mRNA_H-paniculata_contig38031.9976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38031.9976.1
Unique NamemRNA_H-paniculata_contig38031.9976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.120e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            PQVFFLYFTLFH+YFFSFPFGFSY+ALVTTVLFLQHSMLF WNRYEV
Sbjct:  564 PQVFFLYFTLFHIYFFSFPFGFSYLALVTTVLFLQHSMLFCWNRYEV 610
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.310e-19
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYE 138
            PQVFFLYFTLFHVYFFSFPFGFSY+ALVTTVLFLQHSMLF WNRYE
Sbjct:  610 PQVFFLYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFCWNRYE 655
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S1ZZD9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZD9_TRICV)

HSP 1 Score: 77.4 bits (189), Expect = 9.040e-17
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P+VFFLYFTLFH YFFS PFGF+Y +LV+T LFL HSMLFFWNRYE+
Sbjct:   65 PRVFFLYFTLFHAYFFSCPFGFTYASLVSTGLFLTHSMLFFWNRYEL 111
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: B8CG87_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG87_THAPS)

HSP 1 Score: 76.3 bits (186), Expect = 5.220e-15
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P+VFFLYFTLFHVYFFS P GF+Y +L +T+LFL HSMLFFWNRYE+
Sbjct:  318 PRVFFLYFTLFHVYFFSCPVGFTYASLASTILFLCHSMLFFWNRYEL 364
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S2F3B4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3B4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.910e-14
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P++FFLY TLFHVYFFSFP GFS++AL+TT   L H+ML+FWNR+EV
Sbjct:   70 PRIFFLYLTLFHVYFFSFPMGFSHLALLTTFCLLLHAMLYFWNRFEV 116
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S2Q0B9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q0B9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.410e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P+VFFLYFTLFHVYFFS P GF+Y +L +TVLFL H++LFFWNRYE+
Sbjct:  542 PRVFFLYFTLFHVYFFSCPVGFTYASLASTVLFLFHTILFFWNRYEL 588
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A835Z245_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z245_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-13
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWN 129
            P+V   YF LFHVYFFSFPFGFSY+ALV+TVLFLQHSML+FWN
Sbjct:  296 PRVVSFYFALFHVYFFSFPFGFSYLALVSTVLFLQHSMLYFWN 338
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S2E6X8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6X8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P  FFLYFTLFHVYFFS PFGFSY AL +T +F+ H+M+FFWNRYE+
Sbjct:  474 PCAFFLYFTLFHVYFFSCPFGFSYSALGSTSIFVLHAMIFFWNRYEI 520
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S2SU34_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU34_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.320e-12
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P++F LYFTLFHVYFFS+PF FS++AL++TV  L H MLFFW+R+EV
Sbjct:  220 PRLFLLYFTLFHVYFFSYPFAFSHLALLSTVTLLCHGMLFFWDRFEV 266
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BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Match: A0A7S3XKM1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM1_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 2.010e-11
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV 141
            P+ F LYF+LFH YFF FPFGFSY+AL+T  LFL H+M+  W RYEV
Sbjct:  116 PRAFLLYFSLFHAYFFMFPFGFSYLALLTAALFLVHAMVHCWARYEV 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38031.9976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK2_ECTSI5.120e-2093.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K094_9PHAE1.310e-1995.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1ZZD9_TRICV9.040e-1778.72Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8CG87_THAPS5.220e-1576.60Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2F3B4_9STRA2.910e-1470.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2Q0B9_9STRA3.410e-1474.47Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A835Z245_9STRA1.330e-1381.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2E6X8_9STRA2.220e-1372.34Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SU34_9STRA2.320e-1268.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XKM1_HETAK2.010e-1165.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38031contigH-paniculata_contig38031:1607..1747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.3108816-CDS-H-paniculata_contig38031:1606..17471622930169.3108816-CDS-H-paniculata_contig38031:1606..1747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38031 1607..1747 +
1691481175.217735-CDS-H-paniculata_contig38031:1606..17471691481175.217735-CDS-H-paniculata_contig38031:1606..1747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38031 1607..1747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38031.9976.1prot_H-paniculata_contig38031.9976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38031 1607..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38031.9976.1

>prot_H-paniculata_contig38031.9976.1 ID=prot_H-paniculata_contig38031.9976.1|Name=mRNA_H-paniculata_contig38031.9976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
PQVFFLYFTLFHVYFFSFPFGFSYVALVTTVLFLQHSMLFFWNRYEV
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mRNA from alignment at H-paniculata_contig38031:1607..1747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38031.9976.1 ID=mRNA_H-paniculata_contig38031.9976.1|Name=mRNA_H-paniculata_contig38031.9976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig38031:1607..1747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGTGTTCTTTCTGTACTTCACCCTTTTTCACGTGTATTTTTTCTC
CTTTCCCTTCGGGTTCAGCTACGTGGCACTGGTGACCACCGTGCTCTTCC
TGCAGCACTCCATGCTGTTCTTTTGGAACCGATATGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig38031:1607..1747+

>mRNA_H-paniculata_contig38031.9976.1 ID=mRNA_H-paniculata_contig38031.9976.1|Name=mRNA_H-paniculata_contig38031.9976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig38031:1607..1747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGTGTTCTTTCTGTACTTCACCCTTTTTCACGTGTATTTTTTCTC
CTTTCCCTTCGGGTTCAGCTACGTGGCACTGGTGACCACCGTGCTCTTCC
TGCAGCACTCCATGCTGTTCTTTTGGAACCGATATGAGGTGCCACAGGTG
TTCTTTCTGTACTTCACCCTTTTTCACGTGTATTTTTTCTCCTTTCCCTT
CGGGTTCAGCTACGTGGCACTGGTGACCACCGTGCTCTTCCTGCAGCACT
CCATGCTGTTCTTTTGGAACCGATATGAGGTG
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