mRNA_H-paniculata_contig379.9941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig379.9941.1
Unique NamemRNA_H-paniculata_contig379.9941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig379.9941.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.350e-24
Identity = 73/151 (48.34%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:   43 EGRTLKKSSTLPTMPKVSLLAPVGQRPKAGRKSVQFQV------------------PDNEGLDSDNSDSPQPEFLSNPDIRFEVVSTDRASMTEVLNQLRGALKRAT-NTENGFTASSES-----SASAT------LSRMRPSRPGGRSVT 405
            E R +KK++TLP MP+VSLL P   RPK GRKSVQFQV                  P+NEGLDSD +DSP PEFLSNPD+RFEV   DRA++   L +LR ALK+AT ++E+ FT S  +     +A+A       +SRM  S P G +V+
Sbjct:  558 EARLMKKAATLPAMPRVSLLLP-SNRPKGGRKSVQFQVGIMRCDRVVVQCTATAVVPENEGLDSDTTDSPLPEFLSNPDVRFEVAPGDRAALRAALERLRDALKQATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSPSGGTVS 707
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BLAST of mRNA_H-paniculata_contig379.9941.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.090e-21
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:   43 EGRTLKKSSTLPTMPKVSLLAPVGQ---RPKAGRKSVQFQVPDNEGLDSDNSDSPQPEFLSNPDIRFEVVSTDRASMTEVLNQLRGALKRAT-NTENGFTAS 336
            + R   K+S +     + ++    Q   RPK GRKSVQFQVP+NEGLDSD +DSP PEFLSNPD+RFEV   DRA++   L QLR ALKRAT ++E+ FT S
Sbjct:  133 QAREQAKASRITRAASIDMIGSASQDFKRPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALEQLRDALKRATISSESSFTIS 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig379.9941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LG27_9PHAE6.350e-2448.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB0_ECTSI4.090e-2154.90NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig379contigH-paniculata_contig379:766..5809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog2880.D8LRB0
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Exons3
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig379.9941.1prot_H-paniculata_contig379.9941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig379 767..5809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.0674517-CDS-H-paniculata_contig379:766..10011622930163.0674517-CDS-H-paniculata_contig379:766..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 767..1001 -
1691481173.1129055-CDS-H-paniculata_contig379:766..10011691481173.1129055-CDS-H-paniculata_contig379:766..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 767..1001 -
1622930163.0828667-CDS-H-paniculata_contig379:2154..22881622930163.0828667-CDS-H-paniculata_contig379:2154..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 2155..2288 -
1691481173.1314228-CDS-H-paniculata_contig379:2154..22881691481173.1314228-CDS-H-paniculata_contig379:2154..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 2155..2288 -
1622930163.0969567-CDS-H-paniculata_contig379:5656..58091622930163.0969567-CDS-H-paniculata_contig379:5656..5809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 5657..5809 -
1691481173.1503325-CDS-H-paniculata_contig379:5656..58091691481173.1503325-CDS-H-paniculata_contig379:5656..5809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig379 5657..5809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig379.9941.1

>prot_H-paniculata_contig379.9941.1 ID=prot_H-paniculata_contig379.9941.1|Name=mRNA_H-paniculata_contig379.9941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
PGEGGGGGGVGIGGEGRTLKKSSTLPTMPKVSLLAPVGQRPKAGRKSVQF
QVPDNEGLDSDNSDSPQPEFLSNPDIRFEVVSTDRASMTEVLNQLRGALK
RATNTENGFTASSESSASATLSRMRPSRPGGRSVTTSTQNSSSAASLAMG
IGAGVADREVWGSGSSAGGGGGVV
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mRNA from alignment at H-paniculata_contig379:766..5809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig379.9941.1 ID=mRNA_H-paniculata_contig379.9941.1|Name=mRNA_H-paniculata_contig379.9941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5044bp|location=Sequence derived from alignment at H-paniculata_contig379:766..5809- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGAGAAGGAGGGGGCGGGGGGGGAGTTGGGATTGGCGGGGAAGGGCG
CACGCTGAAAAAGTCGTCCACGCTGCCGACAATGCCGAAGGTGTCACTGT
TGGCCCCAGTAGGACAGCGGCCCAAGGCCGGGAGGAAGTCTGTGCAGTTT
CAGGTGGGAATGGTCGTGGTGAAGGTGGTGGTTAAGACGGATCTTCAAGG
GTGTATTCGTGTTTTGCATGTCGTAGTTCTTACAGACCGTTGACTACGCG
TCCTTGGGAGGACGGAGCTCTGTTTCGATCATATCAATTTCCTGATGGCC
AATCGCTCGTTTCCCACGTCGCCAAATGTGGCTCAAAGCTGTTTTGCCTA
CCCTATTTCCCTCAACACTCTCGTGTTAAGGGTCAATGTATTTCTCGTGG
AACCGCTAGCTATATATAGCCTTCTTGTAGCAGTCCCAGAAGTCGAATGC
TTCTTTATCGCATCCTTCATTTTTCACTAATTCGACTCATTTAAATTTAA
ATTTTGACCTCTTTCTCATATTGAGGGCATTTTCCCACATTGTGGATTCG
ATCCTCGCACGCACTATATCGCACTCACGCTTGAACATACCGTAGTCCTC
GTCTATGTTCCTGAAGGGCGTTGCACGTTTTCCTTGAGGTAAAGATATCC
CGTCCTCAAATTTGACTCTCAACTTTGCGTTCCTGCGTCTAATGGTTCAT
GTCGGTAACCCTTTTATCTGTAGTTGCTCGTATTCTCAGCCCTTGTTTTG
TTTTGTTTTTTAACCCCCAAAAGGCTAATGCAAAAACCTCTATCCGATGC
TTCCATACCGAAGTATTTTGTACATTTCCTTTAACAGAACAGAGATATTT
ATTCCTCTGTGGGGTAGGCGCCACCCCGGTTCTGCCGATTCAATTAGGCA
GTGTGCGGGTTGCGCCCACTAAAAGACCTCTGACTAGACTTCCAGTCATG
CTCAGTTCACGAGCTACCCTACCGGTTCGGGCGTAGGTCCGTGGGGATCG
CTGAGATTACTCCGTTATAGCTGCAATTGCGCTTGCTAATTTCTCCTTTC
AATTACCATGTTATTCCTCTTGATCGTCTCCTCTTGAAAAAATCCTATTA
TTTCCACACCTTCTCTACAACCGGGGGGGGGGGGGGGGGGGCTTCGGTCA
ACCCGCGTGCCACAGTTAATAGAACTATAGCGCTCGTATAATCACTCCGT
TACACTTACCTATGTTGATACCATGTAGCTGGCTTCAACCTTCAGTTGTG
TACGGTTGTGAAGCAAAATTAGGTCAATAAGGATGGGGGGCGGGGGGGGG
GCTTGTCAGGTGAGCGCAAATTGATCTGATTTCATGTTGTGGTGTGCTAT
AGAAATGCTCGGTATTTTACTGCCGTATCCAGCGTTACTTGGGGTAAGTA
TAGTCTGGGTTACAGTATGTGTTCATATGGCCTGAATACAGTCAATCCTA
TTCTCGCAGTACCTCAGTATTAATCACGGTAGTTTGTACCCATAATGCTG
TGTAGTCGTGGCAATGCAACGGTATCACTATATCTTGAAATGCTCGACAT
TATTTTTAAGTTGTATTGTGTATCCACCTGTGAAACGTCCCCGCTTTTTT
GCTCTAAAAGGCGTTTGGAAACTTTTTTTTTTTTTTTTCAATCAATGCTC
ATGAATCATGACACATGTATTCATAATAGCGTTGAAAATTATGATACAGT
CAGTGTCAGCAGATTTAAATGGCCTCGATTCCTTGAACACTGAGAAATTT
AGGTTGTAATGCTGCACGAGCCAAACGTCAACTTTTGCATTGTTTGTTTT
TTCGGCTTTTTTGTTTTCTTTATGGCGTACTTATTACAAGAAAGTTCTAG
AAGGAATGGAAGAAAAAAAAAAATCATACTGGTATCAAGTAAAAATTCAT
GAAACGTCACAGCTACTCCGCAGACGAATAAATAACTCTGTTTTGTTAAA
GGAAATGTAGACATACTTTGGTAAAAGTACTTGGGTATGGAAGCATCGGT
AAAGGTTTTTGCCTCAGCCTTCCGGGGCTTTAAAAAAAAAAAAAAAACGT
CACGGCTACTCAAGGGAAGTGAGTACTCAAACGGATGGCACAGCTTTGAA
GAAGGAAGGATCTAGTGTGCGCTACTGTACAGTAGGTGGTCATATATAAG
GTACTTACGTACTACAATGGCAGCGGAAAAAGGTACACTATTCACTGTAA
GAAGTAGTTCATTATATATGATGCAAAAACGGATCCCCCAGTCCAAAATC
CTGATGTTATCAAAAAGAGATGTCGGCGAATTTGGGTATCTTACTTCTTC
TTTTAACATGTTATTTTTATAGGGGGTACCTAATTCATTTATAGTGTAAT
ACATCCAATAGGGAGTGCGAGTACTGTCGCATTATTATTATGTTATTATT
CACACATTAGCCCGATCCCCCAGACCCGTGGGCGCAAGGTAAATGGCGAA
CCAGTGGAACTACAACAATATATATATATACGGTAACAAAATTTAGCAAT
AAAAAGGAGTAGAGCCCTAAAAAATGGGGAAGACACGTCAGAAATATTTC
GCGGAAGAGATGAACAAACCCGCGAAAACTAACAGAAACAGTGAACCAAG
GCAAAACGAAAGCTAAAGACAACGCCAAAGCAAAAGACATAACGTGCCAA
GATCACACCGTCCATCAGGGTGGGCCGTCTGCAGAGGAAGGCAACAAGGC
AAAGAACTCTCGCGTGTAATGGGCGTGAGTCGTCGCTACCTCGACTCTGT
TCTCATGCAGTGTATTTTCATATATATGTATTTTTATTTTTTTCCTGCCT
CTTGAAAACTTGGTAGGCCCTCGGCGATTATATTGAAATCTTAGTATGAA
TAATTGGTATATATATCTATGTATCTATATATATATCTATATATCTATAT
ATATTGTGTTGTTTTCCTGCATAAAGTGTAAAACTGAAGTATTTTGTCAA
ATCAATATGATCATGACAGGAGAAATCCATCAACTTATTTTTTGTTTTTT
GGTCAAATTCATAGATGTGAAATTTTACTCCTGTTGACTTAAATAGGTTG
GTTTTCCTGACTGCAGACGTGTGATGGATTGATTCTACACTAACAGTTAG
TATATTATAGAGATACAGCCCGAACACAATACGGCAGACTTGGCCCGCGT
TGAATGCTGCACGAATCAACCGTGAACTTCACTCACGAAATGTAATGATC
AAGTAGGATAAATATTGAATTACATTGACATACTTGCCTCTTATTGATTT
GATTTTGCTGATACTATCGTTTACGAAGACTTTGTATAGAAACAATAACG
ATATCCCCTGAAAAAGCAGCAGCATTCCTTGATTTACCTTGAACTTGAAT
ACAACGAGCAGTTTTGCCACCACAATTATCGACAACATCTAAAAGAAGTT
TGAGCTCGAATCATATATCTGATTTACTTCTAGCTGGATTTGAACCAACA
TGTCAAAAGACAAAAGATATTGAATCTACCGTGTTTACCAATTCCACCCC
CCCCCCCCGTCCTTATCCCAGGTACCGGATAATGAGGGCTTGGATTCAGA
CAACTCCGACTCGCCCCAGCCCGAGTTCCTGTCCAATCCAGACATACGGT
TCGAGGTGGTGTCTACGGACAGGGCTTCTATGACCGAGGTCCTCAATCAG
CTCAGGTGTGTTGGAGAAAAAAAAAAGAACTTTTTTTTCGTGGCGTTTCT
GAGCGCGTAGCGACGAGTAAACGGGGGAGGACGGGGGATAGCCTACAATA
ATTGTCACTATCAGTAGAGGATGACCACGGCTAGGCCCGTGCGGTTCGTG
CTTACTTATTCCCGATCCACAAACTCGCTGAGTTCGCATCAAGCTTATTT
TTTTTCGGAGTTGCTCGACAGAATCGGAAAGCTGATTCGAAACGATGACA
CGTAGGCAGCTTTATATACGTACAATGTGCCCCTGTATAAGTAGTAGGAT
ATTACAGTGAGTAATTTACCTCAAACTTTTCCCCCGACATGGGGATCCGG
TATAGGGGGACCCTCATTTGAGGAAAGTGTTGATGGTACTCACAGTAAGG
AAGGTATCGCTTTTCCGGCGTGGTAATGGTATGTGTACCTTATGTTGGGC
AACTTCTGGCTATCGAGATATTGGTGCATGGTCGTCGCTTTGAGATGTAT
ACCTGATGAAATTCCCTTTGGAAGAGTATACAAGTGGTGTGTGTAGAGTG
AAATGCATAACCTCGATATGGGGTACAATAGAGCTATATATATATATGAG
GTTCATAAGTCATAATCCAACTGACAGGTAGGGTGATTTTGCTAGAGTAA
TGATAGTGTCAGTAACGACTTTTCGGGGGGTTAGTCGTTCATATGATGGC
TATTTGTCACTGTTCCTACAGTAGATATGCGAGTGATAGAGGAGTACTCC
CGTGTTAAGGTTGCCGTAGTCCATGTCGTGCGTGGTCGAAGAGGCGCGAG
AAGTTTCGGTATTAGGTCATGATAGGGTCAGAACTTTGGTCTTGTGAACA
GAATTATTCCCCCCCCCCCTCCACCAACAAACACGAAATACTAGAGACAG
CGTTCCTAACGAATTTTGAAAAAAAGAAATATATATATATTGAGTTTATA
TCATGTTTAGGAAAATAAAAATAATTTGTAGACGTACTGGTAGATATATC
GGCTTCCGATTTTTTATTTTTTTTTTTACCCCCTGAAGGCTAAGGCAAAA
ACCTCTATCCGATATCGGCTTCCGAGTTGATAAAAAGTTGACTATATACC
TACCCTTCTCTCACCTATATTTATGGATGCAACGCAATGCAATGCATGCA
CACAACAGGGGGGCCCTCAAGCGCGCTACGAACACAGAAAATGGATTCAC
GGCCTCCTCTGAATCGAGCGCAAGCGCAACGCTCTCTAGAATGCGGCCGT
CGCGTCCGGGCGGACGATCTGTGACAACCTCTACCCAGAACTCGTCGAGT
GCTGCGTCGCTCGCGATGGGGATAGGGGCAGGAGTGGCGGACCGGGAAGT
GTGGGGCAGTGGTAGCAGTGCTGGTGGTGGCGGCGGTGTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig379:766..5809-

>mRNA_H-paniculata_contig379.9941.1 ID=mRNA_H-paniculata_contig379.9941.1|Name=mRNA_H-paniculata_contig379.9941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig379:766..5809- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGAGAAGGAGGGGGCGGGGGGGGAGTTGGGATTGGCGGGGAAGGGCG
CACGCTGAAAAAGTCGTCCACGCTGCCGACAATGCCGAAGGTGTCACTGT
TGGCCCCAGTAGGACAGCGGCCCAAGGCCGGGAGGAAGTCTGTGCAGTTT
CAGCCGGGAGAAGGAGGGGGCGGGGGGGGAGTTGGGATTGGCGGGGAAGG
GCGCACGCTGAAAAAGTCGTCCACGCTGCCGACAATGCCGAAGGTGTCAC
TGTTGGCCCCAGTAGGACAGCGGCCCAAGGCCGGGAGGAAGTCTGTGCAG
TTTCAGGTACCGGATAATGAGGGCTTGGATTCAGACAACTCCGACTCGCC
CCAGCCCGAGTTCCTGTCCAATCCAGACATACGGTTCGAGGTGGTGTCTA
CGGACAGGGCTTCTATGACCGAGGTCCTCAATCAGCTCAGGTACCGGATA
ATGAGGGCTTGGATTCAGACAACTCCGACTCGCCCCAGCCCGAGTTCCTG
TCCAATCCAGACATACGGTTCGAGGTGGTGTCTACGGACAGGGCTTCTAT
GACCGAGGTCCTCAATCAGCTCAGGGGGGCCCTCAAGCGCGCTACGAACA
CAGAAAATGGATTCACGGCCTCCTCTGAATCGAGCGCAAGCGCAACGCTC
TCTAGAATGCGGCCGTCGCGTCCGGGCGGACGATCTGTGACAACCTCTAC
CCAGAACTCGTCGAGTGCTGCGTCGCTCGCGATGGGGATAGGGGCAGGAG
TGGCGGACCGGGAAGTGTGGGGCAGTGGTAGCAGTGCTGGTGGTGGCGGC
GGTGTGGTGGGGGGCCCTCAAGCGCGCTACGAACACAGAAAATGGATTCA
CGGCCTCCTCTGAATCGAGCGCAAGCGCAACGCTCTCTAGAATGCGGCCG
TCGCGTCCGGGCGGACGATCTGTGACAACCTCTACCCAGAACTCGTCGAG
TGCTGCGTCGCTCGCGATGGGGATAGGGGCAGGAGTGGCGGACCGGGAAG
TGTGGGGCAGTGGTAGCAGTGCTGGTGGTGGCGGCGGTGTGGTG
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