mRNA_H-paniculata_contig384.10057.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE) HSP 1 Score: 302 bits (774), Expect = 3.510e-96 Identity = 180/374 (48.13%), Postives = 224/374 (59.89%), Query Frame = 1
Query: 82 LGTLPLPLVSEIGAFSAGGFLSGACRTTLEALRELHYKVDME--VHAHSFSEAEDILCHTS---TEHMGLQADGALVTGRAVTRITIKGCGDRQDQEAGYEVLEKAIKRVVRHSIPTLRSITIKA----------RGQSCN-------------------RIAAVLDALVPLSTKQYRVASNLVRVELVDGPSGVAKAGRAIAAGLWPALEELVVARCHANAEQFKKVAQGIASGKVPNLRVLNWDRQTYHRRRPLDDVLLLALSAGKCPLIESLSFTDNRFCPEFSIFYIRQALRACPKLQELRMDCSRTPRNELVELVSALREGSAPHLASLFVRSTKAYHMSDETKPAVQALRETVQLRIPPVCVEVQIKT 1101
L LP ++ EI +F+ LSG CRTTL +RELHYKVDM A+ F C + T+HMG+ A GAL TGRAV RITI + QD LE+AI+RVV+HSIPTLR ITI+ G SC+ A+L LVPLS K++RVA L RV LVDG +GVAKAGRA+A GLWPALE L + C ANA F+ +A+G+ SG P LRVL WD Q+ R +DDV+L ALS G+CPL+E LSFT NRFCPE I Y+ + L CP+L+ELRMDCSRTP +EL L AL G P L L VR+T Y+ + + ++AL+ R PPV +E+QIKT
Sbjct: 79 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGGIRELHYKVDMAKVASAYFFGRLAAAYCSKTLELTDHMGIDASGALATGRAVVRITITHVHETQDP-----ALEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYRDSDVE--LRALKRVAASRSPPVELELQIKT 445
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI) HSP 1 Score: 282 bits (722), Expect = 2.700e-90 Identity = 156/286 (54.55%), Postives = 196/286 (68.53%), Query Frame = 1
Query: 265 HMGLQADGALVTGRAVTRITIKGCGDRQDQE---AGYEVLEKAIKRVVRHSIPTLRSITIKA----RGQSCNRIAAVLDALVPLSTKQYRVASNLVRVELVDGPSGVAKAGRAIAAGLWPALEELVVARCHANAEQFKKVAQGIASGKVPNLRVLNWDRQTYHRRRPLDDVLLLALSAGKCPLIESLSFTDNRFCPEFSIFYIRQALRACPKLQELRMDCSRTPRNELVELVSALREGSAPHLASLFVRSTKAYHMSDETKPAVQALRETVQLRIPPVCVEVQIKT 1101
HMGL+A GAL TGRA+ RITI + ++ A Y+ LE+A+ RVVRHSIPTLR ITI+ G++ R+ A+L LVPLS K++RVA L RV LVDG +GVAKAGRA+AAGLWPALE L + C ANA F+ +A+G+ SG P LRVL WD Q+ R +DDV+L ALS GKCPL+E LSFT NRFCPE SI Y+ +AL CP+L+ELRMDCSRTP ++L LV AL G P L L VR+T Y+ + + + AL+ R PPV +E+QIKT
Sbjct: 21 HMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRA--RVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVE--LLALKRAAASRSPPVELELQIKT 302
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI) HSP 1 Score: 274 bits (701), Expect = 3.610e-87 Identity = 156/297 (52.53%), Postives = 194/297 (65.32%), Query Frame = 1
Query: 223 FSEAEDILCHTSTEHMGLQADGALVTGRAVTRITIKGCGDRQDQEAGYEVLEKAIKRVVRHSIPTLRSITIKA----RGQSCNRIAAVLDALVPLSTKQYRVASNLVRVELVDGPSGVAKAGRAIAAGLWPALEELVVARCHANAEQFKKVAQGIASGKVPNLRVLNWDRQTYHRRRPLDDVLLLALSAGKCPLIESLSFTDNRFCPEFSIFYIRQALRACPKLQELRMDCSRTPRNELVELVSALREGSAPHLASLFVRSTKAYHMSDETKPAVQALRETVQLRIPPVCVEVQIKT 1101
+S +ED T HMGL A GAL TGRAV RITI QD LE+AI+RVV+HSIPTLR I I+ G++ R+ A+L LVPLS K++RVA L RV LVDG +GVAKAGRA+AAGLWPALE L + C ANA F+ +A+G+ SG P LRVL WD Q+ R +DDV+L ALS G+CPL+E LSFT NRFCPE I Y+ + L CP+L+ELRMDCSRTP ++L L AL G P L L VR+T Y+ + + + AL+ R PPV +E+QIKT
Sbjct: 11 YSPSEDPTGAELTNHMGLDASGALATGRAVVRITITYVHHFQDP-----ALEQAIRRVVQHSIPTLREIAIRGYPTWTGRA--RVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVE--LLALKRAAASRSPPVELELQIKT 298
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI) HSP 1 Score: 277 bits (708), Expect = 2.180e-85 Identity = 179/425 (42.12%), Postives = 220/425 (51.76%), Query Frame = 1
Query: 82 LGTLPLPLVSEIGAFSAGGFLSGACRTTLEALRELHYKVDMEVHAHSFSEAEDILCHTSTEHMGLQADGALVTGRAVTRITIKGCGDRQDQEAGYEVLEKAIKRVVRHSIPTLRSITIK-----------------------------------------------------------------------------ARGQSCNR--------IAAVLDALVPLSTKQYRVASNLVRVELVDGPSGVAKAGRAIAAGLWPALEELVVARCHANAEQFKKVAQGIASGKVPNLRVLNWDRQTYHRRRPLDDVLLLALSAGKCPLIESLSFTDNRFCPEFSIFYIRQALRACPKLQELRMDCSRTPRNELVELVSALREGSAPHLASLFVRSTKAYHMSDETKPAVQALRETVQLRIPPVCVEVQIKT 1101
L LP ++ EI +F+ LSG CRTTL A+RELHYK+DM S A + T HMGL A GAL TGRAV RITI QD LE+AI+RVV+HSIPTLR I I+ ARG + A+L LVPLS K++RVA L RV LVDG +GVAKAGRA+AAGLWPALE L + C ANA F+ +A+G+ SG P LRVL WD Q+ R +DDV+L ALS G+CPL+E LSFT NRFCPE I Y+ + L CP+L+ELRMDCSRTP ++L L AL G P L L VR+T Y+ + + + AL+ R PPV +E+QIKT
Sbjct: 106 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGAIRELHYKIDMN----KVSSAHYLKRSELTNHMGLDASGALATGRAVVRITITHVLHAQDP-----ALEQAIRRVVQHSIPTLREIAIRRYPTWNGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVE--LLALKRAAASRSPPVELELQIKT 519
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.850e-61 Identity = 110/214 (51.40%), Postives = 139/214 (64.95%), Query Frame = 1
Query: 460 RIAAVLDALVPLSTKQYRVASNLVRVELVDGPSGVAKAGRAIAAGLWPALEELVVARCHANAEQFKKVAQGIASGKVPNLRVLNWDRQTYHRRRPLDDVLLLALSAGKCPLIESLSFTDNRFCPEFSIFYIRQALRACPKLQELRMDCSRTPRNELVELVSALREGSAPHLASLFVRSTKAYHMSDETKPAVQALRETVQLRIPPVCVEVQIKT 1101
R+ A+ LVPLS K++RVA L RV LVDG +G AKAG+A+AAGL PALE + C ANA F+ +A+G+ SG P LRVL WD Q+ R LDDV+L ALS G CPL+E LSFT RFCPE SI Y+ + CP+L+ELRMDCSRTP ++L L AL P L L VR+T Y+ + + + AL+ R PPV +E+QIKT
Sbjct: 13 RVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYRDSDVE--LLALKLAAASRSPPVALELQIKT 224
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Match: A0A6H5KEB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB8_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 4.040e-11 Identity = 41/82 (50.00%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 82 LGTLPLPLVSEIGAFSAGGFLSGACRTTLEALRELHYKVDMEVHAHSFSEAEDILCHTSTEHMGLQADGALVTGRAVTRITI 327
L LP ++ EI +F+ LSG CRTTL A+RELHYKV+M ED++ HMGL A GAL TGR V RITI
Sbjct: 68 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGAIRELHYKVNM---------TEDVVGAEIKHHMGLDASGALATGRDVVRITI 140 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig384.10057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig384.10057.1 >prot_H-paniculata_contig384.10057.1 ID=prot_H-paniculata_contig384.10057.1|Name=mRNA_H-paniculata_contig384.10057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=367bp VATASARAADNRAASPPTPLAIIAPASLGTLPLPLVSEIGAFSAGGFLSGback to top mRNA from alignment at H-paniculata_contig384:19927..21444+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig384.10057.1 ID=mRNA_H-paniculata_contig384.10057.1|Name=mRNA_H-paniculata_contig384.10057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig384:19927..21444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig384:19927..21444+ >mRNA_H-paniculata_contig384.10057.1 ID=mRNA_H-paniculata_contig384.10057.1|Name=mRNA_H-paniculata_contig384.10057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at H-paniculata_contig384:19927..21444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |