mRNA_H-paniculata_contig3830.10037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3830.10037.1
Unique NamemRNA_H-paniculata_contig3830.10037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: D8LH30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH30_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.740e-53
Identity = 106/166 (63.86%), Postives = 123/166 (74.10%), Query Frame = 1 
Query:    1 GGMVRLGPQAERNSEWVNRAGEVNAPTEREALVVDALADKRLYEQELGRMRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQ--------EMVGEDC-----LPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENE 459
            GG+ RLGPQAER+S W+NR G +  PTEREALVVDALADKRLYEQEL R R+ENAFL+DQVRRVSAELKR+Q+R+P+ AA  A                    E+ G+D      LPPWVTSSEVMSPLLAAYDARIQDLEGQV+ Q++ M ELA RT QLV+EN+
Sbjct:  141 GGIPRLGPQAERSSAWINREGGLQPPTEREALVVDALADKRLYEQELARTREENAFLQDQVRRVSAELKRYQVRFPRAAADAAAXXXXXXXXXXXXXXXXXXGEVSGQDAADDVPLPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEEND 306
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A6H5JIX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX0_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.830e-51
Identity = 106/172 (61.63%), Postives = 125/172 (72.67%), Query Frame = 1 
Query:    1 GGMVRLGPQAERNSEWVNRAGEVNAPTEREALVVDALADKRLYEQELGRMRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKA----------GGRQEMVGEDC-----LPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENEQASY 471
            GG+ RLGPQAER+S W+NR G +  PTEREALVVDALADKRLYEQEL R R+ENAFL+DQVRRVSAELKR+Q+R+P+ AA  A                  GG  E+ G D      LPPWVTSSEVMSPLLAAYDARIQDLE Q + Q++ + ELA RT+QLV+EN+ A +
Sbjct:   15 GGIPRLGPQAERSSAWINREGGLQPPTEREALVVDALADKRLYEQELARTREENAFLQDQVRRVSAELKRYQVRFPRAAADAAAXXXXXXXXXXXXXXXXXGG--EVSGPDAADDVPLPPWVTSSEVMSPLLAAYDARIQDLERQNAAQRDGIEELAGRTRQLVEENDTAKH 184
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A836CEA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA8_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.020e-38
Identity = 77/149 (51.68%), Postives = 106/149 (71.14%), Query Frame = 1 
Query:   13 RLGPQAERNSEWVNRAGEVNAPTEREALVVDALADKRLYEQELGRMRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENE 459
            ++GPQAERN +W NR+GE+  P +REAL+V+++AD+RLYEQEL R+R +  F+EDQ++R S EL+ +Q++YPQ AA +          GR ++  +  +P WV S+EVMSPLLAAYD RIQDLEG V  Q+  +  L  RT+ LV ENE
Sbjct:   27 QVGPQAERNMQWSNRSGELPPPPQREALMVESMADRRLYEQELARLRADAKFMEDQLQRTSKELRVYQLKYPQAAARI----------GRADLDAQPDVPGWVASAEVMSPLLAAYDGRIQDLEGLVESQRGELAALTERTEALVAENE 165
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A8J6CAH0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAH0_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 5.120e-9
Identity = 41/104 (39.42%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:  148 MRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENE 459
            MR EN FL DQVRR++ EL R Q+                      E  G   LPPW+ S E +SPL+AAYD RI +LE   +  +E  G       +LV ENE
Sbjct:    1 MRDENEFLRDQVRRLTLELGRQQVGLSSVP----------------EYAGVGTLPPWMASPEHVSPLMAAYDRRIAELESTCASLREDNGRFQPEVSRLVAENE 88
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: UPI0009E33F03 (sodium channel and clathrin linker 1-like isoform X1 n=3 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E33F03)

HSP 1 Score: 63.5 bits (153), Expect = 9.390e-9
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:  166 FLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDEN 456
            FL+DQVRR++A L+ +Q +Y        +G +P              LPPW+T+S ++SPLLA YD  I+  + QVS  KE +  L  +T  +V EN
Sbjct:   13 FLQDQVRRLNAVLEEYQKKYLPVKEPDVKGTEP--------------LPPWITNSSILSPLLAEYDNNIRVSQEQVSFLKEELSSLKQKTDHVVQEN 95
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A2B4S7R0_STYPI (Sodium channel and clathrin linker 1 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4S7R0_STYPI)

HSP 1 Score: 61.2 bits (147), Expect = 5.930e-8
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:  166 FLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDEN 456
            FL+DQVRR++A L+ +Q +Y            P K     ++ G + LPPW+T+S ++SPLLA YD  I+  + Q    KE +  L  +T  +V EN
Sbjct:   13 FLQDQVRRLNAVLEEYQKKY-----------LPVK---EPDVTGAEPLPPWITNSSILSPLLAEYDNNIKSSQEQALFLKEELSSLKQKTDHVVQEN 95
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A3M6UQ58_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UQ58_POCDA)

HSP 1 Score: 60.8 bits (146), Expect = 7.590e-8
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  166 FLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDEN 456
            FL+DQVRR++A L+ +Q +Y        +G++P              LPPW+T+S ++SPLL  YD  I+  + Q    KE +  L  +T  +V EN
Sbjct:   13 FLQDQVRRLNAVLEEYQNKYLPVKEPEVKGKEP--------------LPPWITNSSILSPLLVEYDNNIKSSQEQALFLKEELSSLKQKTDHVVQEN 95
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A1W0A022_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A022_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.760e-7
Identity = 44/159 (27.67%), Postives = 81/159 (50.94%), Query Frame = 1 
Query:   19 GPQAERNSEWVNRAGEVNAPT-----EREALV-VDALADKRLYEQELGRMRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENEQASYIL 477
            GPQ ER+   ++     + P      ER+ +V VD  A +  Y+++L    +E  FL+  V R+  +L+R  +++ +    + +   P      +++   D  PPW TS E MSPL AAY++RI++LE      K+ +    ++ + +  +NE+  + L
Sbjct:    9 GPQEERSKRLLHHTSIFDRPLPPLSKERDFVVPVDFRAQEEAYQEKLASQTEEIVFLKKYVERILNQLRRVLVKHNELEQ-LQQLCDPIALQSTEQV---DSSPPWFTSKEYMSPLFAAYESRIKELELNCDKYKKDLEVFLTQAETMTKDNERLQHEL 163
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: A0A485KYX0_9STRA (Aste57867_12932 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYX0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.780e-7
Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:   19 GPQAERNSEWVNRAGEVNAPT--EREALV-VDALADKRLYEQELGRMRKENAFLEDQVRRVSAELKRHQIRYP-----QTAAGVAEGR-KPAKAGGRQEMVGEDCLPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENE 459
            GPQ ER+        +   PT  ERE +V VD    +  Y++++     E AFL+  + R+  +L+R  I++      QT       +  PA      +  G    PPW +S E MSPL AAY++RI++LE      ++ M    ++   L  EN+
Sbjct:    5 GPQEERSKRLFREPADAPFPTTKEREFVVPVDFRVQEETYQEKVSAQNDEIAFLKSYIERILNQLRRVLIKHDELDQLQTLCDPTRAQFNPADDDDDGD--GSLASPPWFSSKEYMSPLFAAYESRIKELETTCEKTRKDMDSFVAQASHLATEND 158
[Close]
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Match: U6MAY0_EIMMA (Non-muscle myosin II heavy chain, putative n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6MAY0_EIMMA)

HSP 1 Score: 58.5 bits (140), Expect = 5.010e-7
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:  133 QELGRMRKENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEG-RKPAKAGGRQEMVGEDC----LPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDENEQ 462
            Q+L R+++ENA L D   RV+ EL+  ++     AA VA G   P+ A      + +      LPPW  + +++SPLLAAYD RI +L+ +   +++ +   ++R   +  ENEQ
Sbjct:   41 QQLVRLQQENASLRDYAERVTKELRSARLSQAVAAAAVAAGGNAPSAASAMATQLQQQAETLPLPPWCLNMQLVSPLLAAYDERILELQEESREKEKVIEGFSARVAGVTRENEQ 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3830.10037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LH30_ECTSI1.740e-5363.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX0_9PHAE1.830e-5161.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEA8_9STRA2.020e-3851.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J6CAH0_DIALT5.120e-939.42Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
UPI0009E33F039.390e-938.14sodium channel and clathrin linker 1-like isoform ... [more]
A0A2B4S7R0_STYPI5.930e-837.11Sodium channel and clathrin linker 1 n=4 Tax=Pocil... [more]
A0A3M6UQ58_POCDA7.590e-835.05Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A1W0A022_9STRA3.760e-727.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485KYX0_9STRA3.780e-730.13Aste57867_12932 protein n=1 Tax=Aphanomyces stella... [more]
U6MAY0_EIMMA5.010e-733.91Non-muscle myosin II heavy chain, putative n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3830contigH-paniculata_contig3830:4966..11977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue4.5e-45
Seed eggNOG ortholog2880.D8LH30
KEGG koko:K10352
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
EggNOG OGs28NW5@1,2QVG8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Exons4
Model size480
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3830.10037.1prot_H-paniculata_contig3830.10037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3830 4966..11971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930177.761672-CDS-H-paniculata_contig3830:4965..50701622930177.761672-CDS-H-paniculata_contig3830:4965..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 4966..5070 -
1691481178.8332212-CDS-H-paniculata_contig3830:4965..50701691481178.8332212-CDS-H-paniculata_contig3830:4965..5070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 4966..5070 -
1622930177.7753565-CDS-H-paniculata_contig3830:7609..78041622930177.7753565-CDS-H-paniculata_contig3830:7609..7804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 7610..7804 -
1691481178.8449628-CDS-H-paniculata_contig3830:7609..78041691481178.8449628-CDS-H-paniculata_contig3830:7609..7804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 7610..7804 -
1622930177.7866802-CDS-H-paniculata_contig3830:8553..86431622930177.7866802-CDS-H-paniculata_contig3830:8553..8643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 8554..8643 -
1691481178.854441-CDS-H-paniculata_contig3830:8553..86431691481178.854441-CDS-H-paniculata_contig3830:8553..8643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 8554..8643 -
1622930177.8141668-CDS-H-paniculata_contig3830:11887..119711622930177.8141668-CDS-H-paniculata_contig3830:11887..11971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 11888..11971 -
1691481178.8640475-CDS-H-paniculata_contig3830:11887..119711691481178.8640475-CDS-H-paniculata_contig3830:11887..11971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3830 11888..11971 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930177.8346148-UTR-H-paniculata_contig3830:11971..119771622930177.8346148-UTR-H-paniculata_contig3830:11971..11977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3830 11972..11977 -
1691481178.8741767-UTR-H-paniculata_contig3830:11971..119771691481178.8741767-UTR-H-paniculata_contig3830:11971..11977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3830 11972..11977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3830.10037.1

>prot_H-paniculata_contig3830.10037.1 ID=prot_H-paniculata_contig3830.10037.1|Name=mRNA_H-paniculata_contig3830.10037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MVRLGPQAERNSEWVNRAGEVNAPTEREALVVDALADKRLYEQELGRMRK
ENAFLEDQVRRVSAELKRHQIRYPQTAAGVAEGRKPAKAGGRQEMVGEDC
LPPWVTSSEVMSPLLAAYDARIQDLEGQVSGQKESMGELASRTQQLVDEN
EQASYIL*
back to top

mRNA from alignment at H-paniculata_contig3830:4966..11977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3830.10037.1 ID=mRNA_H-paniculata_contig3830.10037.1|Name=mRNA_H-paniculata_contig3830.10037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7012bp|location=Sequence derived from alignment at H-paniculata_contig3830:4966..11977- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGATGGTCCGTCTGGGGCCCCAGGCAGAGCGGAATAGCGAGTGGGT
TAATCGTGCTGGCGAGGTCAATGCCCCCACGGAGCGCGAGGTGATTTGCC
TGAAATACTATTAATGCAACTGCCTTCAGAAGACACTACTGTAATCAATA
CCAGCTATTTGAAGACTCCCATACCTCGTTGTGCAGCTAAGGTCGTCGCC
AATTGAATTTCGAGTGCACACATAATGATCCTGCCCCTGCCGTGCAGCTG
ATGATGTAATGAGTACTATAGTATATGCTCCCATCCAAACCGTTCACCGT
TAGTCTTCTTGTCCCCGCTGCTGTTGTGTTCAACAGCAGTATCGAATATG
GAAAGTTAATCACCCGCGTACCCAGCATCTTGTACACGCAATACACCGTT
ATCATATCTAGGTACATGTATCCGGGTCTTACTCATCATTCATATCGAAC
GGACAAGACATGGCGTAACCAACCCCGATCCTGTATGATGGCCAAGTACT
GAAGGATTTTGGGGACTCGAGCTTTCCACGATGTAGTCGGAGCCAGCGCC
AAGCATGGCTAAGAAGGTTCAAAGACTTGCTTATTGCCGACTACTGTGGT
TGTCTGTCTTCAATCGTTCAGTGAAAAACGCAGGCAGTTGTCCCATGTGT
CGCACACAAGTCGCTGCCACTCTTTCCTTGCAGAGACGAATTACTTGGAG
CGACCAGCGGATCGGAGCAAGTTGTAGATGTTTCACACACGCACAACAAC
ATTTCCAGGATGATACACACAACTGACAAAATATGCGTGCTCACAAAAAT
ACGCCAAGTAGTACACCACAAGTTTTACATACACCTGTGTTGAGGCAATC
ATCGACATCCAGAGTTTTTGTTTGATACACACGCTTGAACCGCAGGCAAG
ATGATGATGGTAGAGGCGGTAGCCGTTTTGGATTAATTTTTCAACTCTTT
ACTCCAGTAACATCTCAAAAGGAATCTTGAGGAATATTGTGTCTATATGC
GAGCGAAGCGAGCCGTTGTGCGTGGTTCACGGAATTCATATAATCACTGG
TTGAGCACGAGAATAAAGCACGGACTGCACGGACATCGACGTCGAAGGGA
GTTGGTGCATTTTTGATTACCATCTCTCTGTTTCTATGTTTCTTCTATAA
GAGTAGAAGTACCGAGAAAGGAATCCGCTATCATCTGGCGATTGAAACGG
GGATAATCTCGCTTCTTTGACTGTGGAATTTACCCGATAGGCAGGGGGAT
GGGGATATTTTTAGTGCGAGCAACAAATCATGAGACTGCCCGTTAAGTGG
CACCACTGTTTTTTCATGTTGCTTATCTGGGAGAGATTGGCTTGAAATTA
ATCGGGAATGGGAGAAGGGCAGTTTTTGGTGCAAGCAATAAATCGTGAGA
ATGCCGATTGAACGATGCCATAAGGGGCAGAGGCGGTAGCAGCTAGAGCT
GGAAGACTGCATACCTTCCAGCGAGGTCATTGGAATCTTGTGCCGGTTTG
ACCAGAACCAGCGTGTGTGTCTTTGACGGTTTCGCTTGGTTATGTATCGG
TTGGGATGATTCCGGGTATGAGAAGGGCACACTGCAGTTTGTGTAGGAAC
TATAATATGTAGCCAAAATTCTTGCGCGACTGACCCCAATTACGCTTGGG
ATGCACGAAAGTTTGGGTTAGGCTACGATAGAGAACTGAGAGAGCTAATA
AACGTGAGTCTTCGAAGATAACTGAAAATAATCATACACGTGTGAATGAT
ACCTCTGGAGGTATTAGTAACCTCTTCATAATGGGACGGCGGTTTTTTCT
TAGTACAGTCATCCTCGCTTTAACGATACTCTGGTTGAGGATAAATCCCC
GCTTTAAGGAAAATAAAGTCCAGACTCGACCAAGTTCGAAACAGTTCGGG
CAAATTGCACATAGCGTCTCCGGAGATAGCAATACCATCATTTCTATGTG
TCTTGCTCCCATCCGTACACACGGCGCATCGCAAACATATACAGCACCCA
CAGACGCTGCTGCTCACTGCTGTATCAAAGAATATGGCGATATTTGGGGG
AGGCGTGGTGTTAAGATGGAACAAGGGGTTCCGGAAGTTTGTATTTCACA
TGGAGGACTGGCTCTGCTGTAGGATTCTTCATGTCCCAGTATGACGCTCT
ACCATGCGGTATCACTTGTCTGTTGTTGGCGTGGAGGGTCAAGTTGGCAC
TGTGTTTGTCCTCCTCATGCACACTGTATGTACCATCTTGTGCCCAATAT
TTGTCCTCCCGTGCTGATCATTTGCAGGATAGCACTAACTTTAGCATTGA
ATTCAGAAAATCTTCAACCAGCACAACGACAGCAATATCCATTTCTCCCA
AACGATGTGGAAGTCATATCCGTTAATTTTTCCTTTCGTACTTGTTGCCT
ACTGGCATCTTTTGTGTGCGATAAGGCCCTGTACCGCGTGTCCTAGGTCG
TCATTTTGCCAAAGTATAGTGCCATCCTCGTTACTCGTAACATGGACTAG
TATGCTCGACCGTCAATGCAGTACAATCGAACACCAATCCTGTGTTGTAG
CAAATCAAGGCCGAAGCCATAATTTCTTTTCCTTTATTTTTCTTTAGCGC
ATTACCCTTGCCGAGACGTGATGACTGCCTGATAGAACACCTACATTGGA
CCCGGGGATGACGAGTTATCACGTCCATTCGCTTAAGGACATTTGGACGA
TGCCCAAGTGGCTAGGAACAAACTTTCGACGGCCCCAATAGTTGTAAAAA
AATAGGAGGTTAGACAATACTTGAAGGTGAACTAACTTGCATTTCTGATT
GTAGCAGACGTTAACTGAATAGTATTATGCGGACGAAATTGTCGGTGAGG
ATTGCTTTTTGCTCCCGATTCAGATCAGTGATTTTAGAAAACTACTTTTT
GTCGGCCAAATCGGTCGATTCTGACCAACCTCATTTGAGGTCGACCAGTT
TTGACAGTTCATGTGACTAAATCTGGTGAAAAGTTGGCCTGGGTTCGTGT
CCGAATCAAGCCTCAGTATTGCTTGTTAAATGAGCAATGGCTGTTTCAGT
ATGCACGTGTCTGGGTGGCGCTACCTCTTCACAATATGTTGCACACACAG
CTCCATCCACGAAGATACAAGTAGACGCGTGCCGTACAACACTGCTCAAA
GTTACCACGCACGCTGATTCAGCATCATCCAATGATGGGCCGATGGCCTC
AACTAAAGACAACAGTGCTGCACCTAGAGGGTCTAGACTGACTGCACTAA
CTATCTGCTCGTGATGAGAAACACACCTCACCACCAGTTTGTGTTTTCTC
GTTGGTCGCCTTTTTTGTACTATTTTGCTCGCAGGCGTTGGTAGTCGACG
CCCTGGCCGACAAACGCCTGTACGAGCAAGAGCTGGGGCGTATGCGCAAG
GAAAATGCTTTTCTCGAAGATCAGGTAAAGAACAGGGTGGGGGGGAGGAG
AGGCGGGGGACACTCAAGTATAGCGTTACCGTTGGTCACATGTCCTCGAG
ACCACCGAACTGTGTTTCTATTGGAGCGATCTCCGATGGCCAATCGCCTT
TTCCTACGTTGCAGGATGCCACTAAAAAAATATTTTACCTATCCTCTCTA
CCTCAGTCTTCGCCCCTTCAGTCCAATTTTAAGCTCCTAGAACCGCTATC
ATGTTCTTTTCGCGATCTTTAGATTCGAATACCTCTCTATTGCACTCTTC
GATGTTCCCCGATTCACTTATGTAACTTTCTCTCTTTTTTAGATAGGGGG
CATTCTCCCACCACGTGAATTCGGTCATCACACACACTACTTTAGTCACA
ACGTTCACACCACATTGACGTCGTCCTCTACTCTCCTCAAACATTTCTTG
AGTCCCTTCAGGCCAACACCCCCTGACCTGAATTTGACTTTCAGCTTTGT
CCCTGCGTCTAAGGGTATTTAGAGGTATCCCTTTAACCCTATCCCTTCGT
CCAGTTTTTGGTACACTTCCAGGCTTTCCTTACTCGCGGTCTATCTTCCG
GTTCTTGTTTTCTCTGACTGCAATTCCACCCCTAAATATTTCCGCGCGCT
ACATAATGCCACGGCGCGGTTTCCGGACTTCGCCTGTCGCTGTAATTGTG
ACTATATTTCGTGCCTTCTTCTGCTGTTCCGTCGTTTAAATTTCATGTCT
GCGGTGGCGGGTGCGGTCTCCAGGTTCGGCGTGTGAGCGCAGAGTTGAAG
AGGCATCAGATAAGGTACCCACAGACGGCGGCGGGGGTGGCGGAAGGGAG
AAAACCTGCCAAGGCGGGCGGGAGGCAGGAAATGGTCGGCGAAGATTGTC
TTCCTCCCTGGGTGACGTCTTCGGAGGTTATGTCTCCATTGCTGGCGGCG
TACGACGCTAGGATACAGGTGAGAGAAAGAACATGGTTGAAAGACAAGAG
TGGAGATGGAGTATGTACCACAAATGGCGTCCCCCCCTAGTTGAATTTTC
TAGTGATAACCTACTGGGTATTCTTTTGGGCGAAAAACAGATGCTCGGCT
AAGGAGCGCAGGGCGCTGAGTTATCTATGTACCCGACGATACGGGGCTAG
GTTTACTTTTTAAACAAGGCACACATGACCACTCTTCTCCCGAGAGAGCA
ACTGCCCAAAGATCTTGTCCGTGTTTGACTAAATCTGTTTTTGTTATATT
TTGTTTCTTATTCCGAGAGGTACATTCAGTAGGTACGTGAGGCAGCTGTT
TGGTTTACGTTCATCAACATTTATGTGCTTCTACCTCAAATGAGGGGATC
CTCAAGGCAAAAAATAGTGTTGGTAACCCCTATTTGAGGACGAGACAGCT
GGACCCTACGAGGTGCTTCATTCTTAGAAGCTGCTCAAGGAAAGACCTGA
AAATGCTGTTCTGTATCCAAGAAACAGGTATGAGCCGACGCGTACCCGCC
CGCAGCAGAAACTGGTCCTTTTATTTTTTTATATAATCATAATCAACAAC
ATGATCGAAAAAAGGAAAATGAGAAAGGAAACAAAAAGGAAAAAAAAAGA
CCCTACCCTACCCGACCCTACACGACTCAACACAACATTTTTTTTTTTTC
ATCATATTATGGCTGATCAAAAATGTGCCTAAAAAGGTGATATCTGGATT
TCAGGTGAAAAATATATTAAAAAAAAATGTTGATTTTGTCTCGTTTCGTG
GTGGCGGTTGTGTGCAGTAAGTTACTTAGAGGTATGTCTTCTGACGAATG
GACACTGCTTATCCTCCTCAGGCACGCGAATCTTCCAAATAGACCCGCCC
TATATACTAAAATGGGAATACTGGTAGGGTATACCCCTCGTTTTTGCCAT
AAAGTATAGTCAATTCTCCGTGTTGGGCTGAAAACGGCTGTTCATGAAAC
CAAGCAGCCAACCCCACGCACCAATATTTTGGGCAATAAAAAAAATAAAT
GAAAAAAAGAGCATTCCGCGCGACGGTCCAAAGTCACTTCGGTAGGTATG
GTAGTTCATGCTCAGGACAGATCATTGTGCTGATTTTAGCTCCTCTGCAA
ATTAGCACCCATCGCAAGATCTCTAAAAACATCAGGTGTACTGAGATAAC
GCAAATCCTCTTTAAATGACTGACTTTCAGCGCTCCCAGATGCGCTTCCC
TCTTGCTACCTACTCTACATGCCGTCCGTCTTAGGATATGTATATATAGG
ACTTATTCATACACGATGAGAGTGCCTACACACGCAGCTTTTGAAAAATA
TGTCGCGTGAGCTCAGCATGGCGGGCGCACACGTGTAGAGAGCAATATGC
TGCGAAGACACGAAGAGAGCGTGTGCTAACGTCGAGGCGTTCGGTGGGAC
CATAGGACAGAACACGACCAGGCAAGGGACACGCGGGGTGCGCATTTTGA
CTGAACGGAATCGGACGGTCCTGTTGGGATCTTTCCTGTGTGTCCAGTAT
AGAAACACTGGTGATTAGAGTGTCTGCGAAACACTCATCATTTCCTAGAT
ATTTTTAGGTAGTCATGCAGTGGTGGCGCGTCGCTTCCTGATTCAGTTCA
AACCCGTTAAAAGCTGCGCATGCCCCAGGTCTGCTCACATGTGGCTGAGA
CAGCGCTGCGGCTCATCACCCCAGTGGGCCGCGGTACAACTGTCCGTTTT
CTATTACAAAGTGGCAAAATGTTTGCAGTAGAAAATTCATTTTATCAAAG
TGTTTTTTTCGTCTATTTTTCGGTTAAATAGCGACCGTTGCCTAGACGTT
GTGCACGCCTCCCTGTGGTGATGGGCTGCAGCGTTGTCTCAATCGCACGA
GCAGACCTGGGACATATGCACCTTCAACGGGTTTGGACTGAGCCAGGAAG
TGACGAGCCACCACTGCATGCCTCGCGAAAATATTTAGGAATACATACTT
GTTTCGCAAATACTCTATTATCTCGTTTCACGTGTTTGCTTCCGTTCCAT
CTTGCAGGAATTAACGCATAATATGGCTAGTATGTCCGCTGCTAGATTCA
GTTGGGATTTTGAAAGTGAAATGTGGAACAACATGTCCGCCAAGTGGTTG
ATCGGGACGCGCGATCCTCGGGCTGCAAGTGTAATAAATAACGCGTGATA
TGTGTCATTATTGTCGCTATCGCACGGTGGCGGTGGTGGTAGTCCCACAC
GCTCGTCAGTTTTGAGAAAGGCGGAGATATACTCTTGAAAGAGTGCCCTA
CACTATTCTATACTATCCTATCATCTTAGAGAGTATCTCATCCTTCTCCC
TTCCGCTCTACTCGAATTTTTCCCGCTGGTGCTAATGACTACCCGATGAC
TTTATTTTGTCTGCAGGTTTGAGATACAAGCTGCATTCATTAATACATTA
GCATGATTAGTATCCCTCCCTCCCTCCCTCCCGTTCTCTCCGTCCGCATC
GCTTCTTTTTTCTTTGCTCCTTTGCGTGTGCCAACTTGGTGATGCATGAT
ACACCAGGATCTTGAGGGTCAGGTCTCTGGGCAGAAGGAATCAATGGGCG
AGCTCGCCAGCCGTACCCAACAGCTGGTTGACGAGAACGAGCAGGCAAGT
TACATATTGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3830:4966..11977-

>mRNA_H-paniculata_contig3830.10037.1 ID=mRNA_H-paniculata_contig3830.10037.1|Name=mRNA_H-paniculata_contig3830.10037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig3830:4966..11977- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCGTCTGGGGCCCCAGGCAGAGCGGAATAGCGAGTGGGTTAATCG
TGCTGGCGAGGTCAATGCCCCCACGGAGCGCGAGATGGTCCGTCTGGGGC
CCCAGGCAGAGCGGAATAGCGAGTGGGTTAATCGTGCTGGCGAGGTCAAT
GCCCCCACGGAGCGCGAGGCGTTGGTAGTCGACGCCCTGGCCGACAAACG
CCTGTACGAGCAAGAGCTGGGGCGTATGCGCAAGGAAAATGCTTTTCTCG
AAGATCAGGCGTTGGTAGTCGACGCCCTGGCCGACAAACGCCTGTACGAG
CAAGAGCTGGGGCGTATGCGCAAGGAAAATGCTTTTCTCGAAGATCAGGT
TCGGCGTGTGAGCGCAGAGTTGAAGAGGCATCAGATAAGGTACCCACAGA
CGGCGGCGGGGGTGGCGGAAGGGAGAAAACCTGCCAAGGCGGGCGGGAGG
CAGGAAATGGTCGGCGAAGATTGTCTTCCTCCCTGGGTGACGTCTTCGGA
GGTTATGTCTCCATTGCTGGCGGCGTACGACGCTAGGATACAGGTTCGGC
GTGTGAGCGCAGAGTTGAAGAGGCATCAGATAAGGTACCCACAGACGGCG
GCGGGGGTGGCGGAAGGGAGAAAACCTGCCAAGGCGGGCGGGAGGCAGGA
AATGGTCGGCGAAGATTGTCTTCCTCCCTGGGTGACGTCTTCGGAGGTTA
TGTCTCCATTGCTGGCGGCGTACGACGCTAGGATACAGGATCTTGAGGGT
CAGGTCTCTGGGCAGAAGGAATCAATGGGCGAGCTCGCCAGCCGTACCCA
ACAGCTGGTTGACGAGAACGAGCAGGCAAGTTACATATTGTAGGATCTTG
AGGGTCAGGTCTCTGGGCAGAAGGAATCAATGGGCGAGCTCGCCAGCCGT
ACCCAACAGCTGGTTGACGAGAACGAGCAGGCAAGTTACATATTGTAG
back to top