mRNA_H-paniculata_contig3793.9950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI) HSP 1 Score: 216 bits (551), Expect = 6.210e-67 Identity = 115/243 (47.33%), Postives = 142/243 (58.44%), Query Frame = 1
Query: 1 QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQYVDSS------------PY-DLGCYTDSQNGRIMT-IKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTD-SEMTTELCEASCEGSAFFGTQYGIE 684
+LC TC GS +F TQYG EC+CG DY +GEST+CT++C GDAD CGG +A NVY+Y D S P+ LGCY D + RIM + L+D MTT+ LCE TC GS +F TQYG EC+CG + D+ HGESTECT C GDAD+ CGG +A NVY + + T + +GCY D RIM LTD S MT E+CEA C G+ +FG QYG E
Sbjct: 14 ELCEQTCVGSIYFATQYGRECWCGSVGADYTVHGESTDCTYACSGDADQTCGGFDAANVYRYTDDSTPSXXXXXTEAAPFVALGCYGDDREARIMDDLVLSDSSMTTE--LCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGETSTSSL------------------VGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTE 236
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI) HSP 1 Score: 218 bits (556), Expect = 5.770e-65 Identity = 116/244 (47.54%), Postives = 139/244 (56.97%), Query Frame = 1
Query: 1 QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQYV--------------DSSPYDLGCYTDSQNGRIMT-IKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTDSE-MTTELCEASCEGSAFFGTQYGIE 684
+LC TC G+ +F TQYG EC+CG DY +GES +CT++C GDAD CGG +A NVY Y +S P LGCY D + RIM + L+D MTT+ LCE TC G+ FF TQYG EC+CG D+ HGEST+CT AC GDAD+ CGG +A NVY Y T T +GCY D RIM L LTDS MT E+CEA C GS +FG QYG E
Sbjct: 246 ELCEQTCVGNTYFATQYGRECWCGSAGADYASHGESADCTYACAGDADETCGGFDAANVYLYTGESTPSPTPSPTADESGPLSLGCYEDDRENRIMDDLALSDFSMTTE--LCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALSTS----------------TFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRE 471
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI) HSP 1 Score: 184 bits (467), Expect = 2.170e-53 Identity = 101/209 (48.33%), Postives = 129/209 (61.72%), Query Frame = 1
Query: 1 QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQYVDSSPYD----LGCYTDSQNGRIMTIKLTDPG-MTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTDS 612
+LC TCAGS +F TQYG EC+CG TDY+++GESTECT+ C G+ D CGG A +VY Y P +GC+ D Q+ RIM + LT+ MTT+ LCE TCAGS++F TQYG EC+CG TD+++HGESTECT C G+ DE CGG A +VY Y + PT P + +GC+ D +RIM L LTDS
Sbjct: 153 ELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTESSSMTTE--LCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPT----------------PTFSYVGCFQDD-QDRIMELALTDS 341
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE) HSP 1 Score: 189 bits (480), Expect = 3.590e-52 Identity = 108/241 (44.81%), Postives = 135/241 (56.02%), Query Frame = 1
Query: 1 QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQYVDS-------SPYD------LGCYTDSQNGRIMT-IKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMT-LILTDSEMTTELCEASCEGSAFFGTQYG 678
+LC TC G+ +F TQYG EC+CG DY +GEST CT++C GDAD CGG +A NVY+Y SP + LGCY D + RIM + L+D MTT EC+CG D+ HGEST+CT C GDAD+ CGG +A NVY+Y S PTP+P + +A LGCY D +RIM L+L+DS MTTELCE +C GS +F TQYG
Sbjct: 497 ELCELTCLGNTYFATQYGSECWCGSAGADYAVHGESTICTYACSGDADQTCGGYDAANVYRYTAEGTPSPTPSPTEAGSHLALGCYEDDREARIMDELVLSDSSMTT---------------------ECWCGSAGADYALHGESTDCTYPCAGDADQMCGGFDAANVYRYTDGS--TPSPTPSPTEAGSHLA-----LGCYEDDREDRIMDELVLSDSSMTTELCELTCVGSTYFATQYG 709
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.350e-44 Identity = 91/227 (40.09%), Postives = 124/227 (54.63%), Query Frame = 1
Query: 4 LCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQYVDSSPYDLGCYTDSQNGRIMTIKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTDSEMTTELCEASCEGSAFFGTQYGIE 684
+C CA SAF+GTQY EC+CGD DYD GE C +C GD+ CGG A++VY+ D S Y LGCY+D + RI + T MT+++ C C ++GTQY +C+CGD A D+D +G EC +AC GDA E CGG M+VY+ P+ P LGCY+D RI L+ T +MT+E+C +C ++GTQY +
Sbjct: 42 VCSVLCASSAFYGTQYSSECWCGDNV-DYDANGEGV-CDMACSGDSSQTCGGFYAMSVYENPDDSGY-LGCYSDPADSRIFELVATSDDMTSEI--CLGNCGAYQYYGTQYSTQCWCGDNA-DYDANGAG-ECDMACSGDASEICGGFYTMSVYENVD-----------------PVDPSY--LGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQ 242
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 155 bits (391), Expect = 3.520e-41 Identity = 87/162 (53.70%), Postives = 101/162 (62.35%), Query Frame = 1
Query: 208 LGCYTDSQNGRIM-TIKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAP-PAPIAPGVTDLGCYTDTPSERIMT-LILTDSEMTTELCEASCEGSAFFGTQYGIE 684
LGCY D RIM + L+D MTT+ LCE TC GS +F TQY EC+CG D+ HGEST CT AC GD + CGG NA NVY Y S PTP+PI P+P LGCY D P +RIM L+L+DS MTTELCE +CEGS +F TQYG E
Sbjct: 200 LGCYEDDPEDRIMDNLALSDSSMTTE--LCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDS--TPSPTPSPIQEGPSPA------LGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRE 351
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI) HSP 1 Score: 149 bits (375), Expect = 7.880e-41 Identity = 85/230 (36.96%), Postives = 123/230 (53.48%), Query Frame = 1
Query: 4 LCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAA-CGGVNAINVYQY-VDSSPYD-LGCYTDSQNGRIMTIKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTDSEMTTELCEASCEGSAFFGTQYGIE 684
+C CA A++GTQYG EC+C + DY Q G + C + C G D CGG +A+++ Q+ VD++P + LGC++D + RI + + MT +V C C+ ++GTQY EC+CGD T +D +G S EC + C GDA E CGG +M+VYQ P + P GCY+D + R+ + EMT + C C SAF+GTQY +
Sbjct: 5 VCEGLCANYAYYGTQYGTECWCDEGTADYAQNGLAV-CDYECAGSTDGEFCGGFDAMSIRQHEVDTNPDNYLGCFSDPADNRIFELVTSSDDMTEEV--CSGHCSAYPYYGTQYSTECWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQNDVEIP---------------VDPAYR--GCYSDPGTNRVFVQDASSDEMTADQCATQCADSAFYGTQYSSQ 214
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.730e-40 Identity = 78/169 (46.15%), Postives = 96/169 (56.80%), Query Frame = 1
Query: 1 QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAACGGVNAINVYQ--------------YVDSSPYDLGCYTDSQNGRIMTIKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVY 465
Q C CA A++GTQYG EC+CG+ YD GEST+C+F C GDA CGG NA++VY + P LGCY DSQ RI + MT + C CA A++GTQYG EC+CG+ +D GEST+C C GDADE CGG NAM+VY
Sbjct: 2 QFCADFCAEYAYYGTQYGEECWCGNSG--YDTLGESTDCSFGCSGDAGETCGGFNAMSVYSTGSDPVETPTPVAVIEPTDPTYLGCYVDSQTDRIFPVTTASDVMT--LAFCADFCAEYAYYGTQYGEECWCGNSG--YDTLGESTDCNYDCSGDADETCGGFNAMSVY 164
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI) HSP 1 Score: 153 bits (387), Expect = 3.880e-39 Identity = 86/165 (52.12%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 196 SPYDLGCYTDSQNGRIMT-IKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMT-LILTDSEMTTELCEASCEGSAFFGTQYGIE 684
SP LGCY D + RIM + L+D MTT+ LCE TC G +F TQYG EC+CG D+ HGEST+CT AC GDAD+ CGG +A NVY Y + S PTP+P A A G LGCY D +RIM L L+D+ MTTELCE +C G+ +F TQYG E
Sbjct: 524 SPLALGCYEDDREDRIMDDLALSDNAMTTE--LCELTCNGQTYFATQYGRECWCGSAGADYTLHGESTDCTYACVGDADQTCGGFDAANVYLYAAES--TPSPTPSPTADDA----GPLALGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNIYFATQYGQE 680
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI) HSP 1 Score: 142 bits (357), Expect = 9.970e-37 Identity = 78/164 (47.56%), Postives = 94/164 (57.32%), Query Frame = 1
Query: 199 PYDLGCYTDSQNGRIMT-IKLTDPGMTTKVTLCETTCAGSAFFGTQYGIECFCGDEATDFDQHGESTECTVACGGDADEQCGGLNAMNVYQYGSSSPTFTRPTPAPIAPPAPIAPGVTDLGCYTDTPSERIMTLILTDSE-MTTELCEASCEGSAFFGTQYGIE 684
P LGCY D + RIM + L+D MTT+ LCE TC GS +F TQYG EC+CG D+ HGEST+CT AC GDAD+ CGG +A NVY Y S + +GCY D RIM L LTDS M+ E+CEA C G+ +FG QYG E
Sbjct: 204 PLALGCYGDDREDRIMDDLALSDYSMTTE--LCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISA-----------------FVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRE 348 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3793.9950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3793.9950.1 >prot_H-paniculata_contig3793.9950.1 ID=prot_H-paniculata_contig3793.9950.1|Name=mRNA_H-paniculata_contig3793.9950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp QLCRTTCAGSAFFGTQYGIECFCGDEATDYDQYGESTECTFSCGGDADAAback to top mRNA from alignment at H-paniculata_contig3793:5620..7528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3793.9950.1 ID=mRNA_H-paniculata_contig3793.9950.1|Name=mRNA_H-paniculata_contig3793.9950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1909bp|location=Sequence derived from alignment at H-paniculata_contig3793:5620..7528- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3793:5620..7528- >mRNA_H-paniculata_contig3793.9950.1 ID=mRNA_H-paniculata_contig3793.9950.1|Name=mRNA_H-paniculata_contig3793.9950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig3793:5620..7528- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |