mRNA_H-paniculata_contig37969.9956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37969.9956.1
Unique NamemRNA_H-paniculata_contig37969.9956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37969.9956.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.470e-22
Identity = 58/126 (46.03%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:    1 VPL--ESFKPFWRWFWLATETLQRTGAWEAGERAGRRGFAGFLKKATANKRIADADAGTFLVRFSSSKGGAMAVH-CKSKSSAVMNVRVNVNEAGQLWVDDKPNEK-HHNLAAFVMSVRHMKCLHP 366
            VP+  +  +PFWRWFW A  TL+RT AW  G      GFAGF+KK TA   ++  + GTFLVRFS+SK GA+AVH  + +   V++  VNV+ AG L V+ +  E+  H+L   V+S   +K LHP
Sbjct:  845 VPISRKKLEPFWRWFWQAVTTLRRTPAWSTGLNGPALGFAGFMKKETALALLSSEEPGTFLVRFSTSKPGALAVHYVRKRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTGQLKFLHP 970
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37969.9956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE3.470e-2246.03SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37969contigH-paniculata_contig37969:1165..1557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LEZ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Src homology 2 domains
EggNOG OGs2CNGK@1,2QW5N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.611811-CDS-H-paniculata_contig37969:1164..15571622930166.611811-CDS-H-paniculata_contig37969:1164..1557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37969 1165..1557 +
1691481173.9450278-CDS-H-paniculata_contig37969:1164..15571691481173.9450278-CDS-H-paniculata_contig37969:1164..1557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37969 1165..1557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37969.9956.1prot_H-paniculata_contig37969.9956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37969 1165..1557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37969.9956.1

>prot_H-paniculata_contig37969.9956.1 ID=prot_H-paniculata_contig37969.9956.1|Name=mRNA_H-paniculata_contig37969.9956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
VPLESFKPFWRWFWLATETLQRTGAWEAGERAGRRGFAGFLKKATANKRI
ADADAGTFLVRFSSSKGGAMAVHCKSKSSAVMNVRVNVNEAGQLWVDDKP
NEKHHNLAAFVMSVRHMKCLHPDNTPKEWVF
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mRNA from alignment at H-paniculata_contig37969:1165..1557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37969.9956.1 ID=mRNA_H-paniculata_contig37969.9956.1|Name=mRNA_H-paniculata_contig37969.9956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=393bp|location=Sequence derived from alignment at H-paniculata_contig37969:1165..1557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCACTGGAGAGCTTCAAGCCTTTCTGGCGGTGGTTTTGGCTGGCGAC
GGAGACTCTGCAGCGCACGGGGGCTTGGGAGGCCGGGGAGCGCGCCGGGA
GGCGCGGGTTCGCGGGATTCCTCAAGAAGGCAACCGCAAACAAAAGGATC
GCGGACGCGGACGCGGGAACGTTCCTGGTACGGTTCTCCTCGAGCAAGGG
CGGCGCTATGGCGGTGCACTGCAAAAGCAAAAGCAGCGCAGTGATGAACG
TGCGCGTGAACGTGAACGAGGCCGGGCAGCTCTGGGTGGACGACAAACCC
AACGAGAAGCACCACAATCTAGCAGCATTCGTCATGTCTGTGCGACACAT
GAAATGCCTGCACCCAGATAACACCCCCAAAGAGTGGGTCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig37969:1165..1557+

>mRNA_H-paniculata_contig37969.9956.1 ID=mRNA_H-paniculata_contig37969.9956.1|Name=mRNA_H-paniculata_contig37969.9956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig37969:1165..1557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCACTGGAGAGCTTCAAGCCTTTCTGGCGGTGGTTTTGGCTGGCGAC
GGAGACTCTGCAGCGCACGGGGGCTTGGGAGGCCGGGGAGCGCGCCGGGA
GGCGCGGGTTCGCGGGATTCCTCAAGAAGGCAACCGCAAACAAAAGGATC
GCGGACGCGGACGCGGGAACGTTCCTGGTACGGTTCTCCTCGAGCAAGGG
CGGCGCTATGGCGGTGCACTGCAAAAGCAAAAGCAGCGCAGTGATGAACG
TGCGCGTGAACGTGAACGAGGCCGGGCAGCTCTGGGTGGACGACAAACCC
AACGAGAAGCACCACAATCTAGCAGCATTCGTCATGTCTGTGCGACACAT
GAAATGCCTGCACCCAGATAACACCCCCAAAGAGTGGGTCTTTGTGCCAC
TGGAGAGCTTCAAGCCTTTCTGGCGGTGGTTTTGGCTGGCGACGGAGACT
CTGCAGCGCACGGGGGCTTGGGAGGCCGGGGAGCGCGCCGGGAGGCGCGG
GTTCGCGGGATTCCTCAAGAAGGCAACCGCAAACAAAAGGATCGCGGACG
CGGACGCGGGAACGTTCCTGGTACGGTTCTCCTCGAGCAAGGGCGGCGCT
ATGGCGGTGCACTGCAAAAGCAAAAGCAGCGCAGTGATGAACGTGCGCGT
GAACGTGAACGAGGCCGGGCAGCTCTGGGTGGACGACAAACCCAACGAGA
AGCACCACAATCTAGCAGCATTCGTCATGTCTGTGCGACACATGAAATGC
CTGCACCCAGATAACACCCCCAAAGAGTGGGTCTTT
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