mRNA_H-paniculata_contig38086.9989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38086.9989.1
Unique NamemRNA_H-paniculata_contig38086.9989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.650e-17
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            QAARQL LPSF LAHLL+ FCDFV DKKHQLSDWRMRPLP +ML
Sbjct:  417 QAARQLGLPSFGLAHLLEKFCDFVPDKKHQLSDWRMRPLPADML 460
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A0D2U959_CAPO3 (Exosome component 10 protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U959_CAPO3)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            QAAR L L S+SLAHLL+ FC+  ADKK+QL+DWR+RP+P EML
Sbjct:  396 QAARVLELGSYSLAHLLRYFCNVTADKKYQLADWRIRPIPAEML 439
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A5C3QJ95_9AGAR (HRDC domain-containing protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QJ95_9AGAR)

HSP 1 Score: 65.1 bits (157), Expect = 4.280e-11
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 AARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            A++ L  P   LAHLL+ +CDFV DKKHQLSDWR+RPLP +ML
Sbjct:  460 ASKVLDFPRHGLAHLLEMYCDFVPDKKHQLSDWRIRPLPEDML 502
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A1Y1I4U0_KLENI (HRDC domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I4U0_KLENI)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEMLK 135
            QAARQLAL  F L HLL+ FC    DK++QL+DWR+RPLP EM K
Sbjct:  432 QAARQLALSGFGLGHLLEHFCGVHTDKRYQLADWRLRPLPEEMFK 476
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A0D0DC32_9AGAM (HRDC domain-containing protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0DC32_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 AARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            A++ L  P  SLA+LL+TFCDF+ DK++QL+DWR+RPLP EML
Sbjct:  403 ASKLLEFPRHSLANLLETFCDFIPDKRYQLADWRIRPLPVEML 445
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: L8H2P3_ACACA (3'5' exonuclease domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2P3_ACACA)

HSP 1 Score: 63.9 bits (154), Expect = 1.090e-10
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEMLK 135
            QA R L  PSFSLA+LL+  C  +ADKK+QL+DWR+RPLP EMLK
Sbjct:  361 QACRVLEYPSFSLAYLLRHHCGVLADKKYQLADWRIRPLPEEMLK 405
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A0C9W6V2_9AGAM (HRDC domain-containing protein n=1 Tax=Hydnomerulius pinastri MD-312 TaxID=994086 RepID=A0A0C9W6V2_9AGAM)

HSP 1 Score: 63.5 bits (153), Expect = 1.490e-10
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 AARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            A++ L  P  SLA+LL+T+CDF+ DK++QL+DWR+RPLP EML
Sbjct:  396 ASKVLEFPKHSLANLLETYCDFIPDKRYQLADWRIRPLPNEML 438
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: D2VPJ2_NAEGR (3'-5' exonuclease and HRDC domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VPJ2_NAEGR)

HSP 1 Score: 63.5 bits (153), Expect = 1.490e-10
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEMLK 135
            QA R LALP  SLA+LL+ +C   ADKK+QL+DWR+RPLP+EM+K
Sbjct:  445 QACRTLALPGCSLAYLLKHYCGIDADKKYQLADWRVRPLPSEMVK 489
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BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: A0A0C3BAH9_9AGAM (HRDC domain-containing protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3BAH9_9AGAM)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 AARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            A+R L LP  SLA LL  +CDF ADK++QL+DWR+RPLP+EML
Sbjct:  343 ASRALELPRASLAFLLSAYCDFTADKRYQLADWRIRPLPSEML 385
[Close]
BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Match: G4TVA2_SERID (Related to nucleolar 100K polymyositis-scleroderma protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TVA2_SERID)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-10
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 AARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEML 132
            A+R L LP  SLA LL  +CDF ADK++QL+DWR+RPLP EML
Sbjct:  344 ASRALELPRHSLAFLLSAYCDFTADKRYQLADWRIRPLPAEML 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38086.9989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE8_ECTSI4.650e-1784.09HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A0D2U959_CAPO31.680e-1168.18Exosome component 10 protein n=1 Tax=Capsaspora ow... [more]
A0A5C3QJ95_9AGAR4.280e-1165.12HRDC domain-containing protein n=1 Tax=Pterula gra... [more]
A0A1Y1I4U0_KLENI8.000e-1164.44HRDC domain-containing protein n=1 Tax=Klebsormidi... [more]
A0A0D0DC32_9AGAM8.000e-1162.79HRDC domain-containing protein n=1 Tax=Paxillus ru... [more]
L8H2P3_ACACA1.090e-1066.673'5' exonuclease domain containing protein n=1 Tax... [more]
A0A0C9W6V2_9AGAM1.490e-1060.47HRDC domain-containing protein n=1 Tax=Hydnomeruli... [more]
D2VPJ2_NAEGR1.490e-1064.443'-5' exonuclease and HRDC domain-containing prote... [more]
A0A0C3BAH9_9AGAM1.500e-1065.12HRDC domain-containing protein n=1 Tax=Serendipita... [more]
G4TVA2_SERID1.500e-1065.12Related to nucleolar 100K polymyositis-scleroderma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38086contigH-paniculata_contig38086:1708..1845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue4.6e-14
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categorysignal peptide
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.6144063-CDS-H-paniculata_contig38086:1707..18451622930170.6144063-CDS-H-paniculata_contig38086:1707..1845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38086 1708..1845 +
1691481175.7620015-CDS-H-paniculata_contig38086:1707..18451691481175.7620015-CDS-H-paniculata_contig38086:1707..1845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38086 1708..1845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38086.9989.1prot_H-paniculata_contig38086.9989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38086 1708..1845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38086.9989.1

>prot_H-paniculata_contig38086.9989.1 ID=prot_H-paniculata_contig38086.9989.1|Name=mRNA_H-paniculata_contig38086.9989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
QAARQLALPSFSLAHLLQTFCDFVADKKHQLSDWRMRPLPTEMLK*
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mRNA from alignment at H-paniculata_contig38086:1708..1845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38086.9989.1 ID=mRNA_H-paniculata_contig38086.9989.1|Name=mRNA_H-paniculata_contig38086.9989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig38086:1708..1845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGCGCGTCAGTTAGCACTGCCGTCCTTTAGCCTGGCTCATCTGCT
CCAGACGTTCTGCGACTTCGTGGCGGACAAGAAACATCAGCTCAGCGACT
GGAGAATGCGGCCGCTGCCGACTGAAATGCTCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38086:1708..1845+

>mRNA_H-paniculata_contig38086.9989.1 ID=mRNA_H-paniculata_contig38086.9989.1|Name=mRNA_H-paniculata_contig38086.9989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig38086:1708..1845+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGCGCGTCAGTTAGCACTGCCGTCCTTTAGCCTGGCTCATCTGCT
CCAGACGTTCTGCGACTTCGTGGCGGACAAGAAACATCAGCTCAGCGACT
GGAGAATGCGGCCGCTGCCGACTGAAATGCTCAAGTGACAGGCGGCGCGT
CAGTTAGCACTGCCGTCCTTTAGCCTGGCTCATCTGCTCCAGACGTTCTG
CGACTTCGTGGCGGACAAGAAACATCAGCTCAGCGACTGGAGAATGCGGC
CGCTGCCGACTGAAATGCTCAAGTGA
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