mRNA_H-paniculata_contig3794.9951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3794.9951.1
Unique NamemRNA_H-paniculata_contig3794.9951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3794.9951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3794contigH-paniculata_contig3794:12427..13975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size258
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3794.9951.1prot_H-paniculata_contig3794.9951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3794 12455..13913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.3193674-UTR-H-paniculata_contig3794:12426..124541622930165.3193674-UTR-H-paniculata_contig3794:12426..12454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3794 12427..12454 -
1691481173.551689-UTR-H-paniculata_contig3794:12426..124541691481173.551689-UTR-H-paniculata_contig3794:12426..12454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3794 12427..12454 -
1622930165.7878842-UTR-H-paniculata_contig3794:13913..139751622930165.7878842-UTR-H-paniculata_contig3794:13913..13975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3794 13914..13975 -
1691481173.5862596-UTR-H-paniculata_contig3794:13913..139751691481173.5862596-UTR-H-paniculata_contig3794:13913..13975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3794 13914..13975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930165.3796313-CDS-H-paniculata_contig3794:12454..125341622930165.3796313-CDS-H-paniculata_contig3794:12454..12534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3794 12455..12534 -
1691481173.5618641-CDS-H-paniculata_contig3794:12454..125341691481173.5618641-CDS-H-paniculata_contig3794:12454..12534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3794 12455..12534 -
1622930165.7720587-CDS-H-paniculata_contig3794:13825..139131622930165.7720587-CDS-H-paniculata_contig3794:13825..13913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3794 13826..13913 -
1691481173.571709-CDS-H-paniculata_contig3794:13825..139131691481173.571709-CDS-H-paniculata_contig3794:13825..13913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3794 13826..13913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3794.9951.1

>prot_H-paniculata_contig3794.9951.1 ID=prot_H-paniculata_contig3794.9951.1|Name=mRNA_H-paniculata_contig3794.9951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MEAHGQCGRKVGFTFVCTTTLHNKVEAVAGSAVLLRRIGQNINHHGEDRE
SFFRS*
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mRNA from alignment at H-paniculata_contig3794:12427..13975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3794.9951.1 ID=mRNA_H-paniculata_contig3794.9951.1|Name=mRNA_H-paniculata_contig3794.9951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1549bp|location=Sequence derived from alignment at H-paniculata_contig3794:12427..13975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGGTACTGTATAGAAAATGACTGGAAGAGAAAATTTGTAGAATTGGA
TCATGGTTAACAATGGAGGCACACGGGCAGTGTGGCAGAAAAGTGGGGTT
CACCTTTGTGTGCACAACAACATTACACAACAAGGTAGAAGCGGTGGCAG
GTGAGTTGAGCAGGGGTCAACATGAGCGGCCTGAAGAGAATGAAACTACA
GTTAAATCGAGAGGGAACAGACGAACTTGCAGAGGATGAGCTGAAAACGT
GGTCGGGTGGTTTGTAAACAATGTATGTGTGTAAGTCAACGTTTGCACAG
CCAAGCACCAACAACTCATTAAGTATCGTTAGATAGACAGTCCAAAGAGT
CACCGTCAGTTCTGCCATTGTGTAGATGATTAAACCAGGCTACGATTGTC
TGTGTCTGCCTAATAGGCAATCCTAGAATCCACGCCCATTTCCTCCCGTC
ATATTTCACGGTGTCCCACGGCTGCTGCGGTGGTGTATGCTTACTTCTTG
CTCGAGGGGGAGGGGGAGGATCCATTCCAATCCAGCCAACCTCTCTGAAC
GACAGTAGGTGCTTTTCTCTATTAATACAAGTGTCTCGTCTGCTTTCATA
CACATACATGTACATGTACAGCTGCTGCTGTTTGTGGTTGAACATTCTTG
TAGTCACAAAATATTGGCCATACAAGCAGACAGTTGTCATGACTTGTGGC
CCCAAAAGATGCAACGTTGGAAGTCCCTCACAAGGTTTGTTTGCGGGCTG
GCGGATTGGTTCAACCAAAGATAAAAACACCCCGTTTTGTGGCCTCGCGT
GGATGCTCGTTTCTTGGGCTAGACATGTACGATGTTTGTACGTGGTTCAG
TCAGCGGTTGCGATTTGGGTAGCCTGTGCTTTGTGTGTGTGTGTATTGCT
GGCGTGTTCTGGTGTTCGTCTGAGGTTCGGGTGTGGTCTGTCCAGCTCAA
GTAGATGCCCTGTGTGATGCTTCAAGTCTGATCGGCGATCTCTGTATCGC
AGATTTGAACCTTCTGCTATACACTAAGTAACGGCCCGCTCACAAGAAAC
TGAAAATAGGACTCGCTAGAGTCATCCGCATTACTGTATCTTCACTGACT
ATCAGTTCTCTGAGAGATTCAAATCACCCGGAACGCCCAACACATGTATG
TGCCGATAGGACGAATGTCTCGAGCCTCAACGACAACCATCAAGCGTAAA
AAATATGTGCTATTACCACCCGGCCGGTTAGCTGTTTTTGTGTCCAGATG
AGATTTTCTCGAGCACGAACTTAATCTGTCAAAAAGAGTGCTTAGATCGA
CCACTACATCTCGACGAGATAAACCATGCTTCTAAATTAGCTTCCAACGC
GGTGCAGTAGAGAGTCAGACTTGAAATTTATGCTGTGTTTTGTTCAGTGT
ACATGTTATATAATACCATTGTATTATGTATATATGTTCAGGTTCTGCCG
TTCTACTTCGGAGGATCGGCCAAAATATCAACCATCATGGTGAGGATAGG
GAATCGTTCTTCCGCAGCTAGCAAAAATGTGGCAAAACAATGCGCCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3794:12427..13975-

>mRNA_H-paniculata_contig3794.9951.1 ID=mRNA_H-paniculata_contig3794.9951.1|Name=mRNA_H-paniculata_contig3794.9951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig3794:12427..13975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCACACGGGCAGTGTGGCAGAAAAGTGGGGTTCACCTTTGTGTG
CACAACAACATTACACAACAAGGTAGAAGCGGTGGCAGATGGAGGCACAC
GGGCAGTGTGGCAGAAAAGTGGGGTTCACCTTTGTGTGCACAACAACATT
ACACAACAAGGTAGAAGCGGTGGCAGGTTCTGCCGTTCTACTTCGGAGGA
TCGGCCAAAATATCAACCATCATGGTGAGGATAGGGAATCGTTCTTCCGC
AGCTAGGTTCTGCCGTTCTACTTCGGAGGATCGGCCAAAATATCAACCAT
CATGGTGAGGATAGGGAATCGTTCTTCCGCAGCTAG
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