mRNA_H-paniculata_contig382.10013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig382.10013.1
Unique NamemRNA_H-paniculata_contig382.10013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig382.10013.1 vs. uniprot
Match: D8LEQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.520e-16
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 3 
Query:  255 TQVSLEGARRAIAWNSTNAFNGCGFDLVWASGRSWSLLCEEPRIRGEWVDTLNVAI 422
            T VSLEGAR A AW+  +AFNGCGFDLVWASGR+WSLLC++P  R  WVD LN+AI
Sbjct:   17 TWVSLEGARHAAAWSGIDAFNGCGFDLVWASGRTWSLLCDDPFSRKSWVDALNLAI 72
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BLAST of mRNA_H-paniculata_contig382.10013.1 vs. uniprot
Match: A0A6H5KGT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT0_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.150e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:  258 QVSLEGARRAIAWNSTNAFNGCGFDLVWASGRSWSLLCEEPRIRGEWVDTLNVAI 422
            +VSLEGAR A AW+  +AFNGCGFDLVWASGR+WSLLC+    R  WVD LN+AI
Sbjct:   41 KVSLEGARHAAAWSGIDAFNGCGFDLVWASGRTWSLLCDNSFSRKSWVDALNLAI 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig382.10013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEQ3_ECTSI2.520e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT0_9PHAE1.150e-1469.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig382contigH-paniculata_contig382:5050..8091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-26_000720.1
Exons4
Model size1198
Cds size1182
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig382.10013.1prot_H-paniculata_contig382.10013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig382 5050..8077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.6178002-CDS-H-paniculata_contig382:5049..58471622930173.6178002-CDS-H-paniculata_contig382:5049..5847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 5050..5847 -
1691481176.9967904-CDS-H-paniculata_contig382:5049..58471691481176.9967904-CDS-H-paniculata_contig382:5049..5847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 5050..5847 -
1622930173.6346695-CDS-H-paniculata_contig382:6223..63611622930173.6346695-CDS-H-paniculata_contig382:6223..6361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 6224..6361 -
1691481177.0096188-CDS-H-paniculata_contig382:6223..63611691481177.0096188-CDS-H-paniculata_contig382:6223..6361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 6224..6361 -
1622930173.6506362-CDS-H-paniculata_contig382:7243..74481622930173.6506362-CDS-H-paniculata_contig382:7243..7448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 7244..7448 -
1691481177.020128-CDS-H-paniculata_contig382:7243..74481691481177.020128-CDS-H-paniculata_contig382:7243..7448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 7244..7448 -
1622930173.6678367-CDS-H-paniculata_contig382:8036..80771622930173.6678367-CDS-H-paniculata_contig382:8036..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 8037..8077 -
1691481177.030329-CDS-H-paniculata_contig382:8036..80771691481177.030329-CDS-H-paniculata_contig382:8036..8077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig382 8037..8077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930173.6860602-UTR-H-paniculata_contig382:8077..80911622930173.6860602-UTR-H-paniculata_contig382:8077..8091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig382 8078..8091 -
1691481177.0388157-UTR-H-paniculata_contig382:8077..80911691481177.0388157-UTR-H-paniculata_contig382:8077..8091Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig382 8078..8091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig382.10013.1

>prot_H-paniculata_contig382.10013.1 ID=prot_H-paniculata_contig382.10013.1|Name=mRNA_H-paniculata_contig382.10013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=394bp
MRGLLKQKVQDADGILCWKSRYFTLEVGTRSLCVVDSSNGFTDNQLDISR
LLAAAIESCPAEAGVGVEGEPENLGPGLSVTQVSLEGARRAIAWNSTNAF
NGCGFDLVWASGRSWSLLCEEPRIRGEWVDTLNVAIDDGAAISPLREDHL
NSSAEDDRRQRSKRSPTRIRRRPHTTKADEKCADRDRRPPDIPRRATATA
MFETPPSSAASAIKSSRGESVARAVAGGRHARNSGHNARVFDRERSSEQY
WSSSVASECRNAASIHIDSRVAKGNDGKGYRNSHQEECMHDNAPDGGVEE
RPAATVVDAAADIAMVSQQGRRYIEHTFSAVAPETSAVERLEAKEVSQGG
GGLYAVSVRADHGACSTVEPPQSKDEKGGRGSEEAKSGSRIFRA
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mRNA from alignment at H-paniculata_contig382:5050..8091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig382.10013.1 ID=mRNA_H-paniculata_contig382.10013.1|Name=mRNA_H-paniculata_contig382.10013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3042bp|location=Sequence derived from alignment at H-paniculata_contig382:5050..8091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGATGATACCATGAGAGGACTGCTGAAACAAAAGGTGCAAGACGCA
GATGGGTGAGTGCAGCACACTGTCCATTTCAGTACGTGTTCACAATGGTA
TTTTGTGTATTCATGATGCTTTGTGTGTGTGCAACTTTGCCATGTGCAAT
CCGACCGTTGCGCTTTATCACGAAGAGTATAATACAGACTACTGCATCTA
GCGAGACGGCAGGGCAGCGTGCGCTGGGGAGGGCTACTGGCTTTAGCACA
AGCTAACGCGATCGCGTTTCCTCAAAACTTCCAGTTCCATGGTGCTTTCG
GTTATTCGTTATCAGCGTGGAAAAATCACTCACTTTTGTTCTATTGGAGT
CGTAGACTACCCAGCAGGTTTTGTTCTTCAGATAGAAACACCAAGTACTC
TAAATTGGGTTGCGGAATAGATGGGTCCATCTTACCGTGGATATCGTCAG
AAGAGGTTTGATCCTGTAAACATGAGTAGTCCAACAGTTTACCTACAGCG
AGTATGCTTCTGCCCGTTACCGAGCCAGAGAGTAGGGTGCTGTCGCGGAA
ACTGGGATCCACCAGAACCGCCTCGTTGCTGGTGATCCACCGCTAGTTCC
TGTATCGCTTGTTGCTTCGCGCTGTTGTCCCCAATCACGATAGCATCTTG
TGCTGGAAGTCGAGGTACTTCACGCTCGAGGTGGGAACTCGGTCACTCTG
CGTGGTTGACTCCAGCAATGGTTTTACAGATAACCAATTGGATATTTCGA
GATTGCTGGCGGCAGCCATTGAATCTTGCCCGGCAGAAGCAGGAGTAGGG
GTGGAAGGCGAGCCTGAAAATCTCGGCCCTGGACTATCTGTTACTCAGGT
GGGGGGATATGCTGCACCAAATGTACTGATGTACTCACTGACTCGCTTAT
TCAGTATATCTGTTGAGTTCTAGGATTGTACGTTATGTGTTGGCGCAAAC
ATGATCTAGTGCCCTCGTACCTACAGTACAGTAGGTGCGTTGCATCCTTT
GTTTTCTCTCTTTCACCGCCTATTTTCCATACTGCACTGTATCTAGAACC
ACGTGCAGTGTCGCTTGAGTGAACTTGCTAGGCAGTAGGCTGCAGACTAC
CGCGAGCGACCATGTAGCTCGTAAAACATGGAATTCTTAACAAAAAGAAA
GTTCTCGCAGCCCATTATGGCATCAAGTAGTAAAGTATTCACCACCCGGA
CAAATACAAATGGAGAAGTCGCAACTATCTCGAATTATCATTTTTTGTCT
TGAATAAACACGTGTTTCTTCGTTCACAAGTGTATGAATGGTCACTCTAC
AGATGGTCACCAAGTAGTCGTATACCCGGCGAACAGTCACACATGCAAGT
CCTGTTTATTTTCCAGGTGGTATTGTACAAATTGAGTACTCTATCTGCCC
GAGCTTTTCGATGCTCCATGGTATATCGAGTACACTGGATATTATTCGCG
TCACATTGAAATCTTGCCCAACTCAAACAGGTACGGTGTTTATTCTAGAT
TTCTCCTCTTTAATTACGTCTTATATTCTTATTTGTCTGGCAGGTGAAAG
TATTACACATGAGTGTAATAGAGAGTTTATTGGTGAGGATCAGTGTACGA
CTGTGCGGTGTCGTCTGTACTTTGGAGAGAGGAGGAAACTGTTTTCCCAT
CCGTCGTGTTTTTTTCCCATCGATCATCGTTCATCATTTGTGCATAACCT
GTTCCCCTCGCCCTCGCTGTACACGCGAAGGTGTCACTGGAAGGAGCAAG
GCGAGCTATCGCATGGAATAGCACAAACGCGTTCAATGGCTGTGGTTTCG
ATTTGGTCTGGGCCAGCGGCCGCTCCTGGTCACTTCTGTGTGAGGAGCCT
CGTATCAGAGGAGAATGGGTGAGTGGTCTCGAGAAGAGAAGATCCGTCAG
TTCTCTTTGGCATGGTATTGAAGGGATCGGCCGTATTTGGCATGTTCAAG
GGGAATAGCGATTTAGCTTGAGCTGCCCATCAATAGCGAATGAATTAGCC
CAGCCATATGGATAAAAGTGATGCCGACTTGTGAGTAATTGCTCGAACCT
GCACAAAAGATAGCACAAGCCGAGTAAAAAACTTTCTCTTTTGCTATTAT
TCTCTGAGCAAGTAAGTGTGCGATCTTGTCAAACCGTGCAGGTTTTTACT
CAAACAAAGCGGACTCGATTATATTTTACATACGCGCACACCTCCCCGTG
TGACGTCTTCAACGACCCGGGTCTGGGCGTTTTTTGCGATACAGGTGGAC
ACTCTCAATGTCGCCATAGACGATGGAGCAGCAATCTCACCGCTGAGAGA
AGACCATCTCAACTCATCAGCCGAGGACGATAGGAGGCAAAGAAGTAAGC
GGTCCCCCACGAGAATTCGCCGCCGGCCTCACACAACAAAAGCAGACGAA
AAATGCGCGGACAGGGATCGACGGCCCCCAGATATTCCACGCAGAGCAAC
AGCGACTGCTATGTTCGAAACCCCGCCATCATCAGCAGCTTCTGCGATCA
AAAGTAGTAGAGGGGAGTCTGTAGCACGGGCGGTGGCGGGAGGCAGGCAT
GCCAGGAACAGCGGTCACAATGCTCGTGTGTTCGACAGAGAGCGTTCCTC
GGAACAATATTGGTCTTCTAGTGTGGCAAGCGAGTGTCGTAACGCCGCCA
GTATTCATATTGATAGCAGGGTAGCAAAGGGCAATGACGGTAAAGGATAC
AGAAATTCCCATCAAGAGGAATGCATGCACGATAATGCGCCAGATGGAGG
AGTAGAAGAACGGCCGGCCGCTACCGTGGTTGACGCCGCTGCCGATATCG
CTATGGTGTCCCAGCAAGGGCGACGGTATATAGAGCACACCTTTAGCGCT
GTCGCGCCCGAAACTTCCGCCGTCGAGCGTTTAGAGGCAAAAGAAGTCTC
GCAGGGGGGAGGGGGGCTGTACGCTGTGTCAGTACGTGCCGACCATGGGG
CTTGTTCTACTGTAGAGCCGCCTCAAAGCAAGGACGAAAAAGGTGGTAGA
GGAAGCGAAGAGGCCAAAAGTGGCAGTCGGATATTTCGCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig382:5050..8091-

>mRNA_H-paniculata_contig382.10013.1 ID=mRNA_H-paniculata_contig382.10013.1|Name=mRNA_H-paniculata_contig382.10013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at H-paniculata_contig382:5050..8091- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGGACTGCTGAAACAAAAGGTGCAAGACGCAGATGGATGAGAGGA
CTGCTGAAACAAAAGGTGCAAGACGCAGATGGCATCTTGTGCTGGAAGTC
GAGGTACTTCACGCTCGAGGTGGGAACTCGGTCACTCTGCGTGGTTGACT
CCAGCAATGGTTTTACAGATAACCAATTGGATATTTCGAGATTGCTGGCG
GCAGCCATTGAATCTTGCCCGGCAGAAGCAGGAGTAGGGGTGGAAGGCGA
GCCTGAAAATCTCGGCCCTGGACTATCTGTTACTCAGCATCTTGTGCTGG
AAGTCGAGGTACTTCACGCTCGAGGTGGGAACTCGGTCACTCTGCGTGGT
TGACTCCAGCAATGGTTTTACAGATAACCAATTGGATATTTCGAGATTGC
TGGCGGCAGCCATTGAATCTTGCCCGGCAGAAGCAGGAGTAGGGGTGGAA
GGCGAGCCTGAAAATCTCGGCCCTGGACTATCTGTTACTCAGGTGTCACT
GGAAGGAGCAAGGCGAGCTATCGCATGGAATAGCACAAACGCGTTCAATG
GCTGTGGTTTCGATTTGGTCTGGGCCAGCGGCCGCTCCTGGTCACTTCTG
TGTGAGGAGCCTCGTATCAGAGGAGAATGGGTGTCACTGGAAGGAGCAAG
GCGAGCTATCGCATGGAATAGCACAAACGCGTTCAATGGCTGTGGTTTCG
ATTTGGTCTGGGCCAGCGGCCGCTCCTGGTCACTTCTGTGTGAGGAGCCT
CGTATCAGAGGAGAATGGGTGGACACTCTCAATGTCGCCATAGACGATGG
AGCAGCAATCTCACCGCTGAGAGAAGACCATCTCAACTCATCAGCCGAGG
ACGATAGGAGGCAAAGAAGTAAGCGGTCCCCCACGAGAATTCGCCGCCGG
CCTCACACAACAAAAGCAGACGAAAAATGCGCGGACAGGGATCGACGGCC
CCCAGATATTCCACGCAGAGCAACAGCGACTGCTATGTTCGAAACCCCGC
CATCATCAGCAGCTTCTGCGATCAAAAGTAGTAGAGGGGAGTCTGTAGCA
CGGGCGGTGGCGGGAGGCAGGCATGCCAGGAACAGCGGTCACAATGCTCG
TGTGTTCGACAGAGAGCGTTCCTCGGAACAATATTGGTCTTCTAGTGTGG
CAAGCGAGTGTCGTAACGCCGCCAGTATTCATATTGATAGCAGGGTAGCA
AAGGGCAATGACGGTAAAGGATACAGAAATTCCCATCAAGAGGAATGCAT
GCACGATAATGCGCCAGATGGAGGAGTAGAAGAACGGCCGGCCGCTACCG
TGGTTGACGCCGCTGCCGATATCGCTATGGTGTCCCAGCAAGGGCGACGG
TATATAGAGCACACCTTTAGCGCTGTCGCGCCCGAAACTTCCGCCGTCGA
GCGTTTAGAGGCAAAAGAAGTCTCGCAGGGGGGAGGGGGGCTGTACGCTG
TGTCAGTACGTGCCGACCATGGGGCTTGTTCTACTGTAGAGCCGCCTCAA
AGCAAGGACGAAAAAGGTGGTAGAGGAAGCGAAGAGGCCAAAAGTGGCAG
TCGGATATTTCGCGCGGTGGACACTCTCAATGTCGCCATAGACGATGGAG
CAGCAATCTCACCGCTGAGAGAAGACCATCTCAACTCATCAGCCGAGGAC
GATAGGAGGCAAAGAAGTAAGCGGTCCCCCACGAGAATTCGCCGCCGGCC
TCACACAACAAAAGCAGACGAAAAATGCGCGGACAGGGATCGACGGCCCC
CAGATATTCCACGCAGAGCAACAGCGACTGCTATGTTCGAAACCCCGCCA
TCATCAGCAGCTTCTGCGATCAAAAGTAGTAGAGGGGAGTCTGTAGCACG
GGCGGTGGCGGGAGGCAGGCATGCCAGGAACAGCGGTCACAATGCTCGTG
TGTTCGACAGAGAGCGTTCCTCGGAACAATATTGGTCTTCTAGTGTGGCA
AGCGAGTGTCGTAACGCCGCCAGTATTCATATTGATAGCAGGGTAGCAAA
GGGCAATGACGGTAAAGGATACAGAAATTCCCATCAAGAGGAATGCATGC
ACGATAATGCGCCAGATGGAGGAGTAGAAGAACGGCCGGCCGCTACCGTG
GTTGACGCCGCTGCCGATATCGCTATGGTGTCCCAGCAAGGGCGACGGTA
TATAGAGCACACCTTTAGCGCTGTCGCGCCCGAAACTTCCGCCGTCGAGC
GTTTAGAGGCAAAAGAAGTCTCGCAGGGGGGAGGGGGGCTGTACGCTGTG
TCAGTACGTGCCGACCATGGGGCTTGTTCTACTGTAGAGCCGCCTCAAAG
CAAGGACGAAAAAGGTGGTAGAGGAAGCGAAGAGGCCAAAAGTGGCAGTC
GGATATTTCGCGCG
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