mRNA_H-paniculata_contig3796.9954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3796.9954.1
Unique NamemRNA_H-paniculata_contig3796.9954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: D8LGN4_ECTSI (Uncharacterized protein n=5 Tax=Eukaryota TaxID=2759 RepID=D8LGN4_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 4.960e-89
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            +S  GRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV
Sbjct:    1 MSKRGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 140
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: A0A0N8BNL5_9CRUS (60S ribosomal protein L23 n=27 Tax=Eukaryota TaxID=2759 RepID=A0A0N8BNL5_9CRUS)

HSP 1 Score: 243 bits (619), Expect = 2.400e-76
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1 
Query:   13 GRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            GR G  GNKYR+TLGLPV AVMNC DNSGAKNLYII+VCGIKGRLNRLP+AG+GDMV+ATV+KGKP+LRKKVMPA+V+RQR+AWRRKDGVFIYFEDN GVIVN KGEMKGSAI GPV KECAD+WPRIASNAGSIV
Sbjct:    6 GRGGLTGNKYRITLGLPVGAVMNCADNSGAKNLYIIAVCGIKGRLNRLPAAGLGDMVLATVKKGKPDLRKKVMPAIVIRQRRAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVGKECADIWPRIASNAGSIV 141
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BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: F0WHX9_9STRA (60S ribosomal protein L23 putative n=3 Tax=Oomycota TaxID=4762 RepID=F0WHX9_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.720e-75
Identity = 116/139 (83.45%), Postives = 127/139 (91.37%), Query Frame = 1 
Query:    4 STAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            S  GR GA GNK RM LGLPVAAV NC DNSGA+NLYII+VCGIKGRLNRLP+AGVGDMV+ATV+KGKP+LRKKVMPAV++RQRK+WRR+DGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIASNAGSIV
Sbjct:    3 SKRGRGGASGNKLRMALGLPVAAVANCADNSGARNLYIIAVCGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVIIRQRKSWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASNAGSIV 141
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: A0A1Y1Y5E8_9FUNG (Ribosomal protein L14b/L23e n=8 Tax=Zoopagomycota TaxID=1913638 RepID=A0A1Y1Y5E8_9FUNG)

HSP 1 Score: 237 bits (604), Expect = 4.210e-74
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            +S  GR GA GNK+RM+LGLPV AV+NC DNSGAKNLYII+V GIKGRLNRLP+AGVGDMVMATV+KGKP+LRKKVMPAVV+RQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIAS++G++V
Sbjct:    1 MSKRGRGGAAGNKFRMSLGLPVGAVINCADNSGAKNLYIIAVTGIKGRLNRLPAAGVGDMVMATVKKGKPDLRKKVMPAVVIRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: M4TPD7_9METZ (60S ribosomal protein L23 n=10 Tax=Eumetazoa TaxID=6072 RepID=M4TPD7_9METZ)

HSP 1 Score: 237 bits (604), Expect = 4.210e-74
Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSI 417
            +S  GR G+ G+K+R++LGLPV AVMNC DN+GAKNLYIISV GIKGRLNR+PSAG+GD+V+ATV+KGKPELRKKVMPAVVVRQRK +RRKDGVFIYFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI
Sbjct:    1 MSKRGRGGSSGSKFRISLGLPVGAVMNCADNTGAKNLYIISVKGIKGRLNRMPSAGIGDLVLATVKKGKPELRKKVMPAVVVRQRKPYRRKDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
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BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: A0A1D1YVF2_9ARAE (60S ribosomal protein L23 n=7 Tax=Eukaryota TaxID=2759 RepID=A0A1D1YVF2_9ARAE)

HSP 1 Score: 236 bits (602), Expect = 8.410e-74
Identity = 114/140 (81.43%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            +S  GR GA GNK+RMTLGLPV A+MNC DNSGAKNLYIISV GI GRLNRLP+AGVGDMVMATV+KG+P+LRKKVMPAVV+RQRK WRRKDGVF+YFEDN GVIVN KGEMKGSAI GPV KECADLWPRIAS++G++V
Sbjct:    1 MSKRGRGGASGNKFRMTLGLPVGAIMNCADNSGAKNLYIISVKGIHGRLNRLPAAGVGDMVMATVKKGRPDLRKKVMPAVVIRQRKPWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPRIASSSGTVV 140
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: A0A0L0HBL9_SPIPD (60S ribosomal protein L23 n=5 Tax=Fungi incertae sedis TaxID=112252 RepID=A0A0L0HBL9_SPIPD)

HSP 1 Score: 235 bits (600), Expect = 1.680e-73
Identity = 112/140 (80.00%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 420
            +S  GR+GA GNK+RMTLGLPV AVMNC DNSGAKNLYIISV GIKGRLNRLP+AGVGDMV+ATV+KGKP+LRKKVMPAVV+RQRK WRR+DG+++YFEDN GVIVN KGEMKGSAI GPV KECADLWP+IAS++G++V
Sbjct:    1 MSKRGRSGASGNKFRMTLGLPVGAVMNCADNSGAKNLYIISVKGIKGRLNRLPAAGVGDMVLATVKKGKPDLRKKVMPAVVIRQRKPWRRRDGIYLYFEDNAGVIVNPKGEMKGSAITGPVGKECADLWPKIASSSGTVV 140
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: G1PSV9_MYOLU (60S ribosomal protein L23 n=9 Tax=Euteleostomi TaxID=117571 RepID=G1PSV9_MYOLU)

HSP 1 Score: 234 bits (598), Expect = 3.360e-73
Identity = 115/139 (82.73%), Postives = 128/139 (92.09%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSI 417
            +S  GR G+ G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLP+AGVGDMVMATV+KGKPELRKKV PAVV+RQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI
Sbjct:    1 VSPTGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: A0A8C9SMH9_SCLFO (60S ribosomal protein L23 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C9SMH9_SCLFO)

HSP 1 Score: 234 bits (598), Expect = 3.360e-73
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSI 417
            +S  GR G+ G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLP+AGVGDMVMATV+KGKPELRKKV PAVVVRQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI
Sbjct:    1 LSRGGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVVRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Match: RL23_DANRE (60S ribosomal protein L23 n=15 Tax=Bilateria TaxID=33213 RepID=RL23_DANRE)

HSP 1 Score: 234 bits (598), Expect = 3.360e-73
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 1 
Query:    1 ISTAGRAGAQGNKYRMTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATVRKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSI 417
            +S  GR G+ G K+R++LGLPV AV+NC DN+GAKNLYIISV GIKGRLNRLPSAGVGDMVMATV+KGKPELRKKV PAVV+RQRK++RRKDGVF+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAGSI
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3796.9954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGN4_ECTSI4.960e-8997.86Uncharacterized protein n=5 Tax=Eukaryota TaxID=27... [more]
A0A0N8BNL5_9CRUS2.400e-7685.2960S ribosomal protein L23 n=27 Tax=Eukaryota TaxID... [more]
F0WHX9_9STRA2.720e-7583.4560S ribosomal protein L23 putative n=3 Tax=Oomycot... [more]
A0A1Y1Y5E8_9FUNG4.210e-7481.43Ribosomal protein L14b/L23e n=8 Tax=Zoopagomycota ... [more]
M4TPD7_9METZ4.210e-7483.4560S ribosomal protein L23 n=10 Tax=Eumetazoa TaxID... [more]
A0A1D1YVF2_9ARAE8.410e-7481.4360S ribosomal protein L23 n=7 Tax=Eukaryota TaxID=... [more]
A0A0L0HBL9_SPIPD1.680e-7380.0060S ribosomal protein L23 n=5 Tax=Fungi incertae s... [more]
G1PSV9_MYOLU3.360e-7382.7360S ribosomal protein L23 n=9 Tax=Euteleostomi Tax... [more]
A0A8C9SMH9_SCLFO3.360e-7383.4560S ribosomal protein L23 n=2 Tax=Euteleostomi Tax... [more]
RL23_DANRE3.360e-7383.4560S ribosomal protein L23 n=15 Tax=Bilateria TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3796contigH-paniculata_contig3796:999..3973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue7e-65
Seed eggNOG ortholog2880.D8LGN4
Preferred nameRPL23
KEGG koko:K02894
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000184,GO:0000956,GO:0001221,GO:0001223,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006606,GO:0006610,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017022,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022411,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032984,GO:0032986,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042886,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045786,GO:0045787,GO:0045861,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070180,GO:0070727,GO:0070887,GO:0070972,GO:0071156,GO:0071157,GO:0071158,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0072716,GO:0072717,GO:0080090,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901798,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.large ribosomal subunit rRNA binding
EggNOG OGsCOG0093@1,KOG0901@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons4
Model size1272
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3796.9954.1prot_H-paniculata_contig3796.9954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3796 1848..3928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.1048374-UTR-H-paniculata_contig3796:998..18471622930166.1048374-UTR-H-paniculata_contig3796:998..1847Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3796 999..1847 -
1691481173.7548265-UTR-H-paniculata_contig3796:998..18471691481173.7548265-UTR-H-paniculata_contig3796:998..1847Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3796 999..1847 -
1622930166.2228224-UTR-H-paniculata_contig3796:3928..39731622930166.2228224-UTR-H-paniculata_contig3796:3928..3973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3796 3929..3973 -
1691481173.805436-UTR-H-paniculata_contig3796:3928..39731691481173.805436-UTR-H-paniculata_contig3796:3928..3973Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3796 3929..3973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930166.130665-CDS-H-paniculata_contig3796:1847..19301622930166.130665-CDS-H-paniculata_contig3796:1847..1930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 1848..1930 -
1691481173.7674549-CDS-H-paniculata_contig3796:1847..19301691481173.7674549-CDS-H-paniculata_contig3796:1847..1930Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 1848..1930 -
1622930166.1423264-CDS-H-paniculata_contig3796:2245..23591622930166.1423264-CDS-H-paniculata_contig3796:2245..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 2246..2359 -
1691481173.7767134-CDS-H-paniculata_contig3796:2245..23591691481173.7767134-CDS-H-paniculata_contig3796:2245..2359Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 2246..2359 -
1622930166.1566656-CDS-H-paniculata_contig3796:3169..32291622930166.1566656-CDS-H-paniculata_contig3796:3169..3229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 3170..3229 -
1691481173.7856073-CDS-H-paniculata_contig3796:3169..32291691481173.7856073-CDS-H-paniculata_contig3796:3169..3229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 3170..3229 -
1622930166.1821303-CDS-H-paniculata_contig3796:3807..39281622930166.1821303-CDS-H-paniculata_contig3796:3807..3928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 3808..3928 -
1691481173.7967033-CDS-H-paniculata_contig3796:3807..39281691481173.7967033-CDS-H-paniculata_contig3796:3807..3928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3796 3808..3928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3796.9954.1

>prot_H-paniculata_contig3796.9954.1 ID=prot_H-paniculata_contig3796.9954.1|Name=mRNA_H-paniculata_contig3796.9954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MTLGLPVAAVMNCCDNSGAKNLYIISVCGIKGRLNRLPSAGVGDMVMATV
RKGKPELRKKVMPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGS
AINGPVAKECADLWPRIASNAGSIV*
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mRNA from alignment at H-paniculata_contig3796:999..3973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3796.9954.1 ID=mRNA_H-paniculata_contig3796.9954.1|Name=mRNA_H-paniculata_contig3796.9954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2975bp|location=Sequence derived from alignment at H-paniculata_contig3796:999..3973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCCACGGCAGGTCGTGCTGGTGCCCAGGGCAACAAATACCGTATGAC
CCTTGGTCTGCCCGTGGCCGCAGTGATGAACTGCTGTGACAATAGCGGTG
CGAAGAACCTGTACATCATTTCCGTGTGCGGGATCAAGGGTCGCCTGAAT
CGTCTTCCTTCTGCGGGTATGTTGCTGTGTTAACTTGGCTGGTGAACACT
TGAGCCATATTCTCTGAGTAGTTTGGGGTACTGAAGTAATCGGTAATGCA
AAGAGGAGTTAATGTGAGATGCCCTAGAAAACTCCTTAGTGCTCGCATGT
TCTTGAATGATTCCACGGACAACTGCGACTCGTTAGATTTCTTGGAAGTT
GGAAGCTTATTTTCGAAGTATTTTTGCTCGGATGCCCGAGAATCCACTCG
ATCTTGAGGTCGTGTGTACCAACTCCAGCCTCAACTATGAGGGTATTGAG
GTTCAGGTGGCAATTTTTCTGGAGATACAGCCCGTCGAGTACGGAGGTAT
CTGATGCTGTCAGATCCTAGACCCGTACTAGATTTCTCTCGACCAACGAA
TTATGTTCCACCTCACTGTTTCCATGCCAGCGCTTCGACATATACCACTT
CCGTCGGACTAGGGATTTTGTTTGCTTTACTCCCGTGATGTGATCTATGG
ACAGGGTAGATATGAGTGAGATCAGGCGCTAGGGCCGGCAATCGGTCCCA
CTAGCTCATATGCTGCCCGTTTGTGCTCGTTCTTCCTTCCGCAGGTGTCG
GTGACATGGTGATGGCCACGGTAAGGAAGGGGAAGCCCGAGCTAAGGAAG
AAAGGTGATGTATATTGTTCCTGTGGATTTGCGAAAAACAAAATTCCTTC
GGCATAACCACACAAGTCTAAAAAGAATATCTGTTGGGTCCCCCTCACTC
GGTTTGTAAGCGAGGTACGCTTCTCGGTCATGCTCTTGGCCTTGATTGAG
CAACAAACCCTTCCATGTGAAGGCGGAATAGATTGATGGTCTTTTATCAC
ACAACTCATGCTCGATTAACCTCGAGAGGCGTGGAAACATGCATCCTCAT
TTGGTTAGTCAGCATGTATCACAGCGGGTTACCGGGATGCCTAGGTGGCG
TATGACAACTCTTGACGTTTGTCATCATGGGTTCTTGACAAATTGTGCCT
ACCTTTTGGTACACGGCACCGGGAGTGTTCATCTGATTAAAGGTCACCCA
ACTAGTCGGTCGCATTGCAGTATACAACCCGGCCGACATGGAAATATATG
GGATATTCATGAAAGTTACAAGACTCACCTTTCCCCTGTTGAGTAGATCG
GCAACCAGTTTTCCACTCTCAGCGCGTAATTTGGGATCTTAATCGAGATT
CCAAGCATCGAAACGATGCTTGCTCCAAATATGGACAAAATTTCAGATGT
CTCTTGAATAACTGTTGCGCCGGGTACCGAAGTTGGAAACTTGCTGGCTA
TTGAAGTCTTGGGGTAACTTGGAGATGAACCAAGCATCGTCAGCTGCTCA
TCACTTCTTTATTTATTACTATGTGGACGTGCTGACGTCGCGGTTGTTGA
CTTCTACGAGTTTATACAGACGTTGAAGAATGACTTTGTCGTACTGTCGA
AATATTATCAACAGTGATGCCCGCGGTGGTGGTGAGACAACGCAAGGCCT
GGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGATAACGGCGGCGTC
ATTGTCAACAACAAGGGTGAAATGAAAGGTAAATCGAGTGTTTTCCCCCG
AATGCGACTACCACGCTGGTGATTACATGTTTTTGTATGTCGGTACATCG
GTATCGCGCGTCTTGCATGGGAAGGTAGAGATGCAGATGTATACACCTGG
GTACACTTGTTGGAGTTGTAATGAGGTAGGTGAAGGGTCATGCGGATAGA
GTTCGGTAAAAACACTTTCCTTCTTTACTTTTGATGGACCTACCCCGAGA
CCGAAGAGGACTCAAACATTTTAGCTTTTAGGCCCTTGCTGCTTGGCTCA
TTCAGGTTTCCCATGAATCCACAATCTTGGTTTTATTTCTCAGGTTCTGC
GATCAACGGCCCTGTGGCAAAGGAATGTGCCGACCTATGGCCTCGTATCG
CTAGCAATGCTGGTTCGATCGTCTAAGAATCGACTACCGTTATCCTCTTG
AAGTTTCTGCTCTAAACCGCACGGCGACTACATCGCAAGTACGTACGAGG
AGGAAAGAGGACGTGGGAGCATTCAAGAGAGCTGACGAGGGCGCTTCACA
AATTACCCGTGTTCGGTCTCATGTCGATGCGTTTCTCACCTTTTCGTGGC
AGCCGTTGCGCGAGGGCTCGGTGTTCCACGAAAGTAATGTGTTGTGGTCT
AGGGCCACTGGTACCAGGCTTGGATGCCTGGGCGGCAGAAAAGGGAGCTG
CGTCAATCTGAACTTCACGTATTCGGACCATCTTGTCTCAGTGGTACTTG
TAACGTCCTTGATTTGTGCTCGCAGATGAGTTGCTCGAGGCTTTGCTCGT
TGCGTGGTGGCACGAACCTGATCTTGATCCTTTCTCGCTTCATCAATATC
CGAGGGAGAAGACATCAACTCACGTCTGAGCGACGTTGACATGCTTCACC
AAGTAGTATTCTGAAGTTTCGTCCGAGAGAAGATGAAATCTCGAAAAATT
TGCCCTCATCCAGAGAATATTTCCGAGATGGATCAAAATATCGTGGAATG
GAAATCAATTCGAAGAGTCCGATATTACTCTCTTTCAGAATGTTTCGAAG
AAAACCTCTCGGTGAATTAGGACGGTGAAAATATCGCGACCGATGACGTT
TTGACTTTCCATTGGAAGAAATGACCGGATATTATACGACAAAAAATGGT
GAAAAAAATGGTTCTTGTTGAAACCTCCGGAAGGTGGAGGTTAAGACTGT
AGTCGGTGCATCCGTACTCGAATAATTTACTAAAGTATATCTACGTTTCC
ATGATGGAACAGACATTTTTTCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3796:999..3973-

>mRNA_H-paniculata_contig3796.9954.1 ID=mRNA_H-paniculata_contig3796.9954.1|Name=mRNA_H-paniculata_contig3796.9954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig3796:999..3973- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCTTGGTCTGCCCGTGGCCGCAGTGATGAACTGCTGTGACAATAG
CGGTGCGAAGAACCTGTACATCATTTCCGTGTGCGGGATCAAGGGTCGCC
TGAATCGTCTTCCTTCTGCGGATGACCCTTGGTCTGCCCGTGGCCGCAGT
GATGAACTGCTGTGACAATAGCGGTGCGAAGAACCTGTACATCATTTCCG
TGTGCGGGATCAAGGGTCGCCTGAATCGTCTTCCTTCTGCGGGTGTCGGT
GACATGGTGATGGCCACGGTAAGGAAGGGGAAGCCCGAGCTAAGGAAGAA
AGGTGTCGGTGACATGGTGATGGCCACGGTAAGGAAGGGGAAGCCCGAGC
TAAGGAAGAAAGTGATGCCCGCGGTGGTGGTGAGACAACGCAAGGCCTGG
AGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGATAACGGCGGCGTCAT
TGTCAACAACAAGGGTGAAATGAAAGTGATGCCCGCGGTGGTGGTGAGAC
AACGCAAGGCCTGGAGGCGGAAGGACGGTGTGTTCATCTACTTCGAGGAT
AACGGCGGCGTCATTGTCAACAACAAGGGTGAAATGAAAGGTTCTGCGAT
CAACGGCCCTGTGGCAAAGGAATGTGCCGACCTATGGCCTCGTATCGCTA
GCAATGCTGGTTCGATCGTCTAAGTTCTGCGATCAACGGCCCTGTGGCAA
AGGAATGTGCCGACCTATGGCCTCGTATCGCTAGCAATGCTGGTTCGATC
GTCTAA
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