mRNA_H-paniculata_contig37929.9949.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37929.9949.1
Unique NamemRNA_H-paniculata_contig37929.9949.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: D7FXT2_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.570e-12
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAK 108
            AL+EL RLPPQ YCTGWV HQVGRAYFERADY  AK
Sbjct:  102 ALQELGRLPPQQYCTGWVLHQVGRAYFERADYGNAK 137
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A6H5JEK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-12
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAK 108
            AL+EL RLPPQ YCTGWV HQVGRAYFERADY  AK
Sbjct:  657 ALQELGRLPPQQYCTGWVLHQVGRAYFERADYGNAK 692
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: W4GTV5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTV5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAKVRFVAGCVIRPAR 147
            AL  L+ LPP H  T WVQHQ+GRAYFE A YP+A + F     + P R
Sbjct:  277 ALTGLQSLPPHHIQTSWVQHQMGRAYFELAQYPQAAMAFERMRALSPDR 325
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A4D9D1W2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.460e-7
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   13 LERLPPQHYCTGWVQHQVGRAYFERADYPRAK 108
            L RLPP  + TGWVQH +G+A+FE ADYPRA+
Sbjct:  522 LRRLPPCQFYTGWVQHMLGKAFFEMADYPRAQ 553
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A7S0FBT8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0FBT8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.100e-7
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRA 105
            AL+ L  L P  Y TGWVQHQ+G++YFE ADYP A
Sbjct:  498 ALQILHYLSPDQYETGWVQHQIGKSYFEMADYPNA 532
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A7S4QN69_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QN69_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.360e-7
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAK 108
            AL+   +LP Q + TGWVQHQVGRAYFE ADY  +K
Sbjct:  701 ALQIFHQLPFQQFNTGWVQHQVGRAYFEMADYQNSK 736
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A8C4QC11_EPTBU (Cell division cycle 27 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QC11_EPTBU)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAKVRF 117
            A++  E+LPPQHY TGWV  Q GRA+FE ADY +A+  F
Sbjct:  395 AVRLFEQLPPQHYRTGWVLSQHGRAHFELADYSQAEKVF 433
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A329SZ05_9STRA (Cell division cycle protein 27 A n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SZ05_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAKVRFVAGCVIRPAR 147
            AL+ LE LP     +GW Q Q+GRAYFE ADY RA+  F A     P R
Sbjct:  383 ALEMLEMLPASQRASGWAQQQIGRAYFEMADYVRAQEVFCASHRAEPHR 431
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A8J5J8J8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J8J8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 25/49 (51.02%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAKVRFVAGCVIRPAR 147
            AL+ LE LP     +GW Q Q+GRAYFE ADY RA+  F A     P R
Sbjct:  328 ALEMLEMLPASQRASGWAQQQIGRAYFEMADYVRAQEVFCASHRAEPHR 376
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BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Match: A0A7S0KAY9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAY9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.910e-6
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAK 108
            ALK  ++LP +H+ TGWVQ Q+G+AYFE  DY  AK
Sbjct:  120 ALKLFKKLPTKHFRTGWVQLQIGKAYFEMVDYRNAK 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37929.9949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT2_ECTSI1.570e-1283.33Putative subunit of the Anaphase Promoting Complex... [more]
A0A6H5JEK2_9PHAE1.650e-1283.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4GTV5_9STRA2.660e-853.06Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A4D9D1W2_9STRA4.460e-765.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0FBT8_9STRA6.100e-762.86Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
A0A7S4QN69_9STRA8.360e-763.89Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A8C4QC11_EPTBU1.560e-658.97Cell division cycle 27 n=1 Tax=Eptatretus burgeri ... [more]
A0A329SZ05_9STRA2.140e-651.02Cell division cycle protein 27 A n=3 Tax=Phytophth... [more]
A0A8J5J8J8_9STRA2.140e-651.02Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A7S0KAY9_9STRA2.910e-658.33Hypothetical protein n=2 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37929contigH-paniculata_contig37929:1742..1891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue9.7e-10
Seed eggNOG ortholog2880.D7FXT2
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.metaphase/anaphase transition of mitotic cell cycle
EggNOG OGsCOG0457@1,KOG1126@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930164.4598787-CDS-H-paniculata_contig37929:1741..18911622930164.4598787-CDS-H-paniculata_contig37929:1741..1891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37929 1742..1891 -
1691481173.482414-CDS-H-paniculata_contig37929:1741..18911691481173.482414-CDS-H-paniculata_contig37929:1741..1891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37929 1742..1891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37929.9949.1prot_H-paniculata_contig37929.9949.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37929 1742..1891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37929.9949.1

>prot_H-paniculata_contig37929.9949.1 ID=prot_H-paniculata_contig37929.9949.1|Name=mRNA_H-paniculata_contig37929.9949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
ALKELERLPPQHYCTGWVQHQVGRAYFERADYPRAKVRFVAGCVIRPAR*
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mRNA from alignment at H-paniculata_contig37929:1742..1891-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37929.9949.1 ID=mRNA_H-paniculata_contig37929.9949.1|Name=mRNA_H-paniculata_contig37929.9949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig37929:1742..1891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGAAGGAGCTCGAACGTCTCCCCCCACAGCATTATTGCACCGGCTG
GGTGCAGCACCAGGTTGGTCGCGCATACTTCGAGAGGGCGGACTACCCTA
GAGCGAAGGTGCGTTTCGTGGCGGGGTGTGTGATCAGGCCTGCCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig37929:1742..1891-

>mRNA_H-paniculata_contig37929.9949.1 ID=mRNA_H-paniculata_contig37929.9949.1|Name=mRNA_H-paniculata_contig37929.9949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig37929:1742..1891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGAAGGAGCTCGAACGTCTCCCCCCACAGCATTATTGCACCGGCTG
GGTGCAGCACCAGGTTGGTCGCGCATACTTCGAGAGGGCGGACTACCCTA
GAGCGAAGGTGCGTTTCGTGGCGGGGTGTGTGATCAGGCCTGCCAGGTGA
GCGTTGAAGGAGCTCGAACGTCTCCCCCCACAGCATTATTGCACCGGCTG
GGTGCAGCACCAGGTTGGTCGCGCATACTTCGAGAGGGCGGACTACCCTA
GAGCGAAGGTGCGTTTCGTGGCGGGGTGTGTGATCAGGCCTGCCAGGTGA
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