mRNA_H-paniculata_contig3853.10084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3853.10084.1
Unique NamemRNA_H-paniculata_contig3853.10084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 6.520e-62
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLGG 369
            QVFLALDKSPLLFRPVSLRGVLARP+EIAE+IASNYA DALL SLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKA+PQGPSST RATFRGVSSLLRHASAGTLSSVSGV+NALSRNLGG
Sbjct: 4355 QVFLALDKSPLLFRPVSLRGVLARPDEIAEQIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAMPQGPSSTFRATFRGVSSLLRHASAGTLSSVSGVSNALSRNLGG 4476          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A2R5GB42_9STRA (Vacuolar protein sorting-associated protein 13B n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GB42_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.040e-21
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    7 VFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQG--PSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            +F+ +D++PL F  VSL  V    + +  ++A+NY ADALLGS A++GSLE LG+P       G GVYDL   P+KA+  G  P   +R   RG SSLL H S G L SVSG +N+++RNL
Sbjct: 3620 MFVGIDRTPLRFSEVSLVRVFEGAKALRNELAANYIADALLGSPALLGSLEILGNPVGFARSVGAGVYDLVFQPLKAIRHGYGPGGILRGVARGWSSLLIHLSEGALMSVSGFSNSIARNL 3740          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A0H5QH82_9EUKA (VPS13_C domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QH82_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-17
Identity = 45/123 (36.59%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 AQVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLGG 369
            ++ +L     P+    V L+ VL+  + + +++++NY AD ++ S  + GS++ LG+PT L+S + KG+  L  +P +A+ +GP +   AT +G+ SLL++ S GTL+SVSG T++L+RN+ G
Sbjct: 1725 SRAYLGCQSLPVRLSAVELKSVLSSSDRLIKELSANYLADVIMISPLLFGSMDLLGNPTQLISSFSKGIQGLVRLPSRALTRGPRALAWATLQGIGSLLQNISEGTLTSVSGFTHSLARNVDG 1847          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75)

HSP 1 Score: 86.3 bits (212), Expect = 3.610e-17
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            ++FLA D +PL F     R +   P  +A  +  +YAA A L +  VVGSL+ LGSPT++L E   G+ DLF MP +    GP S I    RG +SLLRH SAG ++SV+    ++SRN+
Sbjct: 3697 KLFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRGAASLLRHTSAGAITSVTNFALSVSRNM 3816          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: H2XP00_CIOIN (Uncharacterized protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2XP00_CIOIN)

HSP 1 Score: 85.1 bits (209), Expect = 9.130e-17
Identity = 45/120 (37.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            ++++++D+  L F   S R V     E+ +++  +Y A+ + G+  V+GSL+ LG+P T L  + KGV D   MP + +  GP++ +    RG+SSLLRH S+GTL SV+ + +++SRNL
Sbjct: 3092 KLYVSIDRGVLSFSKFSCRDVDTTVAELTQELMRHYFAETVFGAGWVIGSLDLLGNPATALRSYAKGVSDFLLMPYEGLMMGPTAFVGGFTRGLSSLLRHLSSGTLRSVTNIASSISRNL 3211          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: R7TEM8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TEM8_CAPTE)

HSP 1 Score: 83.2 bits (204), Expect = 4.320e-16
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            +VFLA D +PL F     + +    +++A  +   YA+ AL  +  VVGSLE LG+PT L     +GV DLF MP + + +GP + I    RG+ SLLRH S GTL+S++   +++SRN+
Sbjct: 3439 KVFLASDNTPLKFGRYE-KSLFTSYQQLARSLTMYYASGALFRAGLVVGSLEILGNPTGLARHLSQGVADLFRMPYQGLTRGPGAFIGGVTRGMGSLLRHVSTGTLNSITSFASSVSRNM 3557          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A8B7YAP6_ACAPL (vacuolar protein sorting-associated protein 13B-like isoform X1 n=4 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YAP6_ACAPL)

HSP 1 Score: 80.5 bits (197), Expect = 3.780e-15
Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            ++F+A D +PL FR      + A   ++A+ +  +Y + AL  +  V+GSLE LG+P  LL   G G+ D   +P + + +GP++ +     G SSLLRH SAGTL+S++   +++SRNL
Sbjct: 2668 KLFIAADSTPLSFRQFDSGPMFATTRQLAQALTMHYTSGALFKAGWVLGSLELLGNPAGLLRNVGSGLADSVMLPYEGLTRGPAAFVAGVTSGTSSLLRHLSAGTLTSITKFASSVSRNL 2787          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A6P4ZTE8_BRABE (vacuolar protein sorting-associated protein 13B-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZTE8_BRABE)

HSP 1 Score: 80.1 bits (196), Expect = 5.190e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            +VF++ D + L F+  S   V      + + +A +Y + AL  +  V+GSL+ LGSP +LL     G+ D F +P + + +GP + +    +G SSL+RH SAGTL+S+  + N++SRN+
Sbjct: 3549 KVFISSDHTRLTFKHFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3668          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: C3ZQS8_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQS8_BRAFL)

HSP 1 Score: 80.1 bits (196), Expect = 5.190e-15
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    4 QVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            +VF++ D + L F+  S   V      + + +A +Y + AL  +  V+GSL+ LGSP +LL     G+ D F +P + + +GP + +    +G SSL+RH SAGTL+S+  + N++SRN+
Sbjct: 3880 KVFISSDHTRLTFKNFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3999          
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Match: A0A4D9D6P0_9STRA (VPS13_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6P0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.380e-14
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 AQVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            ++VFL LD SPL F  V L  V + P+   + I SNY ADA+  S A++GSLE +GSP  L+S    G+ DL  +         S ++    RG+ SL RH   GTL+S++G ++++ RNL
Sbjct: 1020 SRVFLGLDGSPLFFEGVRLTDVFSTPQAFLKGILSNYVADAIFRSPALLGSLEIIGSPAILVSRVVSGLKDLVLL-------SASGSLTGAGRGLLSLTRHVVGGTLASLAGFSSSVRRNL 1133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3853.10084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE6.520e-6294.26VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2R5GB42_9STRA6.040e-2147.11Vacuolar protein sorting-associated protein 13B n=... [more]
A0A0H5QH82_9EUKA1.030e-1736.59VPS13_C domain-containing protein n=2 Tax=Spongosp... [more]
UPI000719AC753.610e-1743.33vacuolar protein sorting-associated protein 13B-li... [more]
H2XP00_CIOIN9.130e-1737.50Uncharacterized protein n=3 Tax=Ciona intestinalis... [more]
R7TEM8_CAPTE4.320e-1640.83Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A8B7YAP6_ACAPL3.780e-1537.50vacuolar protein sorting-associated protein 13B-li... [more]
A0A6P4ZTE8_BRABE5.190e-1535.83vacuolar protein sorting-associated protein 13B-li... [more]
C3ZQS8_BRAFL5.190e-1535.83Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
A0A4D9D6P0_9STRA2.380e-1440.50VPS13_C domain-containing protein n=1 Tax=Nannochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3853contigH-paniculata_contig3853:14038..15095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue5.4e-54
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930183.998079-CDS-H-paniculata_contig3853:14037..141601622930183.998079-CDS-H-paniculata_contig3853:14037..14160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3853 14038..14160 -
1691481181.7153234-CDS-H-paniculata_contig3853:14037..141601691481181.7153234-CDS-H-paniculata_contig3853:14037..14160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3853 14038..14160 -
1622930184.0133357-CDS-H-paniculata_contig3853:14849..150951622930184.0133357-CDS-H-paniculata_contig3853:14849..15095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3853 14850..15095 -
1691481181.7271283-CDS-H-paniculata_contig3853:14849..150951691481181.7271283-CDS-H-paniculata_contig3853:14849..15095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3853 14850..15095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3853.10084.1prot_H-paniculata_contig3853.10084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3853 14038..15095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3853.10084.1

>prot_H-paniculata_contig3853.10084.1 ID=prot_H-paniculata_contig3853.10084.1|Name=mRNA_H-paniculata_contig3853.10084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
AQVFLALDKSPLLFRPVSLRGVLARPEEIAEKIASNYAADALLGSLAVVG
SLEALGSPTTLLSEWGKGVYDLFAMPIKAVPQGPSSTIRATFRGVSSLLR
HASAGTLSSVSGVTNALSRNLGG
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mRNA from alignment at H-paniculata_contig3853:14038..15095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3853.10084.1 ID=mRNA_H-paniculata_contig3853.10084.1|Name=mRNA_H-paniculata_contig3853.10084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig3853:14038..15095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAGGTATTCTTAGCTCTCGACAAATCGCCGCTGCTTTTTCGACCGGT GTCGCTGCGGGGTGTGCTGGCGCGTCCAGAGGAGATAGCGGAGAAAATCG CCTCTAACTACGCTGCAGACGCTCTATTGGGCTCGTTGGCGGTGGTCGGG TCGTTGGAGGCCTTGGGAAGCCCGACCACCTTGCTGTCAGAGTGGGGAAA GGGTGTTTATGATCTGTTCGCCATGCCGATCAAGGCTGTGCCGCAGGTGT GTGTGTGTGTTTGTTGTTGTCGAAATACGTATTAGTTTTGTGTGATTGGT TTCAAGGTGGGCATGAGAAAATGTACGGTGCGTTTGTGGGAGAGGGGTTC CTGGTTGCACCATGAGCGGTTTCCTCTCTTTTTGTCTTTTGTTTTAGCAA TCTATCTCCGTCAAGTGCGTGCAGTGGTCTAAAGGTTCCAAGCGTGGATA GGTGGTCCGAAAACGATCACTTGTTATCATTGCGGCGACGGAAAGCACAG TCAAAAATGGGGATGTTCCCTCCCCCCCCCCCCCCTCCCTTGGGGAACGG AAAGGTGATGGCGTACCTGGTGAAGACACATAAAACACGAGCACGCCTCT CCAGGTCGTTCCAATGTTCTTCGTAGTATATATTTATTTTTCTACTTTTC AATACGTTAGCCTGATCACGCAGATCCGCAGTCAGACGGTAGAAGTTTCC CGTGGCAACTCCACATATAGATCTTCTATCATTCTGACCGCGGATCTGCG TGATCGGACTAAAGTGTTGAATAGTAATATAGTGGCAACACTAGTCCACA CGCTGGCCGATACGTGCCTCTCTCAAGTTGCTTTGCGCGCAGTCTCGAGT CTTGGCACACATTTCCAAATGCCGCCCCAACCCCCGCCGTCTCTCCTCCC CACCCTCATCTATTAATCGTTTTTCATGTTCCCAGGGCCCGTCCTCAACG ATTCGAGCCACTTTCCGGGGGGTGTCATCCCTGTTGAGACATGCCTCCGC AGGCACTCTGTCGTCTGTTTCGGGGGTAACAAACGCGCTGTCCCGGAATC TGGGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3853:14038..15095-

>mRNA_H-paniculata_contig3853.10084.1 ID=mRNA_H-paniculata_contig3853.10084.1|Name=mRNA_H-paniculata_contig3853.10084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig3853:14038..15095- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAGGTATTCTTAGCTCTCGACAAATCGCCGCTGCTTTTTCGACCGGT
GTCGCTGCGGGGTGTGCTGGCGCGTCCAGAGGAGATAGCGGAGAAAATCG
CCTCTAACTACGCTGCAGACGCTCTATTGGGCTCGTTGGCGGTGGTCGGG
TCGTTGGAGGCCTTGGGAAGCCCGACCACCTTGCTGTCAGAGTGGGGAAA
GGGTGTTTATGATCTGTTCGCCATGCCGATCAAGGCTGTGCCGCAGGCGC
AGGTATTCTTAGCTCTCGACAAATCGCCGCTGCTTTTTCGACCGGTGTCG
CTGCGGGGTGTGCTGGCGCGTCCAGAGGAGATAGCGGAGAAAATCGCCTC
TAACTACGCTGCAGACGCTCTATTGGGCTCGTTGGCGGTGGTCGGGTCGT
TGGAGGCCTTGGGAAGCCCGACCACCTTGCTGTCAGAGTGGGGAAAGGGT
GTTTATGATCTGTTCGCCATGCCGATCAAGGCTGTGCCGCAGGGCCCGTC
CTCAACGATTCGAGCCACTTTCCGGGGGGTGTCATCCCTGTTGAGACATG
CCTCCGCAGGCACTCTGTCGTCTGTTTCGGGGGTAACAAACGCGCTGTCC
CGGAATCTGGGAGGCGGCCCGTCCTCAACGATTCGAGCCACTTTCCGGGG
GGTGTCATCCCTGTTGAGACATGCCTCCGCAGGCACTCTGTCGTCTGTTT
CGGGGGTAACAAACGCGCTGTCCCGGAATCTGGGAGGC
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