mRNA_H-paniculata_contig3821.10017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3821.10017.1
Unique NamemRNA_H-paniculata_contig3821.10017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3821.10017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3821contigH-paniculata_contig3821:13736..15500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size546
Cds size525
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3821.10017.1prot_H-paniculata_contig3821.10017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3821 13736..15481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930174.7047627-CDS-H-paniculata_contig3821:13735..138801622930174.7047627-CDS-H-paniculata_contig3821:13735..13880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3821 13736..13880 -
1691481177.6072853-CDS-H-paniculata_contig3821:13735..138801691481177.6072853-CDS-H-paniculata_contig3821:13735..13880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3821 13736..13880 -
1622930174.7213545-CDS-H-paniculata_contig3821:15101..154811622930174.7213545-CDS-H-paniculata_contig3821:15101..15481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3821 15102..15481 -
1691481177.6182194-CDS-H-paniculata_contig3821:15101..154811691481177.6182194-CDS-H-paniculata_contig3821:15101..15481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3821 15102..15481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930174.7335851-UTR-H-paniculata_contig3821:15481..155001622930174.7335851-UTR-H-paniculata_contig3821:15481..15500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3821 15482..15500 -
1691481177.6270244-UTR-H-paniculata_contig3821:15481..155001691481177.6270244-UTR-H-paniculata_contig3821:15481..15500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3821 15482..15500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3821.10017.1

>prot_H-paniculata_contig3821.10017.1 ID=prot_H-paniculata_contig3821.10017.1|Name=mRNA_H-paniculata_contig3821.10017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MQRSHTGASTVMTLLLAARGMRICSSLISPSVLSLHHYTAPVSRRSAASA
RCCSFLNKCNSNIFPMKQLSSTVSSNRHPAAAPLLLCTYCSTFERSNRGV
ASIDPPSRGHHGRVSPMWLSAGDVQSSNGDRKLSSDSGGDSTADASPRSP
RVGGIERPLGIRRLGVRAGRAGGRG
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mRNA from alignment at H-paniculata_contig3821:13736..15500-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3821.10017.1 ID=mRNA_H-paniculata_contig3821.10017.1|Name=mRNA_H-paniculata_contig3821.10017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1765bp|location=Sequence derived from alignment at H-paniculata_contig3821:13736..15500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAAGTGTCGTCAAGGCGATGCAACGCTCTCACACGGGGGCATCAACAG
TCATGACTCTCCTACTAGCCGCACGCGGTATGCGCATATGCTCTTCCTTG
ATCTCCCCTTCGGTTTTGTCTCTGCATCATTACACTGCCCCCGTTTCTCG
CCGCAGCGCAGCCTCAGCAAGATGCTGCTCCTTCCTGAATAAGTGCAACA
GCAACATCTTCCCTATGAAACAGCTTTCGTCTACGGTATCATCAAACAGG
CACCCTGCTGCTGCTCCACTACTGCTGTGCACGTATTGCTCCACGTTCGA
GCGTAGTAATCGTGGGGTGGCATCTATAGACCCTCCTTCAAGAGGGCATC
ACGGCAGGGTGTCGCCGATGTGGCTGTCTGCAGGGGATGTCCAAAGCAGG
TATGTTCAACTACGTAACCGCAGTCTTCTCGCAGTCATGTGGCGCACTGT
TTTGGGCTGCTTTAGAAGCGCATGCGCGATAGGCTGTAATGATCGTGTCA
TTACTCCGGGTAATGCAGCACCAGGTGCTCTCCCTGTGGTTGCAGTTGGT
CTTGGTCTCGCTTTGTCGCTACTGCCGATCGAATTTTCAAGTAATTTTTG
TATAGAACTCTACGCCACTACAGTAGAGCAGGTAGATAAATTACATGTTC
CAACAGCACTGACTCTTTGTCAGCTCTGGAGCAAACATGACGAGAGTGTA
GAGGTATGTCAATAATATGGGCATTGCAGAGACGCCAGCTGTTCAACGTG
TGACCTTTTGCACGCCTTGCTCCGAGTCAAAGCATTCGTAACGTCGCGGC
TGCCGCGGATGCAACAACTGCATGCACATTACCCACTGCTCTCCCGCCCA
AAACATTTCAACCATGCAAAACTACAGCACAGGCTGTATGTCACTATACT
CCACTGTGCCGATTGCGTATTTAGTGTTTCTCTGTATATAGCTGCTGCGC
TATTCTCTGCACTGCACTGAGTACTGTGAGCTATGCTGCATGAATCGCCG
TGTACTATATACACGGGTGCTCTCTGTCCAGTTTTGTTCATGCATGTATT
TGGCGCGACCCAGCGCGAGAACGGGCCACCTCCCGATTCTTCCACGATAG
GATAAATTCAAGTAGGGCCTCCCGGTTCTGCAGCAACATTGATTAGTTCC
GAGTCTTCGCTGACTGAGGATTTGTTCTAAAATTTTTACTCTACCCAAAC
AGGGGCATTATCATTGTGTCCGTTCCTATCCTGTACCCGCGTTGCGCACA
AGCAGCTGCCAAAAGATCTAAGGATGAATCCTTCCAATTGGCAAAACTGT
TGGATCATGAATCCTGTTTCGTTTCCTCTCTCCATCTCTCCGTCTCTCTG
TTCATCCCTCCTCCCCTCCCGTAGCACCGTCCGTAAAAAGCAAAACAACG
GATGACAACATTGACACCAACCCGCTCGTTCTTCCCCCTTCTAAGCGCCT
CTGTCTTTCCTTCCTCTCCTCCCCCAACTCCGCCAATGAAAACAATGTTA
GGTTATGACAGTAAACGCCAGCCCACTCGATCGTCTCCTCTCTCCCTCTC
TCCTTCCCCCCCTTGACATCGCCCCCTGTACGGAAACAATCAACCAATCG
AATACCAACACACAAAGCAGCAATGGCGACCGTAAGCTCTCCTCTGATTC
AGGAGGTGACTCAACCGCGGATGCTTCACCACGATCCCCTCGAGTTGGAG
GCATCGAACGGCCCTTGGGAATACGTCGATTGGGCGTTAGGGCCGGGCGC
GCAGGGGGCAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3821:13736..15500-

>mRNA_H-paniculata_contig3821.10017.1 ID=mRNA_H-paniculata_contig3821.10017.1|Name=mRNA_H-paniculata_contig3821.10017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig3821:13736..15500- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACGCTCTCACACGGGGGCATCAACAGTCATGACTCTCCTACTAGC
CGCACGCGGTATGCGCATATGCTCTTCCTTGATCTCCCCTTCGGTTTTGT
CTCTGCATCATTACACTGCCCCCGTTTCTCGCCGCAGCGCAGCCTCAGCA
AGATGCTGCTCCTTCCTGAATAAGTGCAACAGCAACATCTTCCCTATGAA
ACAGCTTTCGTCTACGGTATCATCAAACAGGCACCCTGCTGCTGCTCCAC
TACTGCTGTGCACGTATTGCTCCACGTTCGAGCGTAGTAATCGTGGGGTG
GCATCTATAGACCCTCCTTCAAGAGGGCATCACGGCAGGGTGTCGCCGAT
GTGGCTGTCTGCAGGGGATGTCCAAAGCAGATGCAACGCTCTCACACGGG
GGCATCAACAGTCATGACTCTCCTACTAGCCGCACGCGGTATGCGCATAT
GCTCTTCCTTGATCTCCCCTTCGGTTTTGTCTCTGCATCATTACACTGCC
CCCGTTTCTCGCCGCAGCGCAGCCTCAGCAAGATGCTGCTCCTTCCTGAA
TAAGTGCAACAGCAACATCTTCCCTATGAAACAGCTTTCGTCTACGGTAT
CATCAAACAGGCACCCTGCTGCTGCTCCACTACTGCTGTGCACGTATTGC
TCCACGTTCGAGCGTAGTAATCGTGGGGTGGCATCTATAGACCCTCCTTC
AAGAGGGCATCACGGCAGGGTGTCGCCGATGTGGCTGTCTGCAGGGGATG
TCCAAAGCAGCAATGGCGACCGTAAGCTCTCCTCTGATTCAGGAGGTGAC
TCAACCGCGGATGCTTCACCACGATCCCCTCGAGTTGGAGGCATCGAACG
GCCCTTGGGAATACGTCGATTGGGCGTTAGGGCCGGGCGCGCAGGGGGCA
GGGGGCAATGGCGACCGTAAGCTCTCCTCTGATTCAGGAGGTGACTCAAC
CGCGGATGCTTCACCACGATCCCCTCGAGTTGGAGGCATCGAACGGCCCT
TGGGAATACGTCGATTGGGCGTTAGGGCCGGGCGCGCAGGGGGCAGGGGG
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