mRNA_H-paniculata_contig3830.10038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3830.10038.1
Unique NamemRNA_H-paniculata_contig3830.10038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3830.10038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3830contigH-paniculata_contig3830:12437..15722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930177.5651617-CDS-H-paniculata_contig3830:12436..125261622930177.5651617-CDS-H-paniculata_contig3830:12436..12526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 12437..12526 +
1691481178.7663863-CDS-H-paniculata_contig3830:12436..125261691481178.7663863-CDS-H-paniculata_contig3830:12436..12526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 12437..12526 +
1622930177.5808623-CDS-H-paniculata_contig3830:15605..157221622930177.5808623-CDS-H-paniculata_contig3830:15605..15722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 15606..15722 +
1691481178.7766075-CDS-H-paniculata_contig3830:15605..157221691481178.7766075-CDS-H-paniculata_contig3830:15605..15722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 15606..15722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3830.10038.1prot_H-paniculata_contig3830.10038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3830 12437..15722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3830.10038.1

>prot_H-paniculata_contig3830.10038.1 ID=prot_H-paniculata_contig3830.10038.1|Name=mRNA_H-paniculata_contig3830.10038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
RLIAGGLIAGGMCGLWGSARLLVGTMVLAQIFFRVSPYRTARPRDTAWRR
GTAPHGQSLHSSLALHIYR
back to top

mRNA from alignment at H-paniculata_contig3830:12437..15722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3830.10038.1 ID=mRNA_H-paniculata_contig3830.10038.1|Name=mRNA_H-paniculata_contig3830.10038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3286bp|location=Sequence derived from alignment at H-paniculata_contig3830:12437..15722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTTGATTGCTGGAGGATTGATTGCTGGAGGCATGTGTGGGCTTTGGGG
AAGTGCACGGCTGCTGGTCGGGACAATGGTCTTGGCTCAGGTATTCCATG
TACCCCTCTACGGTGCTGAAGGTGCCGTCGACTTGCCCTCCGATTTCGTT
CTCGCCGGCTTCCGGAACGATGCTAATAGAGATCGTGACCTATTCTTTGA
CACCTATAATGTGCATATGTGCACATAACACATGAACAATTGTCATCGTC
TGTAGCAGGCCTGTGTGAGTAATTTTACACCAAGATATGTGTAACATGTG
GGTCACGGCTAGCTCCGTAAGTGCAGACCTCACCTTGAGGAAGTAGTTTT
CTCTGACTTTCTACGCTGTATTTGTCACTGTCACTTGGAAAATCTTACTG
GAAACTGAAGCACGGCCTTCATCCTTCTTTCTAGTAATGGAGACAAGACA
CGATGACACGACCCGGCTCCTTCTTCGCTCCTGCTGCTATTACTGCTGCA
AAGCATCCACTCCAAGCTCCATCTAAGGAATATCTTCCTGCATTTCCCTC
CCTCCATACCCAGGCTGCCGCCGCGCGTTTGGAGCTATTGCGTGGGTGTT
CTAGTTATTGTCACCATGGCGAAAGTAGTTCTTCCAATATCTGCGGCTCC
CTCATGTATGGAAGGGTTCATGCCTCCTTGTTTCACATAGATTTATACTG
CACTACTGCTATTGTACCAAGGCTCTACCGACTGTAATTCACTTATCGAT
TCCTTCCATTTTGCAGCACAATTTTCTGGACGGCGGATATGCATGCCCTA
TCCACCCCAATCATGTGATCCGTCTGTTGCAGGTCCGTCTGTTCAAATTA
CTCTTGAAAAACAGTTAGCATAGAGAGTGCGAATTACACCTTTGTTCCGA
TTTGACCTTACACAGTGAGACAGGCGTCACTGCCCTGACTGAATTCTGTC
TCTGTACAAGTGTACAAGAGGGTCTTAAGATGATTGACCCGCAATGATTC
CCTCCAGACCACACTGCAGTATATACTGTATATGTATGTATGCTCGGTTG
CCCCGCACATAGACTAAGGCCGTATTAATCTGCGATAGAAAAATTGGGCT
TTCAGGGTCACGTGCAGGCACGGCCTCACTGTCTAGCTTTCTCAAAAATC
AAGAAGTCAATAATTCCTCAGGGCCTTTGCTGAAAGAACGCTCCGGAATA
GAGTAAGAAATGAAACAAAAAGAGAAGAGTTTCCTCTCTAATTCGTCACA
ATGTACCAGTTTTAGCCATCACGGGTCGCCTCACCGCTATCATGCAGGTT
GAATCCTTCTAAACAAGTTTCCTCTACCAATCACGGGAGGAATATTGCAT
TTTTGCAACGGGACCAAACGATGGAAGTCTTTCGTTTTTTCGTGCTCGAT
AATACACAGCCTCAGCAACAGGTCAAACCCGACGTGGCGAAAGAAGCCTT
GGTTTTCAACTGTTTCAGTCGACAGGTAAAAGCTCCTTCATATATAGTTT
CTTGACTGCTACCGCTAACTTTACAGCAGGAGCTATATCGTACATACGAA
AAAAAAAAGAAGCAAACTAGGAAGATTTTTACTTCTTATATGTGTGGAAA
TATTCATATTCTGCTTCGTTGTTGAGAAGTATCTAAATGGGAGACCGTCG
GGAATTAAAATCACTCCCGATTCTGAGCGCGGTCACAATATTATTAACTC
ACTCTAGCAGGTGAACCTCGTTTTACAGGACACTAATCGAGACGACCTTT
TGTTGGTACCCTGCGCTCCAACTCTCTGGCATAAGAAGTGCTCAAGTTTC
AAACGAAGAAAAGAAGACTGGACGTCCCGGTTCTTCCTGCAACGCGACGA
AACTCAACGTTCAACTATATGACCGCTCAGAACCGATGGCCAATAATTCC
AGCACATTCATGTGTGTCTCAATCTGGCATACTTGCAGAAGTTGTGCAAA
GTATTGACAACCTAACTACCTAGAGGAACATGGGTACATAAATGACAGCA
TTTGGCCCTTGATGCACAACCATGCTCGTGTGCGTGTATTCCCGTTCGTT
TTCATTTTTCATTTGAACCAACCTTGACTTCCATTCCAACCGAACTTGTA
GATCCTAATTACTTTTTAGGGATAAAACGAAAAACATCTCGATTGTGTGA
CGTGGAAGCTTGGTCCAATCTAAAGTGCGCTTCTTTTGCGAGCATTTTGT
ATTCATTTATTTTTTCATCTGGATTGTTTTTTATAAGACACAGCCTCATG
TGCGCAACGCGCCCGAGAGTCCAGATGTGCAACTCTCCATCGGCTTCTCC
GCGTTCATCTTTCTCGCGACGACCTACCTCTGTTTACGACAAACACAAGA
GTGGAACGTGGACTTCAAGATAGCCAGACATACAGACACGAGTAAGGAAC
ACGAAATGCACCCCCCGTCGTGTGGTAGCAATGCCGTTAGAAGGCGGCCC
TTGAGTATAATCTGCTGCGAGCAATCTGTTTTTTCTGCTGCCGAGCGCGA
TCCATGCCGCCCCTTGAAAACACTGTGTTTTTCGTTCGTTTCGTTCATAC
GTATGTGTTGTTCGCCACTCACGTGGAGTGCCCATCACAACATGACGATA
TATGTGTCTCATGAGTAGCTGTCTACAATTCGACGACCTTCCTTGGGCTC
TCGTCCCAGTGAACTCCCCCCCCCCCCCCCCATCACTGTGAGCCCTGCTG
GCTCTGGCATAATTTCTGGTGTGTTTTCACAACCATCGCTTGAACTATCC
CAAAAGCATCAGTCAAACAATCGAGCCTTGAGCAAGCTCATGTTTCGAGA
TCATGCAGCACTGTTTGAAGTTCTTCTGGAAGTTGAAGCAGACAGGTTAT
CAAGCGACTTCTGAGGTTCGTTACCGAGTGTCACGTGTGAGTGAGACCTT
GTTTTTCGACGTAAGAGTATGTTATTCTTTGTTTCTGTCCGGACCCGGTA
CCGTCGCAACCCCACTGATCGCACAAGCAGCGACCGGCATATTTTTCTAT
ACGCACCGGGTGCGTCATCGTGCGCCCCCCCCCCAGGTCAGGCCTGCTTG
ACCCATTGATGAATGACCACCACCCTGAAAAAATGATTTCGCACCTTTTG
CTTTGGTCCTCAAGGCAATGTTGTTAACGAATATGCGCTTGTGATCACCC
TCACGTTTGTTGTATCCAGATATTTTTTCGAGTCAGCCCGTACAGGACCG
CAAGGCCGCGAGACACAGCTTGGCGGCGTGGTACGGCACCGCATGGTCAG
AGCCTCCATTCTTCTCTCGCCTTACACATTTATAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3830:12437..15722+

>mRNA_H-paniculata_contig3830.10038.1 ID=mRNA_H-paniculata_contig3830.10038.1|Name=mRNA_H-paniculata_contig3830.10038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig3830:12437..15722+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTTGATTGCTGGAGGATTGATTGCTGGAGGCATGTGTGGGCTTTGGGG
AAGTGCACGGCTGCTGGTCGGGACAATGGTCTTGGCTCAGCGTTTGATTG
CTGGAGGATTGATTGCTGGAGGCATGTGTGGGCTTTGGGGAAGTGCACGG
CTGCTGGTCGGGACAATGGTCTTGGCTCAGATATTTTTTCGAGTCAGCCC
GTACAGGACCGCAAGGCCGCGAGACACAGCTTGGCGGCGTGGTACGGCAC
CGCATGGTCAGAGCCTCCATTCTTCTCTCGCCTTACACATTTATAGGATA
TTTTTTCGAGTCAGCCCGTACAGGACCGCAAGGCCGCGAGACACAGCTTG
GCGGCGTGGTACGGCACCGCATGGTCAGAGCCTCCATTCTTCTCTCGCCT
TACACATTTATAGG
back to top