mRNA_H-paniculata_contig3834.10043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3834.10043.1
Unique NamemRNA_H-paniculata_contig3834.10043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: D7FLU2_ECTSI (OTU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU2_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 2.260e-84
Identity = 187/333 (56.16%), Postives = 218/333 (65.47%), Query Frame = 1 
Query:    4 TMEEVKTRHKKELKTLDGACRKMLKQANKNKAKTAEAEKKIIKMEQDIKDRHMKELIAAEGASASTSSETGDKSTIPDAPGDGVGDDSGQAQTN--------------------IGGRVEAVAEGMSVMSIEEREKEKRDQXXXXXXXXXXXXXXXXXXXXX----RIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGHGGPSLRLTYHEHYYALGAHYNSVVPS 930
            +++EVK RHKKE+K LDG  RK++KQANKN                            A  A+A                GDG  DD+ ++                           V+ VA+G+  MS+          XXXXXXXXXXXXXXXXXXXXX    RI KEK EGGPDPRI+EM++L  QVAPRG +VSEIKADGHCLYRAVA+QL +TGRR  LTE+SY LMRQE ARELRSSP++YLPF+DG+EEGEEF+ YC KVEGSAEWGGQ+ELQAL SAL VPMEVFSA SPPLLLG+G+ GP L LTYHEHYYALG+HYNSVVP+
Sbjct:    6 SVDEVKARHKKEIKALDGTGRKLIKQANKNXXXXXXXXXXXXXXXXXXXXXXXXXXEEATEAAA----------------GDGDVDDASESAAKSXXXXXXXXXXXXXXXXXXXXXSEVDGVADGVGAMSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRIAKEKEEGGPDPRIVEMDVLKTQVAPRGFRVSEIKADGHCLYRAVADQLSLTGRRPGLTEESYPLMRQEAARELRSSPSEYLPFLDGLEEGEEFDKYCVKVEGSAEWGGQVELQALCSALRVPMEVFSAMSPPLLLGQGYDGPPLLLTYHEHYYALGSHYNSVVPA 322
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A835Z5X2_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.220e-41
Identity = 84/167 (50.30%), Postives = 116/167 (69.46%), Query Frame = 1 
Query:  457 GPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGR------RSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSP-PLLLGEGHGGPS---LRLTYHEHYYALGAHYNSVVP 927
            GPD R +E+E L A + PRGL V+ I++DG+CLYRAVA QL +          +A  ED +  +R+  A  LR    +++PF++  +EG  +EAYC  VEGSAEWGG++EL+ALS AL VP+EV+SA +  P+++GEG  G +   LR++YH+HYYALG HYNSVVP
Sbjct:  154 GPDARTVELEALSANLLPRGLAVAPIRSDGNCLYRAVAHQLAVAAHGGDGAAAAAAAEDGHAGLRRVAAAHLREHAAEFMPFVEACDEGA-YEAYCALVEGSAEWGGEVELRALSRALRVPIEVWSAAAAQPMVVGEGEEGGAAAPLRVSYHQHYYALGEHYNSVVP 319
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A7S1W3G8_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W3G8_ALECA)

HSP 1 Score: 145 bits (367), Expect = 3.080e-37
Identity = 86/172 (50.00%), Postives = 109/172 (63.37%), Query Frame = 1 
Query:  433 IEKEKREGGPDPRILEMEILGAQVA--PRGLKVSEIKADGHCLYRAVAEQLGITG----RRSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSP-PLLLGEGHGGPSLRLTYHEHYYALGAHYNSVVP 927
            IE+EKRE GP  R LE+  LG Q+A     L+V+E+ ADGHCLYRAV +QL        R     E  +  +R   A+ L   P  Y PF + +++GE+F AYCG+VE S +WGG+LEL+AL+  L V + V  A  P PL LGEG G P L++TYH HYYALG HYNS VP
Sbjct:   20 IEREKREAGPSARALELAALGQQLACCKPPLRVNEVAADGHCLYRAVGDQLRRVRPEAHRWMRPPEQVHEEVRSLCAQSLLKRPDAYSPFAE-LKDGEDFRAYCGRVERSGDWGGELELRALADRLGVRILVHRANEPKPLELGEGKGAP-LQVTYHRHYYALGEHYNSAVP 189
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: W4FCW5_9STRA (OTU domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCW5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.020e-36
Identity = 122/312 (39.10%), Postives = 180/312 (57.69%), Query Frame = 1 
Query:   13 EVKTRHKKELKTLDGACRKMLKQANKNKAKTAEAEKKIIKMEQDIKDRHMKELIAAEGASASTSSETGDKSTIPDAPGDGVGDDSGQAQTNIGGRVEAVAEGMSVMSIEEREKEKRDQXXXXXXXXXXXXXXXXXXXXXRIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMD-----GVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGH---GGPSLRLTYHEHYYALGAHYNSVV 924
            ++K RHK EL+ L    + ++K+  K+     E ++K+ ++EQ +  RH  E+ A                         V DD  +A         A A   +V  + E+   K + XXXXXXXXXXXXXXXXX    RIE E  +     R +E + + AQ+   GL V EI +DGHC+Y AVA+QL +T R    + D+Y+ +RQ+TA  LRS   D++PF++      +   ++FE+YC +VE +A+WGGQ+EL+AL+ ALAVP+EV+SA+S  L++G+ +     P LRL+YH HYY LG H+NS+V
Sbjct:    6 QMKQRHKLELRDLQNQSKILVKKLKKDNLSKKEIDQKVAELEQSVAARHASEVQAIMQKLD-------------------VSDDDAEA---------APATAAAVADVGEKANAKLEXXXXXXXXXXXXXXXXXX----RIEFES-QNVVSQRQIESDAIAAQLTSLGLIVKEIPSDGHCMYHAVADQLKLTRRLPFPSSDAYIPLRQKTAAYLRSHADDFVPFVELDYASDIAIQDQFESYCARVEATADWGGQVELRALAQALAVPIEVYSASSSVLVMGDEYHREDQPPLRLSYHLHYYTLGEHFNSIV 284
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A7S0I6F7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6F7_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 9.850e-36
Identity = 82/169 (48.52%), Postives = 105/169 (62.13%), Query Frame = 1 
Query:  430 RIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGHG--GPSLRLTYHEHYYALGAHYNSVVPS 930
            R+  EK   GP  R LEM  L  Q+ P G +++EI ADGHCLYRAVA+QL   G  S   E+ Y   R+  A  +RS P D++P++    EG +   Y  +VEGS EWGGQLE+ AL+ A    + VFSA +P L+ GE +   GP L L YH+HYY LG HYN+VVPS
Sbjct:   12 RMADEKAGAGPSQRELEMAQLEQQLQPLGRQIAEIAADGHCLYRAVAQQLMQHG--SEGVEEDYSGCRRLAAAYMRSHPGDFMPYV--AAEGMDMGTYTQQVEGSNEWGGQLEITALAHARKRTIAVFSAVAPLLVTGEEYADNGPRLELCYHKHYYGLGEHYNAVVPS 176
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A7S4B021_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B021_CHRCT)

HSP 1 Score: 145 bits (367), Expect = 2.760e-35
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 1 
Query:  430 RIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGHGGPSLRLTYHEHYYALGAHYNSVV 924
            RI +EK   GP  R +E E L A++ P GL V E+ ADGHCLYR+VA+QL  +G  +   +      R+  A  +R+ P D++P++ G       +AYC +VE S+EWGGQLE+ ALS A    + V+SA  PPLL GE + G  L L YH HY+ LG HYNS+V
Sbjct:  206 RIAEEKAASGPSARAVETERLMAKLEPLGLAVQEVPADGHCLYRSVADQLQRSGDAADFQQ-----CRRLAAEYIRTHPDDFMPYLPGEAGATTIDAYCAQVESSSEWGGQLEITALSHACRRCVAVYSADGPPLLTGEQYAGAPLTLAYHRHYFGLGEHYNSLV 365
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A024UJP0_9STRA (OTU domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJP0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.200e-35
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 1 
Query:  469 RILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMD-----GVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGE---GHGGPSLRLTYHEHYYALGAHYNSV 921
            R +E++ +  Q+    L + EI +DGHC+Y AVA+QL +TGR + +T D+YL +RQ+TA  +R+   D+LPF++     GV   ++F++YC +VE S++WGGQLEL+AL+ AL VP+EV+SA+S  L++G+   G     LRL+YH HYY LG H+NS+
Sbjct:  123 RQIEIDAISNQLTSLNLVIKEIPSDGHCMYHAVADQLKLTGRLATVT-DAYLALRQKTAAYMRAHSDDFLPFVELNYDSGVPIQDQFDSYCKRVEESSDWGGQLELRALAQALMVPIEVYSASSAVLVMGDEFLGDCRSPLRLSYHLHYYTLGEHFNSI 280
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BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A4D9CYR4_9STRA (OTU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYR4_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.210e-34
Identity = 133/324 (41.05%), Postives = 182/324 (56.17%), Query Frame = 1 
Query:    4 TMEEVKTRHKKELKTLDGACRKMLKQANKNKAKTAEAEKKIIKMEQDIKDRHMKELIAAEGASASTSSETG-----DKSTIPDAP-------GDGVGDDSGQAQTNIGGRVEAVAEGMSVMSIEEREKEKRDQXXXXXXXXXXXXXXXXXXXXXRIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEE--FEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLG--EGHGGPSLRLTYHEHYYALGAHYNSVVP 927
            T EEV+ RHK E++ L+G  R +LK+A K   K AE + ++ +ME+D+++RH +EL     A     +E G     D   +  AP       G   G + G+ +   GG  E    G +     E+   KRD+ XXXXXXXXXXXXXXXX          +EG    R LEM  + + ++P GL+V E+ ADGHCLYRAVA QL   G    +    Y  +R+  A+ + S P D+LPF+ G EEGE    EAY   VE +AEWGG+LE++AL  A   P+ V++A  P  ++G  +      L L+YH H+YALG HYNSVVP
Sbjct:   18 TEEEVQKRHKAEVRQLEGKTRALLKKAPK--PKKAEVQGEVARMERDMEERHARELGKFAAAPNGGRNEGGNGGGLDSKEVRFAPLTSGSKNGRQEGGE-GRGKEGEGGSEEEEDGGATAA---EKVARKRDKAXXXXXXXXXXXXXXXXARALA-----KEGVISLRDLEMGQILSLLSPLGLRVQEVPADGHCLYRAVAHQLEHQG----IPSQGYPEVRRSAAQHILSHPEDFLPFLAGGEEGEGAGLEAYVHAVEDTAEWGGELEIRALCHAYQTPIRVYAAEQPIYMIGAEDYDQAKPLLLSYHRHFYALGEHYNSVVP 326
[Close]
BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A1V9Y626_9STRA (OTU domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y626_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.090e-33
Identity = 109/316 (34.49%), Postives = 166/316 (52.53%), Query Frame = 1 
Query:   13 EVKTRHKKELKTLDGACRKMLKQANKNKAKTAEAEKKIIKMEQDIKDRHMKELIAAEGASASTSSETGDKSTIPDAPGDGVGDDSGQAQTNIGGRVEAVAEGMSVMSIEEREKEKRDQXXXXXXXXXXXXXXXXXXXXXRIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDS-----YLLMRQETARELRSSPTDYLPFM------DGVEEGEEFEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGHGG-PSLRLTYHEHYYALGAHYNSVV 924
            + K RHK E +      + ++K+  K+K    E E ++ ++E ++KDRH     AAE ++ +TS E              V +++  A  N       +    + +   +R++EK+ Q                     RIE+E +    + ++ E++ +  Q+    + + EI +DGHCLY AVA+QL    RR     D+     Y  MRQ TA  LR+   D+LPF+      D   E ++FEAYC +VE S++WGGQLEL+AL+ +L  P+ VF+A S  L++GE   G P LR++YH HYYALGAHYNSVV
Sbjct:   10 QTKQRHKLEAREWQNQSKLLVKKWKKDKMGKKEIEDELQRLEVEMKDRH-----AAELSAFATSEEE-------------VAENTSSALANT----PEIPTTKAKLEKAQRKREKKKQEGKDRQL--------------RIEEESKNVVSERKV-EVDQISLQLRALSMTIHEIPSDGHCLYHAVADQL----RRIEALPDTGAIPPYKYMRQLTAASLRTHAADFLPFVELNYESDESLEADQFEAYCQRVEQSSDWGGQLELRALAHSLQRPIHVFAAASEVLVMGEEFAGAPPLRVSYHLHYYALGAHYNSVV 284
[Close]
BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Match: A0A7S0L9G8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9G8_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 2.770e-33
Identity = 75/172 (43.60%), Postives = 110/172 (63.95%), Query Frame = 1 
Query:  430 RIEKEKREGGPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSALTEDSYLLMRQETARELRSSPTDYLPFM--DGVEEGEE-FEAYCGKVEGSAEWGGQLELQALSSALAVPMEVFSATSPPLLLGEGH--GGPSLRLTYHEHYYALGAHYNSVVPS 930
            RI +EK   GP  R +EM+ L  ++ P GL+V EI ADGHCLYR++A Q+ + G+       S+   R++ +  +R++P+D+LP++  D  +  E+  + YCG +E S+EWGGQLE+ AL+      + V SA +P LL GE +   GP L+L YH HYY LG HYNS+VP+
Sbjct:  128 RIAEEKAAAGPSARDIEMQKLVVKLMPLGLQVQEIPADGHCLYRSLAHQMQLDGQSGI----SFQHCRRDASAYIRANPSDFLPYLAADAGDASEQSLDKYCGTIEASSEWGGQLEITALAHFHKRCIAVHSADAPVLLTGEDYDANGPRLQLAYHRHYYELGEHYNSLVPA 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3834.10043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLU2_ECTSI2.260e-8456.16OTU domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z5X2_9STRA4.220e-4150.30OTU domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1W3G8_ALECA3.080e-3750.00Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
W4FCW5_9STRA1.020e-3639.10OTU domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A7S0I6F7_9EUKA9.850e-3648.52Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4B021_CHRCT2.760e-3546.06Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A024UJP0_9STRA3.200e-3546.54OTU domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A4D9CYR4_9STRA1.210e-3441.05OTU domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A1V9Y626_9STRA2.090e-3334.49OTU domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A7S0L9G8_9EUKA2.770e-3343.60Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3834contigH-paniculata_contig3834:4127..8664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue8.5e-72
Seed eggNOG ortholog2880.D7FLU2
Preferred nameOTUD6B
KEGG koko:K14015,ko:K18342
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016579,GO:0016787,GO:0017148,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022607,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032268,GO:0032269,GO:0032270,GO:0033554,GO:0034248,GO:0034249,GO:0034250,GO:0034622,GO:0034976,GO:0035523,GO:0035871,GO:0036211,GO:0036459,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043248,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045727,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051603,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1990167,GO:1990168,GO:2000112,GO:2000113
EggNOG free text desc.protein K27-linked deubiquitination
EggNOG OGsCOG5539@1,KOG2606@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons6
Model size1637
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3834.10043.1prot_H-paniculata_contig3834.10043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3834 4831..8658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930178.5100532-UTR-H-paniculata_contig3834:4126..48301622930178.5100532-UTR-H-paniculata_contig3834:4126..4830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3834 4127..4830 -
1691481179.1719549-UTR-H-paniculata_contig3834:4126..48301691481179.1719549-UTR-H-paniculata_contig3834:4126..4830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3834 4127..4830 -
1622930178.6068861-UTR-H-paniculata_contig3834:8658..86641622930178.6068861-UTR-H-paniculata_contig3834:8658..8664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3834 8659..8664 -
1691481179.233633-UTR-H-paniculata_contig3834:8658..86641691481179.233633-UTR-H-paniculata_contig3834:8658..8664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3834 8659..8664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930178.525907-CDS-H-paniculata_contig3834:4830..49891622930178.525907-CDS-H-paniculata_contig3834:4830..4989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 4831..4989 -
1691481179.1828926-CDS-H-paniculata_contig3834:4830..49891691481179.1828926-CDS-H-paniculata_contig3834:4830..4989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 4831..4989 -
1622930178.53904-CDS-H-paniculata_contig3834:5416..55431622930178.53904-CDS-H-paniculata_contig3834:5416..5543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 5417..5543 -
1691481179.1911714-CDS-H-paniculata_contig3834:5416..55431691481179.1911714-CDS-H-paniculata_contig3834:5416..5543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 5417..5543 -
1622930178.5499969-CDS-H-paniculata_contig3834:6564..66971622930178.5499969-CDS-H-paniculata_contig3834:6564..6697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 6565..6697 -
1691481179.198944-CDS-H-paniculata_contig3834:6564..66971691481179.198944-CDS-H-paniculata_contig3834:6564..6697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 6565..6697 -
1622930178.5657086-CDS-H-paniculata_contig3834:6954..70571622930178.5657086-CDS-H-paniculata_contig3834:6954..7057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 6955..7057 -
1691481179.2064958-CDS-H-paniculata_contig3834:6954..70571691481179.2064958-CDS-H-paniculata_contig3834:6954..7057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 6955..7057 -
1622930178.5816593-CDS-H-paniculata_contig3834:7649..79281622930178.5816593-CDS-H-paniculata_contig3834:7649..7928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 7650..7928 -
1691481179.2177026-CDS-H-paniculata_contig3834:7649..79281691481179.2177026-CDS-H-paniculata_contig3834:7649..7928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 7650..7928 -
1622930178.5940235-CDS-H-paniculata_contig3834:8532..86581622930178.5940235-CDS-H-paniculata_contig3834:8532..8658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 8533..8658 -
1691481179.225903-CDS-H-paniculata_contig3834:8532..86581691481179.225903-CDS-H-paniculata_contig3834:8532..8658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3834 8533..8658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3834.10043.1

>prot_H-paniculata_contig3834.10043.1 ID=prot_H-paniculata_contig3834.10043.1|Name=mRNA_H-paniculata_contig3834.10043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MEEVKTRHKKELKTLDGACRKMLKQANKNKAKTAEAEKKIIKMEQDIKDR
HMKELIAAEGASASTSSETGDKSTIPDAPGDGVGDDSGQAQTNIGGRVEA
VAEGMSVMSIEEREKEKRDQKRAKAQRKRERQRNRELEREERIEKEKREG
GPDPRILEMEILGAQVAPRGLKVSEIKADGHCLYRAVAEQLGITGRRSAL
TEDSYLLMRQETARELRSSPTDYLPFMDGVEEGEEFEAYCGKVEGSAEWG
GQLELQALSSALAVPMEVFSATSPPLLLGEGHGGPSLRLTYHEHYYALGA
HYNSVVPS*
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mRNA from alignment at H-paniculata_contig3834:4127..8664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3834.10043.1 ID=mRNA_H-paniculata_contig3834.10043.1|Name=mRNA_H-paniculata_contig3834.10043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4538bp|location=Sequence derived from alignment at H-paniculata_contig3834:4127..8664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACCATGGAGGAGGTGAAGACGAGGCACAAAAAAGAGCTCAAAACTCT
GGATGGCGCATGCAGGAAGATGCTGAAGCAGGCCAACAAAAACAAGGCAA
AGACCGCAGAGGCAGAGAAGAAAATCATAAAGGTGGGCAAGAAAATCGGT
CTCCAGCGACATTACGCATCGCAGGTACTCCTCGTGTATACCTACGGTTG
ATTTTCACCGCATTACAGGTAGCGTGGTCATCCTTTTTATTCCCGATTCT
GGTCTACGTTGACCGTAATGACACTTCCTGGACTGTTCTGTATACCTGCT
GCGCGATAGTAGAGTACTAGGCGCGCCCTGTTTTCCCAGTAGATGGGAAA
TGGCCTACTGTACTGACTGACCTTACGGATAAACGGCGCGTCGGTATTGC
TTTCTTTGCCTTTCAGACCCATGGATGATGCTATCCTACTCTCGTTTGAG
TGTCAACAACACATGTTGGTGTTTCAAACCCTGTTCCAAGCTGCAACAGC
CTTTTAATCCTTCCGAGCTCCAACGTCTTACTAATAGCTTCCCCCCTTAA
AATTGGATCAAGGGTAACATGTGTTTTTGGTTGGTAGAGCTAAACTCCGA
TCGTTTTGTTTGGATTCATCGATGCTATTTTTTGTCGAGTGACTACTAGC
TCGCGATTTGACGCTGCTTTGGCTGGCCTCTAGTCATACCGCTTCCAACG
CACCCCCCACATCCTACAAACCCAACATACCTTTAGATGGAACAGGACAT
CAAGGATAGGCACATGAAGGAGTTGATCGCAGCGGAGGGAGCATCAGCGT
CAACATCGTCAGAAACTGGAGACAAGTCCACAATACCAGACGCTCCCGGT
GACGGTGTTGGTGACGATAGTGGCCAAGCGCAGACTAACATAGGCGGGAG
GGTGGAGGCGGTAGCAGAGGGTATGAGCGTGATGTCTATCGAAGAGCGAG
AGAAGGAAAAACGAGATCAGAAGCGCGCGAAGGCGCAGCGCAAGCGAGAA
AGGCAGCGGAACAGGGTAAGCATTCGGGTGCTCCATTGAGTTAGGCGTAC
AATTACAATTGTATCTCCGCTCATTAATCTTATTTATCCGTGCCCCCAGG
CGAGATGTTGTTGGCATTATTAATAGGATAATAACATTTTTGTTTCGTGG
ATTAATCACACGGAAATCGTGATTTGCAATATGACTCGTGGTCTCACAAT
AGCGGCAACCAGTATCATATAAATTTAGCCCCCTAGCGCGCTGCCTGGCT
CACTCGTGGTCACACTCCCAAATCCGAAAGCTCTTTATGCTTGATTATTT
TGGATCATGATTTGTGTAGTGAAGAGATCCTACATCACCTTCGTGCTGTT
AATTGGGGTTGTTAAGCTCAGGTTGTAGTCGTTTCAGAACCTTTTTTTAG
CTCTGTACTGAACTAGCATGTTATCCGTTCCAGATACTTGATCTGTACTC
ATAATTTGGGTCTTGATCATTGATATTTGAGGTTATTCATGAGAATTGTT
TCTTTGTGCTGTCTATGTGTTCTCCCTGATATTTATTTATTTATGGCAAT
TTTCTGTAGCCCTAATCTTTGTCTTGATCCTTGGTGTTTATATATGTCAT
CATCCAGGAGCTGGAGCGGGAAGAACGCATCGAGAAGGAAAAGCGGGAAG
GTGGACCAGATCCCAGGATATTAGAAATGGAAATATTAGGAGCTCAAGTG
GCTCCAAGAGGTACGATATCGCATACTATGGGCCTGCTACGCTATGTTTC
TCTAATCATACACAATTCGCTTTCATGTCGGCGTGCCTTCCCCGTTGTGT
GCATGTATCATTCCCATTATTTCCAGAGGTATCTACCAGTACCTTCAAAA
TATGTTGTATTTTTCTGTTCCTAATCCTATTTACAATCACCATCTCTAAA
ATTGATGTTACGTGAGGGATGGGGGGTGATAAGACTACTGTATCTGTTAA
CCGTCAATAACCGAAAGGTCTGAAGGTTAGCGAAATAAAGGCGGACGGTC
ACTGTCTTTACCGAGCTGTGGCGGAGCAGCTGGGCATCACGGGACGGCGG
TCTGCCCTTACGGAGGACTCATACCTGCTTATGAGACAAGAAACAGCAAG
GTGTGCGGGGCGCTTTTGTTGCATGTGTGCATGTGCCTTGCCTTCGTGTC
TTGGTCTTTGCCACAGCTTCGCCCCCCCGCGAGCGATTTAATCTATTGCT
TTAGTGTCTTGTGTTTCAATGTTTGGATGTGTCATAACACTACATTGAGT
TGACGTCCATACAACGGTGTCGTAGGATATACCATAATTGAAAGTTAGCC
CTTTGCCCCCCGGTCTTCACGACGTCTCCGCGTGAGCTAATCAGTACTTG
AAATTCCCAGGTGCAAAAAAAGAAGAAATCTTGGACATGACATGATTACG
GGGATAGGAAGCCGTGGTCGTTCAGATCGCCAGTGCAGTGCATGAAAGAT
AGTACATACATGGAGTACAAACGGGGAATTGGTATGATTCTGCGAACAGC
GACTGTAGCGCTCTCCAGACATTATGGTAATGTCAGGTTTACTTGTTGTG
TGGAAGCAGCCTTATTAAACAGCGCCGCAAGAGTTTCACCCCTTGGGGGC
CATGTTTTTTTCCCTACACCTGAATATCACCTGAACGAATCGTTGATGAG
TTACTCATTGCTCTTGATCGTTTTAGAGGGGACAATTCCACCTACACAAT
CGCTTCTAATGCAATTTTCTAGTACAAAACATCATATTACATTGAAAAAC
ATGCCCCAAAAGCAAATCTCAGAAAGACAAAAATTCGAAGTGTGCTGCCT
AAGGGTATGACAAGAACGACGAAATGTTGCCTCATTAAGTATAATCATGG
ATTTGTCAGGCATGAACGAAGTTGTTCTTTCTGTTCGTTATTTTAAATAT
AACATGTGTACACTCCGGAGAGAGCTACGATCAAGTTTCATTCAATGATA
ATTTCCACATTAACCCCTAGTGTGCCACTTGCGGGTGCTTGCTGTGATCT
TTATAGTCATTGTCCCAAGAGTTGAAAGTTCCTGCAGTTAAGATCTCACA
TGAATGGCGCAGAACTAGGGAGAGTTAAAATAAAGTCAATTGGGCCATGT
CTTGAATTTTTAATATGACAGGGAGCTGCGATCGTCGCCGACAGACTACC
TGCCTTTCATGGATGGCGTGGAGGAAGGCGAAGAGTTCGAGGCCTACTGC
GGGAAAGTGGAGGGGAGTGCAGAATGGGGAGGGCAGTTGGAGCTGCAGGT
AAGAGATGATCCCTATTAAATACTACCCTCTCCCTCCGCTGGAAGACTTC
TTAATTTGCCTTTTGATCGCAGAGGTCGGAGCGATTGGTTACTGGCGATC
ACTCTAATGAGAACAATGCTCCGTCCTCTTGGGGGTGCGTGGTCAAGTCT
GTGATAGCTAAGGCATGCATGTAAAACATGTCTACATCCTCCCCCTCAGA
CGACTGATGCCATGCGTATATGCGGTGTTGTCCCGGTAGCTGTGTTACCG
CATGCTCATAGCTCGAATCGATCGTCATAAATGAACCTGCATTACACGAT
CACATGTACAGCGGCCCTAACTGCACAAACCTCGTTTCCCCTCCCTTGAA
TCTCGCACCCATGATTTCCGTTATTGTCATTGTGTATCTCTATCTCAATG
TCTGAACCACATCTTCCACTCGAAGGCCCTGTCGAGTGCTCTAGCCGTAC
CTATGGAGGTGTTTTCTGCTACCTCACCTCCGCTCTTGCTTGGAGAGGGC
CACGGCGGACCTTCATTACGACTCACGTACCACGAACATTACTACGCCCT
GGGCGCTCATTACAACTCCGTCGTTCCATCCTGATGACTACACGTGTAGA
GCAATAGCCGGGTATTAACTCTTAAAATTTACTTCCCGACTCATGTTCAC
TCGTATTCTCGTTTAGTGCCTGCGGCGGGGGGAAAGAGGTTTTTGATGTG
GCAGTTTTCCGTAGATAGTAGTGAACACGTTCGTAAGGTTTTAAGGTTAT
TTTTGACACAGATGCAACTGTTCAAACAAAATAAACGAGTGTGCCTGCTC
GCTTCCATCAAACAGGTGGATAACGGGAACTTCGCCATGTATAGTACTAG
TGGTGTTTCTGATGATGGTATCATTGTGGAGGTAGCAGGTTTCCTAGAGG
CGTGTTAAGAGGCAAAAGGGGGCGGTCAGAAGCAATAGGATGCGTTGAGG
ACGAACAAAAGCCCGCAGATATAGCGTGGGCTGTAATAATCTAAGACGAC
AGTCGCGCTTAGTGTAAACGATCCTCTTTCCAACAACCTACACAACCTCC
TTCGCACGATCAACAATTAACACGTGGGTACGAACCTCTCCACTCCAACC
GTGGGACTGATAGCTATGGGTAAGGCAAGATAGCCACCGTAGTGAGATCA
AAAGGCGCACACTTTCGTCCGGCATCTTTCGATCGAATCACGGCAATTGG
TGGTTCATGTTTATCCTATCCCAGTTCGTTGTTCTTCTTGTACAGTAGAG
AGAGAAGCGATCTGATTGGTCGACGAGGGATCCGTAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3834:4127..8664-

>mRNA_H-paniculata_contig3834.10043.1 ID=mRNA_H-paniculata_contig3834.10043.1|Name=mRNA_H-paniculata_contig3834.10043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig3834:4127..8664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGTGAAGACGAGGCACAAAAAAGAGCTCAAAACTCTGGATGG
CGCATGCAGGAAGATGCTGAAGCAGGCCAACAAAAACAAGGCAAAGACCG
CAGAGGCAGAGAAGAAAATCATAAAGATGGAGGAGGTGAAGACGAGGCAC
AAAAAAGAGCTCAAAACTCTGGATGGCGCATGCAGGAAGATGCTGAAGCA
GGCCAACAAAAACAAGGCAAAGACCGCAGAGGCAGAGAAGAAAATCATAA
AGATGGAACAGGACATCAAGGATAGGCACATGAAGGAGTTGATCGCAGCG
GAGGGAGCATCAGCGTCAACATCGTCAGAAACTGGAGACAAGTCCACAAT
ACCAGACGCTCCCGGTGACGGTGTTGGTGACGATAGTGGCCAAGCGCAGA
CTAACATAGGCGGGAGGGTGGAGGCGGTAGCAGAGGGTATGAGCGTGATG
TCTATCGAAGAGCGAGAGAAGGAAAAACGAGATCAGAAGCGCGCGAAGGC
GCAGCGCAAGCGAGAAAGGCAGCGGAACAGGATGGAACAGGACATCAAGG
ATAGGCACATGAAGGAGTTGATCGCAGCGGAGGGAGCATCAGCGTCAACA
TCGTCAGAAACTGGAGACAAGTCCACAATACCAGACGCTCCCGGTGACGG
TGTTGGTGACGATAGTGGCCAAGCGCAGACTAACATAGGCGGGAGGGTGG
AGGCGGTAGCAGAGGGTATGAGCGTGATGTCTATCGAAGAGCGAGAGAAG
GAAAAACGAGATCAGAAGCGCGCGAAGGCGCAGCGCAAGCGAGAAAGGCA
GCGGAACAGGGAGCTGGAGCGGGAAGAACGCATCGAGAAGGAAAAGCGGG
AAGGTGGACCAGATCCCAGGATATTAGAAATGGAAATATTAGGAGCTCAA
GTGGCTCCAAGAGGAGCTGGAGCGGGAAGAACGCATCGAGAAGGAAAAGC
GGGAAGGTGGACCAGATCCCAGGATATTAGAAATGGAAATATTAGGAGCT
CAAGTGGCTCCAAGAGGTCTGAAGGTTAGCGAAATAAAGGCGGACGGTCA
CTGTCTTTACCGAGCTGTGGCGGAGCAGCTGGGCATCACGGGACGGCGGT
CTGCCCTTACGGAGGACTCATACCTGCTTATGAGACAAGAAACAGCAAGG
TCTGAAGGTTAGCGAAATAAAGGCGGACGGTCACTGTCTTTACCGAGCTG
TGGCGGAGCAGCTGGGCATCACGGGACGGCGGTCTGCCCTTACGGAGGAC
TCATACCTGCTTATGAGACAAGAAACAGCAAGGGAGCTGCGATCGTCGCC
GACAGACTACCTGCCTTTCATGGATGGCGTGGAGGAAGGCGAAGAGTTCG
AGGCCTACTGCGGGAAAGTGGAGGGGAGTGCAGAATGGGGAGGGCAGTTG
GAGCTGCAGGGAGCTGCGATCGTCGCCGACAGACTACCTGCCTTTCATGG
ATGGCGTGGAGGAAGGCGAAGAGTTCGAGGCCTACTGCGGGAAAGTGGAG
GGGAGTGCAGAATGGGGAGGGCAGTTGGAGCTGCAGGCCCTGTCGAGTGC
TCTAGCCGTACCTATGGAGGTGTTTTCTGCTACCTCACCTCCGCTCTTGC
TTGGAGAGGGCCACGGCGGACCTTCATTACGACTCACGTACCACGAACAT
TACTACGCCCTGGGCGCTCATTACAACTCCGTCGTTCCATCCTGAGCCCT
GTCGAGTGCTCTAGCCGTACCTATGGAGGTGTTTTCTGCTACCTCACCTC
CGCTCTTGCTTGGAGAGGGCCACGGCGGACCTTCATTACGACTCACGTAC
CACGAACATTACTACGCCCTGGGCGCTCATTACAACTCCGTCGTTCCATC
CTGA
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