptidase
Ec32 orthologEc-20_003490.1
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930184.1679826-CDS-H-paniculata_contig38572:123..3301622930184.1679826-CDS-H-paniculata_contig38572:123..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38572 124..330 -
1691481181.787971-CDS-H-paniculata_contig38572:123..3301691481181.787971-CDS-H-paniculata_contig38572:123..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38572 124..330 -
1622930184.182961-CDS-H-paniculata_contig38572:785..8721622930184.182961-CDS-H-paniculata_contig38572:785..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38572 786..872 -
1691481181.8003576-CDS-H-paniculata_contig38572:785..8721691481181.8003576-CDS-H-paniculata_contig38572:785..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38572 786..872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38572.10086.1prot_H-paniculata_contig38572.10086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38572 124..872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38572.10086.1

>prot_H-paniculata_contig38572.10086.1 ID=prot_H-paniculata_contig38572.10086.1|Name=mRNA_H-paniculata_contig38572.10086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
LAAQQVSGVVIRVNSPGGDALASDLMWREVRRLREAGKVVIASVAGVAAS
GGYYIAMGCEKIVCDEVSITGSIGVVQAKFAFGELYDKVCTGVLHIP*
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mRNA from alignment at H-paniculata_contig38572:124..872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38572.10086.1 ID=mRNA_H-paniculata_contig38572.10086.1|Name=mRNA_H-paniculata_contig38572.10086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=749bp|location=Sequence derived from alignment at H-paniculata_contig38572:124..872- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTGCACAACAGGTATCTGGAGTAGTAATCAGGGTCAATTCTCCAGG GGGTGATGCGCTGGCGTCCGATCTCATGTGGCGTGAGGTAAGCGGATGTT GCAAAGGTCGTCACTGTACAGCAGCACCAGTATCAGTATGCTGCCCATTT ACTGGGCTTTTGTTCCGAACTTTAGACTTGGCAAAAAATGGGTCATTAGA TAACAGTTATTCAGTCCCTCTGTTCATATACTGCTTGTATTGTTATTCTC TTTTTTCCCTTTCCAGTTTTCATCGTGTCTAATGTACTGAATTTGGTCCT CCATAATACTGGGTATTTACTGGTACAGTACTGGTATGACTTTGGGAATG AAGTTACGTCTTTCGTTTTCGTGGCCGTGAAATTACTGTCGGCTAGTCAT CATACCGATATTGAAATTTTGCACGCAGATGTTTATTTTGGCAAACACTC TGTAATACCCGTATATATATATATACATATATATATATTTACATTGATTT CCCTCCTAAATATGAATATTTTCGCCTACATGAACGACCTAGGTGCGGCG ATTGCGAGAGGCGGGCAAGGTGGTGATTGCTTCCGTGGCCGGCGTAGCTG CTTCGGGAGGTTATTACATCGCAATGGGCTGCGAGAAGATCGTATGCGAC GAGGTCAGCATCACGGGGAGCATTGGCGTGGTGCAAGCGAAGTTCGCGTT CGGGGAGCTGTACGATAAGGTTTGTACCGGGGTATTACATATTCCCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig38572:124..872-

>mRNA_H-paniculata_contig38572.10086.1 ID=mRNA_H-paniculata_contig38572.10086.1|Name=mRNA_H-paniculata_contig38572.10086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig38572:124..872- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTGCACAACAGGTATCTGGAGTAGTAATCAGGGTCAATTCTCCAGG
GGGTGATGCGCTGGCGTCCGATCTCATGTGGCGTGAGCTTGCTGCACAAC
AGGTATCTGGAGTAGTAATCAGGGTCAATTCTCCAGGGGGTGATGCGCTG
GCGTCCGATCTCATGTGGCGTGAGGTGCGGCGATTGCGAGAGGCGGGCAA
GGTGGTGATTGCTTCCGTGGCCGGCGTAGCTGCTTCGGGAGGTTATTACA
TCGCAATGGGCTGCGAGAAGATCGTATGCGACGAGGTCAGCATCACGGGG
AGCATTGGCGTGGTGCAAGCGAAGTTCGCGTTCGGGGAGCTGTACGATAA
GGTTTGTACCGGGGTATTACATATTCCCTAAGTGCGGCGATTGCGAGAGG
CGGGCAAGGTGGTGATTGCTTCCGTGGCCGGCGTAGCTGCTTCGGGAGGT
TATTACATCGCAATGGGCTGCGAGAAGATCGTATGCGACGAGGTCAGCAT
CACGGGGAGCATTGGCGTGGTGCAAGCGAAGTTCGCGTTCGGGGAGCTGT
ACGATAAGGTTTGTACCGGGGTATTACATATTCCCTAA
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