mRNA_H-paniculata_contig3831.10039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3831.10039.1
Unique NamemRNA_H-paniculata_contig3831.10039.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3831.10039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3831contigH-paniculata_contig3831:41..1726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size211
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3831.10039.1prot_H-paniculata_contig3831.10039.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3831 41..1695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930177.8872678-CDS-H-paniculata_contig3831:40..961622930177.8872678-CDS-H-paniculata_contig3831:40..96Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 41..96 -
1691481178.886711-CDS-H-paniculata_contig3831:40..961691481178.886711-CDS-H-paniculata_contig3831:40..96Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 41..96 -
1622930177.9037828-CDS-H-paniculata_contig3831:1054..11561622930177.9037828-CDS-H-paniculata_contig3831:1054..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 1055..1156 -
1691481178.8948355-CDS-H-paniculata_contig3831:1054..11561691481178.8948355-CDS-H-paniculata_contig3831:1054..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 1055..1156 -
1622930177.9194238-CDS-H-paniculata_contig3831:1673..16951622930177.9194238-CDS-H-paniculata_contig3831:1673..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 1674..1695 -
1691481178.9021654-CDS-H-paniculata_contig3831:1673..16951691481178.9021654-CDS-H-paniculata_contig3831:1673..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3831 1674..1695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930177.9403675-UTR-H-paniculata_contig3831:1695..17261622930177.9403675-UTR-H-paniculata_contig3831:1695..1726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3831 1696..1726 -
1691481178.9095914-UTR-H-paniculata_contig3831:1695..17261691481178.9095914-UTR-H-paniculata_contig3831:1695..1726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3831 1696..1726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3831.10039.1

>prot_H-paniculata_contig3831.10039.1 ID=prot_H-paniculata_contig3831.10039.1|Name=mRNA_H-paniculata_contig3831.10039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MDRKVLGGKASDAFMSNPSLMYRGFEDVQKEMRRDYITTYGRRQPERRDA
VRGTTQRCS*
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mRNA from alignment at H-paniculata_contig3831:41..1726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3831.10039.1 ID=mRNA_H-paniculata_contig3831.10039.1|Name=mRNA_H-paniculata_contig3831.10039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig3831:41..1726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTACTCGTGATGGACGGTCTTGTCAGACTATGGACCGGAAAGTGTTGG
GAGGTGAGCATTAGAACCGTAACACTACTTCGAAGAGTTCGAGGGGACAT
TTCGTTACGTTGTGTAATGTTGAGGAGACAATATGAGTTTGGGCGACCTC
GTGAGAAACCTTTCGTGTTGCCTAGTTCACTGTCGCTGTCGTTTCTAAAG
AATACATTCTCTTCGGTCTGCAGACTGCCGAAATATCGAATAATGGCCTT
CATTTTGGTTGATGCTTTCTTTTCGAGGAAAGCAAAACAACAATCCAACA
GGATCAACCCATAACATGATGTAACGACTAGCAATAGAAGACAATGTGCT
GTAGTAGGGTGTTCTTTGCTGGCCTCTTCGCTGCTGCCTTCGACTGCTAT
CGCTTCACAGAACAGCTGGTGCGCTCAAACCCATAGCGCTTTAGTGTGAC
GCTCCGAAGCTGCGGTGCACTGTACAAACAGTACAATTGTGCTTAATTCT
TAACATCTACCGTGTATAGCAGTAGCTTAGCATCCTTTCCGCTTCGCGTC
CACCATGTGCGTGCAAGCAGGGAAAGCTTCCGACGCGTTCATGTCAAATC
CCTCGTTAATGTATCGAGGCTTCGAGGACGTGCAGAAGGAGATGAGGAGG
GATTACATTACGACTTACGGACGTGAGTGGATGGGATGAATTGTGGAATG
CCATAGAAGATTTCAGTCAGTGTAAAACGGAATGTGAACGATGCATTCGG
GACAAGGACAAACGAAGCGTCAGGCAACTTCTTACGGCATCACTTGTGGC
AAGAAGCGATATTTGAAGACATAATCAAAACCCACTCGGCAGCATGCGCC
ATGATTCATCCACTGTCACCGGCATAATGTGTCAACAACGACCAGGAAAT
TCGTTCTGTTGCTGTACTCCGGTACTGCTGCTGTGGGGGAGCACGCTGTG
GGGCTGTCTGTTGTGTGCGAAGGGACTATCTGCACCACAAATGCTAGTGC
ATGAGTCACGCTCCGCCATTCCAAAAAATAAAACTATTCCAAAACGCGCA
TTGAACTATTGGCAAGAATAGAAGGTCGTGGGGTTCGATTTTGGGCTCGT
GGGATTAGAAAAAAGTCGAAGGCAAAACTTCCTACAAGAAGTGGTTTCGA
GGAATAGGTAATCGTTTCTTTTTAGAACCCAAAATCAAGCTGAAGAATCC
CAACTGCCACAAGAAACGGGGTCAACGCAATCGGAAAAAGCAGCTTTCTC
TTGACGCGCAAAGTGCTGCAACGCGTGCCGCGTTAGCAACAAGGCATGAT
AGGGTTGCACATTCAGATCAGGCACGGTATCGGCCCCAAAGAAACGCACA
GGATGGGGTTCGGCCCGGTAGTACCGTCCGCGAAAATATTTGGTAGTACA
TATCGCCGGGAAACATTCCACGGCCAGTACCGACCGTGTTGCACAGTAGC
TGCATACCGCACGAAATTAAGTCTCGTGATAAAACGTCGGTGTGACTGCA
GGTTATGGACTCGTCGTGACGTAGAAATCGCTACTCCACGGGAGAAATCA
AGAGGGCAAACGAGCAGCACAGAAATGATGATTTTCTCCCTCGATCTTTT
GCTGATAACGTTCACGTCTTCGTCCCATAGGAAGACAACCCGAACGACGA
GATGCTGTCCGGGGAACAACACAGCGATGTTCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3831:41..1726-

>mRNA_H-paniculata_contig3831.10039.1 ID=mRNA_H-paniculata_contig3831.10039.1|Name=mRNA_H-paniculata_contig3831.10039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig3831:41..1726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGGAAAGTGTTGGGAGATGGACCGGAAAGTGTTGGGAGGGAAAG
CTTCCGACGCGTTCATGTCAAATCCCTCGTTAATGTATCGAGGCTTCGAG
GACGTGCAGAAGGAGATGAGGAGGGATTACATTACGACTTACGGACGGAA
AGCTTCCGACGCGTTCATGTCAAATCCCTCGTTAATGTATCGAGGCTTCG
AGGACGTGCAGAAGGAGATGAGGAGGGATTACATTACGACTTACGGACGA
AGACAACCCGAACGACGAGATGCTGTCCGGGGAACAACACAGCGATGTTC
TTAAGAAGACAACCCGAACGACGAGATGCTGTCCGGGGAACAACACAGCG
ATGTTCTTAA
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