mRNA_H-paniculata_contig3839.10054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI) HSP 1 Score: 303 bits (775), Expect = 1.710e-95 Identity = 156/336 (46.43%), Postives = 211/336 (62.80%), Query Frame = 3
Query: 129 ESAANIYKGSWWKQFLGSKRGHSWFNDWNTLLQPKIAELARMAEAEPDKP--PYRVLMVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDTAE-------GGGRGLCFRYDPYRFLNPAYAANAITDAYYFTAGLHLLHMFPN----RKIEPLAVQEWLAYETLLEWQVEAVRQRNGADVKILFCTTHTVADEMFVDDFALIRDAYRHRQGST--KSHEQTECEVQIAQMAL-------IEELPLVPPVREEIDLSRYPRSEGHFNVSSYCEEALMDRRGSLQLNRRARHAMARQGVPMVDSGVISEGQKWATEKGDGRHFEAIVPLE 1070
E ++ G WWK +L + G++WF+ WN +Q K+ LA +AE D P+RVLM+GDSTM HQFGA+C ++ ER+G RFD +V Q+ PGCC+DT GGGRGLCF+YD +RFL+P DAYYF +GLHLLHM+P+ +EPL VQ WL YE+LLE VE VR +NG DVK+ F T H +ADE+F ++ IR AYR +G+ ++ Q E VQ+ ++ + P + E I +P +G F V +YCEEA++DRRGSL ++RRAR M+R GVP+VD+ I EGQ WA+ DGRHF +VP+E
Sbjct: 25 EPCNDVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQRSAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRAKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYIT---HPEGQGLFTVDTYCEEAILDRRGSLHMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI) HSP 1 Score: 263 bits (673), Expect = 2.750e-80 Identity = 144/307 (46.91%), Postives = 192/307 (62.54%), Query Frame = 3
Query: 294 MVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDTAE-------GGGRGLCFRYDPYRFLNPAYAANAITDAYYFTAGLHLLHMFPN----RKIEPLAVQEWLAYETLLEWQVEAVRQRNGADVKILFCTTHTVADEMFVDDFALIRDAYRHRQGST--KSHEQTECEVQIAQMALIEELPL---------VPPVREEIDLSRYPRSEGHFNVSSYCEEALMDRRGSLQLNRRARHAMARQGVPMVDSGVISEGQKWATEKGDGRHFEAIVPLELFAFLSLLTTYPASYPA*PPPFGSRD 1148
MVGDSTM HQ+GA+C ++ ER+G R+D + Q G PGCC+DT GGGRGLCF +D +RFL+P AA DAYYF +GLHLLHM+P+ +EPL VQ WL YE+LLE V+AVR ++G +V+++F T H +ADE F ++ IR AYR G+T ++ Q + Q+ Q A +++ P + E + YP +G F V +YCEEA++DRRGSLQL+RRAR M+R GVP+VD+ I EGQ WA+ DGRHF IVP+E+ LS+L PA PP RD
Sbjct: 1 MVGDSTMSHQYGAICGFMGEREGRRYDPEKAQHGSPGCCMDTLPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAYYFGSGLHLLHMYPHWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAPDIAEYMV---YPEGQGLFTVDTYCEEAILDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAPPA-----PPSLTGRD 299
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.730e-56 Identity = 132/354 (37.29%), Postives = 179/354 (50.56%), Query Frame = 3
Query: 153 GSWWKQFLGSK-RGHSWFNDWNTLLQPKIAELARMAEAEPD------------KPPYRVLMVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDT--------------------------AEGGGRGLCFRYDPYRFLNPA-YAANAITDAYYFTAGLHLLHMFPNRKIEPLAVQEWLAYETLLEWQVEAVRQRNGADVKILFCTTHTVADEMFVDDFALIRDAYRHRQGSTKSHEQTECEVQIAQMALIEELPLVPPVREEIDLSRYPRSEGHFNVSSYCEEALMDRRGSLQLNRRARHAMARQGVPMVDSGVISEGQKWATEKGDGRHFEAIVPLELFAFLSLL 1094
G+ WK FL S G +WF WN++ QP+I ++A +AEAE + + P+RV MVGDSTM Q G +CA+LAER GS FD+ +Q CC+DT A GGGRG+CFR+ +FL P +A+ DA YF GLHLL P +E Q WL YE LE VE R GA +++F T+HT+ D ++ F + DAYR S +CE Q+ + + V +YC LMDR GS LNRR+R M+R GVP V+ +I + Q+WAT K DGRH+ +VP+E++ FL +L
Sbjct: 176 GARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAAGHQDE---CCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLL---PMDNMEGERAQAWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDGDMGVIS----KCEGQVRR---------------------------GYGVDAYCRLGLMDRNGSEVLNRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVEVWEFLGVL 492
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI) HSP 1 Score: 166 bits (419), Expect = 5.620e-45 Identity = 80/164 (48.78%), Postives = 105/164 (64.02%), Query Frame = 3
Query: 129 ESAANIYKGSWWKQFLGSKRGHSWFNDWNTLLQPKIAELARMAEAEPDKP--PYRVLMVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDTAE-------GGGRGLCFRYDPYRFLNPAYAANAITDAYYFTAGLHLLHMFPN----RKIEPLAVQ 581
E ++ G WWK +L + G++WF+ WN +Q K+ LA +AE D P+RVLM+GDSTM HQFGA+C ++ ER+G RFD +V Q PGCC+DT GGGRGLCF+YD +RFL+P DAYYF +GLHLLHM+P+ +EPL VQ
Sbjct: 25 EPCNDVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQGRAPGCCMDTLPKEDGGEGGGGRGLCFQYDHFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQ 188
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI) HSP 1 Score: 150 bits (380), Expect = 5.070e-39 Identity = 75/158 (47.47%), Postives = 101/158 (63.92%), Query Frame = 3
Query: 234 IAELARMAEAEPDKPPYRVLMVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDTAEGGGRGLCFRYDPYRFLNPAYAANAITDAYYFTAGLHLLHMFPN----RKIEPLAVQEWLAYETLLEWQVEAVRQRNGADVKILFCTTHTVADEM 695
+A L + + P+RVLMVGDSTMRHQ+GA+C ++ ER G R++ + EGGGRGLCF D RFL+P A DAYYF +GLHLLHM P+ +EPL VQ WL YE+LLE V+AVR+++G +VK++F T H +AD++
Sbjct: 68 LAALVENQQGGRREQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPRE-------------EGGGRGLCFELDQLRFLDPKRAGETSVDAYYFGSGLHLLHMLPHWPEMNPMEPLRVQSWLNYESLLEGVVQAVRKKSGQNVKLIFMTNHAIADQL 212
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.740e-29 Identity = 109/328 (33.23%), Postives = 144/328 (43.90%), Query Frame = 3
Query: 153 GSWWKQFLGSK-RGHSWFNDWNTLLQPKIAELARMAEAEPD------------KPPYRVLMVGDSTMRHQFGAMCAYLAERKGSRFDSKVYQKGDPGCCVDTA------EG-------------------GGRGLCFRYDPYRFLNPA-YAANAITDAYYFTAGLHLLHMFPNRKIEPLAVQEWLAYETLLEWQVEAVRQRNGADVK-----------ILFCTTHTVA--------------DEMFVDDFALIRDAYRHRQGSTKSHEQTECEVQIAQMALIEELPLVPPVREEIDLSRYPRSEGHFNVSSYCEEALMDRRGSLQLNR 944
G+ WK FL S G +WF WN ++QP+I +LA +AE E + + P+RV M+GDSTM Q G +CA+LAER GS FD+ +Q CC+DT EG GGRG+CFR +FL P + + DA YF +GLHLLHM +E Q WL YE LE VE R GA + F H V+ D ++ F + DAYR S +CE +++Q+A + EG + V +YC LMDR GS LNR
Sbjct: 98 GAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLFDAAGHQDE---CCIDTLPREPAEEGEDANDHGTPALDLHNHTVNGGRGVCFRRSFQKFLEPPEWESLGSPDAVYFGSGLHLLHM---HVMEAERAQGWLTYERDLESAVETYRAAGGAGFRGQLQESLTIHAHFFSRMHAVSPRSTSVWVATGGSVDSVYQGLFREMVDAYRDGDVEVIS----KCEGKMSQLA-----------------AGVTGPEG-YGVDAYCRLGLMDRNGSEVLNR 397
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI) HSP 1 Score: 107 bits (266), Expect = 8.500e-24 Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 3
Query: 669 TTHTVADEMFVDDFALIRDAYRHRQGST--KSHEQTECEVQIAQMAL-------IEELPLVPPVREEIDLSRYPRSEGHFNVSSYCEEALMDRRGSLQLNRRARHAMARQGVPMVDSGVISEGQKWATEKGDGRHFEAIVPLE 1070
T H +ADE+F ++ IR AYR +G+ ++ Q E VQ+ ++ + P + E I +P +G F V +YCEEA++DRRGSLQ++RRAR M+R GVP+VD+ I EGQ WA+ DGRHF +VP+E
Sbjct: 2 TNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYIT---HPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3839.10054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3839.10054.1 >prot_H-paniculata_contig3839.10054.1 ID=prot_H-paniculata_contig3839.10054.1|Name=mRNA_H-paniculata_contig3839.10054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=356bp MRPGSRYVFTRLLISLGWASLCRAESAANIYKGSWWKQFLGSKRGHSWFNback to top mRNA from alignment at H-paniculata_contig3839:4499..10389- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3839.10054.1 ID=mRNA_H-paniculata_contig3839.10054.1|Name=mRNA_H-paniculata_contig3839.10054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5891bp|location=Sequence derived from alignment at H-paniculata_contig3839:4499..10389- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3839:4499..10389- >mRNA_H-paniculata_contig3839.10054.1 ID=mRNA_H-paniculata_contig3839.10054.1|Name=mRNA_H-paniculata_contig3839.10054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at H-paniculata_contig3839:4499..10389- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |