mRNA_H-paniculata_contig38069.9983.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38069.9983.1
Unique NamemRNA_H-paniculata_contig38069.9983.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.380e-28
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:   10 VGVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQV 180
            VGVVRMENLDAASRQLARNA YGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQV
Sbjct:  376 VGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQV 432
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.870e-27
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:   10 VGVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            VGVVRMENLDAASRQLARNA YGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ
Sbjct:  407 VGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 462
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 72.8 bits (177), Expect = 1.610e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++  SRQL +N  + +HGPG  T  A HSKFIA+GTS+GL+L+FDHFQ
Sbjct:  190 GVVKVEAMETISRQLKKNIEFKEHGPGSPTVVAIHSKFIAIGTSKGLVLIFDHFQ 244
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A2P4XRT3_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.880e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  166 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 220
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A0W8DEQ5_PHYNI (Phosphatidylinositol transfer protein beta isoform n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEQ5_PHYNI)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  149 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 203
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A2P4Y7R6_9STRA (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.620e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  690 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 744
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A0P1AJW9_PLAHL (Vacuolar assembly/sorting protein VPS8 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW9_PLAHL)

HSP 1 Score: 71.2 bits (173), Expect = 5.620e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  165 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 219
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A484E0X2_BRELC (Vps8 domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E0X2_BRELC)

HSP 1 Score: 71.2 bits (173), Expect = 5.630e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  163 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 217
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 5.630e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  150 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 204
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BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.630e-13
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   13 GVVRMENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 177
            GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  478 GVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 532
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38069.9983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE5.380e-2898.25Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI1.870e-2798.21Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8K1FDH6_PYTOL1.610e-1358.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XRT3_9STRA3.880e-1356.36Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A0W8DEQ5_PHYNI5.540e-1356.36Phosphatidylinositol transfer protein beta isoform... [more]
A0A2P4Y7R6_9STRA5.620e-1356.36Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phyt... [more]
A0A0P1AJW9_PLAHL5.620e-1356.36Vacuolar assembly/sorting protein VPS8 n=1 Tax=Pla... [more]
A0A484E0X2_BRELC5.630e-1356.36Vps8 domain-containing protein n=2 Tax=Peronospora... [more]
G4Z679_PHYSP5.630e-1356.36Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A662WX84_9STRA5.630e-1356.36Chromo domain-containing protein n=2 Tax=Nothophyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38069contigH-paniculata_contig38069:358..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue7.6e-21
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size183
Cds size159
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.9897878-UTR-H-paniculata_contig38069:357..3811622930169.9897878-UTR-H-paniculata_contig38069:357..381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38069 358..381 +
1691481175.4493961-UTR-H-paniculata_contig38069:357..3811691481175.4493961-UTR-H-paniculata_contig38069:357..381Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38069 358..381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930170.0032895-CDS-H-paniculata_contig38069:381..5401622930170.0032895-CDS-H-paniculata_contig38069:381..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38069 382..540 +
1691481175.4588542-CDS-H-paniculata_contig38069:381..5401691481175.4588542-CDS-H-paniculata_contig38069:381..540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38069 382..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38069.9983.1prot_H-paniculata_contig38069.9983.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38069 382..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38069.9983.1

>prot_H-paniculata_contig38069.9983.1 ID=prot_H-paniculata_contig38069.9983.1|Name=mRNA_H-paniculata_contig38069.9983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MENLDAASRQLARNATYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHF
QV*
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mRNA from alignment at H-paniculata_contig38069:358..540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38069.9983.1 ID=mRNA_H-paniculata_contig38069.9983.1|Name=mRNA_H-paniculata_contig38069.9983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig38069:358..540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGGCGGTAGGGGTTGTAAGGATGGAGAATCTGGACGCAGCTAGTCG
ACAGCTTGCCCGGAATGCCACTTACGGAAAGCACGGGCCCGGGGTGTGCA
CGGCAACGGCGGCGCACTCGAAGTTTATTGCTGTGGGGACTTCGAGGGGG
CTCATTCTGCTCTTTGATCATTTTCAGGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig38069:358..540+

>mRNA_H-paniculata_contig38069.9983.1 ID=mRNA_H-paniculata_contig38069.9983.1|Name=mRNA_H-paniculata_contig38069.9983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig38069:358..540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAATCTGGACGCAGCTAGTCGACAGCTTGCCCGGAATGCCACTTA
CGGAAAGCACGGGCCCGGGGTGTGCACGGCAACGGCGGCGCACTCGAAGT
TTATTGCTGTGGGGACTTCGAGGGGGCTCATTCTGCTCTTTGATCATTTT
CAGGTATAAATGGAGAATCTGGACGCAGCTAGTCGACAGCTTGCCCGGAA
TGCCACTTACGGAAAGCACGGGCCCGGGGTGTGCACGGCAACGGCGGCGC
ACTCGAAGTTTATTGCTGTGGGGACTTCGAGGGGGCTCATTCTGCTCTTT
GATCATTTTCAGGTATAA
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