mRNA_H-paniculata_contig3808.9986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3808.9986.1
Unique NamemRNA_H-paniculata_contig3808.9986.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3808.9986.1 vs. uniprot
Match: D7FSB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.970e-72
Identity = 117/176 (66.48%), Postives = 134/176 (76.14%), Query Frame = 1 
Query:    1 MPVGVNNFDRLTADTLKWRPESAERSAWAQVFLSLLTQSSSLASFPSYNVVLGFWGLYSVFTRSLQATHVYVWLLCCSIVLDIIFCSIWGSNDIGIFYELTTKFCLVMLILNILAKAVGVYTFLRLYKELEAGSIRPH----APPSE----------AYNMPKMSSREERAPMGSP 486
            MPVG NNFDRL    L+WRPESAER+AW QVF SLLTQ+SSLA+FPSYNVVLG WGLYSV+T+SLQ+T VY+ LLC SI+LDIIFCSIWGSND GIF   T  FCLVMLILN+LAK   VY FLR YKE+E+G+IRP     AP  +          AY+M  MS+ EERAP+GSP
Sbjct:    1 MPVGENNFDRLAKSALRWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYKEMESGAIRPQERLGAPAKQGGRQSAGGRGAYDMAPMSTHEERAPVGSP 176
[Close]
BLAST of mRNA_H-paniculata_contig3808.9986.1 vs. uniprot
Match: A0A835YRK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.370e-44
Identity = 84/159 (52.83%), Postives = 105/159 (66.04%), Query Frame = 1 
Query:    1 MPVGVNNFDRLTADTLKWRPESAERSAWAQVFLSLLTQSSSLASFPSYNVVLGFWGLYSVFTRSLQATHVYVWLLCCSIVLDIIFCSIWGSNDIGIFYELTTKFCLVMLILNILAKAVGVYTFLRLYK----ELEAGSIRPHAPPSEAYNMPKMSSREE 465
            M  GVN+F+R+  + L W PE  ERSAW QVFLS+LTQ    ASFPSYNVVLGFWGLY  FTRS QA + Y+W L  SI+LDII+CS+WGSN   +F   T  FCLVMLI N+  KAV +  F +L+K    EL   ++RP A    + N+    +R+E
Sbjct:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRP-ANRRASINLALKQARKE 158
[Close]
BLAST of mRNA_H-paniculata_contig3808.9986.1 vs. uniprot
Match: A0A7S1XR43_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR43_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.590e-12
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   70 ERSAWAQVFLSLLTQSSSLASFPSYNVVLGFWGLYSVFTRSLQATHVYVWLLCCSIVLDIIFCSIWGSNDIGIFYE----LTTKFCLVMLILNILAKAVGVYTFLRLYKEL 390
            E+    Q+ LS LTQ S   SFPSYN++LGFW  Y  +T++++    +V L   SI+LDI F + WG+ +   F       +++F L M++ N+ AK  G++    L+  L
Sbjct:   15 EKCGLGQLVLSFLTQVSGEISFPSYNILLGFWCCYCAWTKNVRGIFAFVCLTLLSIILDIAFMATWGTGEENYFETGDNASSSQFALAMMVFNLFAKFWGLWCSAHLWGAL 125
[Close]
BLAST of mRNA_H-paniculata_contig3808.9986.1 vs. uniprot
Match: A0A7S1U2V5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2V5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-8
Identity = 34/97 (35.05%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  112 QSSSLASFPSYNVVLGFWGLYSVFTRSLQATHVYVWLLCCSIVLDIIFCSIWGSNDIGIFYE----LTTKFCLVMLILNILAKAVGVYTFLRLYKEL 390
            Q S   SFPSYN++LGFW  Y  +T++++    +V L   SI+LDI F + WG+ +   F       +++F L M++ N+ AK  G++    L+  L
Sbjct:   44 QVSGEISFPSYNILLGFWCCYCAWTKNVRGIFAFVCLTLLSIILDIAFMATWGTGEENYFETGDNASSSQFALAMMVFNLFAKFWGLWCSAHLWGAL 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3808.9986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSB1_ECTSI2.970e-7266.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRK6_9STRA4.370e-4452.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XR43_9STRA2.590e-1236.04Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U2V5_9STRA1.350e-835.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3808contigH-paniculata_contig3808:234..2044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
Exons4
Model size498
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3808.9986.1prot_H-paniculata_contig3808.9986.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3808 234..2044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.2571785-CDS-H-paniculata_contig3808:233..4631622930170.2571785-CDS-H-paniculata_contig3808:233..463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 234..463 -
1691481175.5958595-CDS-H-paniculata_contig3808:233..4631691481175.5958595-CDS-H-paniculata_contig3808:233..463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 234..463 -
1622930170.2704227-CDS-H-paniculata_contig3808:1124..11831622930170.2704227-CDS-H-paniculata_contig3808:1124..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1125..1183 -
1691481175.6046352-CDS-H-paniculata_contig3808:1124..11831691481175.6046352-CDS-H-paniculata_contig3808:1124..1183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1125..1183 -
1622930170.2823956-CDS-H-paniculata_contig3808:1567..16571622930170.2823956-CDS-H-paniculata_contig3808:1567..1657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1568..1657 -
1691481175.6122158-CDS-H-paniculata_contig3808:1567..16571691481175.6122158-CDS-H-paniculata_contig3808:1567..1657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1568..1657 -
1622930170.2952933-CDS-H-paniculata_contig3808:1925..20441622930170.2952933-CDS-H-paniculata_contig3808:1925..2044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1926..2044 -
1691481175.620055-CDS-H-paniculata_contig3808:1925..20441691481175.620055-CDS-H-paniculata_contig3808:1925..2044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3808 1926..2044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3808.9986.1

>prot_H-paniculata_contig3808.9986.1 ID=prot_H-paniculata_contig3808.9986.1|Name=mRNA_H-paniculata_contig3808.9986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MPVGVNNFDRLTADTLKWRPESAERSAWAQVFLSLLTQSSSLASFPSYNV
VLGFWGLYSVFTRSLQATHVYVWLLCCSIVLDIIFCSIWGSNDIGIFYEL
TTKFCLVMLILNILAKAVGVYTFLRLYKELEAGSIRPHAPPSEAYNMPKM
SSREERAPMGSPTGR*
back to top

mRNA from alignment at H-paniculata_contig3808:234..2044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3808.9986.1 ID=mRNA_H-paniculata_contig3808.9986.1|Name=mRNA_H-paniculata_contig3808.9986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1811bp|location=Sequence derived from alignment at H-paniculata_contig3808:234..2044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGTGGGCGTCAATAATTTCGATCGCCTCACAGCGGACACATTAAA
ATGGCGTCCTGAAAGTGCGGAGAGATCAGCGTGGGCGCAAGTGTTCCTAT
CTTTATTGACGCAATCAAGGTGAGGAAGACTATACGAACAGGTTTCACTC
GGCACCAGAGGATGATATGTGTTATGTACCCCATGCGGTAGGTTGGCTAC
CCACCACAGCATGCAGCGAGTTGTCCCATGAGCGAACAAGCCTGCGCGAA
AAGGATGTTATTCGAACACTGCGGTTTTGCGGTGTGGTTTGGTGTATGCA
TGGCACCTGCATATACTGTACTGACCGAGTTTCGTTTGCAATATTGTGAC
CATCGGTTGTTCGCATTCAATCGACTCGTGCACGCAGTTCTCTGGCCTCC
TTCCCATCATACAACGTCGTGCTCGGCTTCTGGGGATTGTACAGTGTCTT
CACGAGGAGTCTCCAAGCCACCCATGTGTGAGTATATACAGATCAAAATG
ATTTGAGGTGATTAACCCTCTTCACAGATAACTCTGCCATCTGCGATCGA
CAAGCGCGCATGGTATTCGGCTCTGGTCCTCTCTGACGATGGAGAACATG
TCGCGCCACGCGTACTCAGAGCAAATTTGACAAATGGACGACATAACAAG
CACATCCCCACGCCCATGCAAACTGACTGGAATGCCCCAAATTTCACAAC
GCTTCTCTTGCACCGCAGTCGCTCAGTTCGACCAGTAGCGGTAACTGAGA
ACTCTATACAGATATCAGTGTCCAATATCTGATCGTTCACCATCTACTAT
ACTTGATTCGCAATCGTTCACGCTTAACGGTCCCATGTTCCAACCACTTT
TCGGACTTCAGGTACGTATGGCTCTTGTGCTGCTCCATCGTGCTGGATAT
AATATTCTGCTCTATTTGGGGTGAGAGCTCGAGCGGGACGACGGCATAGT
TGAGATGATTCATTGTTGAGTAGTCAGCTAGGTATTACTTTTAGACAAGC
TGCGCCAGCTCATGTATGCACTCGTTTGAGTAGAACGGGTATTATCGGCA
AATACTTCAAGGATAGGGAGTAGGTATCGGCTTCAGTAGGGAAGAGGGTA
TGACCTGAAATGATGGAGCGGAAACGAAAGACTGGCCGTAAGAGTGCGCT
TAGATAGACTATGGTTGAACGCCGATAGTACCGTCAACAGTATAACTGGT
AGAATCACCCTACGGTAGGGGGAGGGTGGTATTTAAGCCGCTTTGTTTAA
CGAAGGAGCCGCTCTGAGAAGGGGTCCGCTAACTTTCAATTTTTGTTTTG
TTTTGTTTTGCTTTGCTTTTGTTGCCCGCCCTTAAAGGTAACTCCAATTT
CAACTCGTGGAATGTGCACCTTTAGGGATGCGCGAACACATGCAATTGAA
ATGGTTTTGATTCGCGTTAGTTTTGATCCGATTTTTGGGAAGCGGCTTTC
GTTAAACGATTGACTTAGTAGGCCTTGATGATATGCAAGACGATACACCA
AGGTTTGACTTTCTTCAAAATACTATTTTCAAAGTTGGTACAAACGCTAC
TACTGTGAATCATTACGTGGAACACTCGCAGGAAGTAACGACATCGGGAT
TTTTTATGAGTTGACTACCAAGTTCTGCCTGGTCATGTTAATCCTCAACA
TTTTGGCCAAGGCCGTCGGCGTATACACGTTTCTGAGGCTATACAAAGAA
CTGGAGGCTGGTTCAATCCGTCCTCATGCTCCCCCCAGCGAGGCATATAA
TATGCCCAAGATGTCGTCGAGGGAAGAGCGAGCTCCTATGGGATCTCCTA
CAGGTAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3808:234..2044-

>mRNA_H-paniculata_contig3808.9986.1 ID=mRNA_H-paniculata_contig3808.9986.1|Name=mRNA_H-paniculata_contig3808.9986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig3808:234..2044- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGTGGGCGTCAATAATTTCGATCGCCTCACAGCGGACACATTAAA
ATGGCGTCCTGAAAGTGCGGAGAGATCAGCGTGGGCGCAAGTGTTCCTAT
CTTTATTGACGCAATCAAGATGCCAGTGGGCGTCAATAATTTCGATCGCC
TCACAGCGGACACATTAAAATGGCGTCCTGAAAGTGCGGAGAGATCAGCG
TGGGCGCAAGTGTTCCTATCTTTATTGACGCAATCAAGTTCTCTGGCCTC
CTTCCCATCATACAACGTCGTGCTCGGCTTCTGGGGATTGTACAGTGTCT
TCACGAGGAGTCTCCAAGCCACCCATGTTTCTCTGGCCTCCTTCCCATCA
TACAACGTCGTGCTCGGCTTCTGGGGATTGTACAGTGTCTTCACGAGGAG
TCTCCAAGCCACCCATGTGTACGTATGGCTCTTGTGCTGCTCCATCGTGC
TGGATATAATATTCTGCTCTATTTGGGGTACGTATGGCTCTTGTGCTGCT
CCATCGTGCTGGATATAATATTCTGCTCTATTTGGGGAAGTAACGACATC
GGGATTTTTTATGAGTTGACTACCAAGTTCTGCCTGGTCATGTTAATCCT
CAACATTTTGGCCAAGGCCGTCGGCGTATACACGTTTCTGAGGCTATACA
AAGAACTGGAGGCTGGTTCAATCCGTCCTCATGCTCCCCCCAGCGAGGCA
TATAATATGCCCAAGATGTCGTCGAGGGAAGAGCGAGCTCCTATGGGATC
TCCTACAGGTAGGTGAGAAGTAACGACATCGGGATTTTTTATGAGTTGAC
TACCAAGTTCTGCCTGGTCATGTTAATCCTCAACATTTTGGCCAAGGCCG
TCGGCGTATACACGTTTCTGAGGCTATACAAAGAACTGGAGGCTGGTTCA
ATCCGTCCTCATGCTCCCCCCAGCGAGGCATATAATATGCCCAAGATGTC
GTCGAGGGAAGAGCGAGCTCCTATGGGATCTCCTACAGGTAGGTGA
back to top