mRNA_H-paniculata_contig37874.9939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37874.9939.1
Unique NamemRNA_H-paniculata_contig37874.9939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.400e-19
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   31 CISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYK 177
            C+S+    HTCLSKSLESDCPICN S+FTSTSQVKGL CGHFMHL CYK
Sbjct:  964 CVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYK 1012
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A6T6KU80_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6KU80_9RHOD)

HSP 1 Score: 82.0 bits (201), Expect = 2.380e-18
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCY 174
            DFFHCM CNAC+SL    H C+ K +ES+CPICN  +F+ST+ +K L CGH MH  CY
Sbjct:    8 DFFHCMKCNACLSLSRREHKCIEKVMESNCPICNNYLFSSTTPIKYLLCGHLMHKHCY 65
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A251QGF8_PRUPE (Uncharacterized protein n=9 Tax=Prunus TaxID=3754 RepID=A0A251QGF8_PRUPE)

HSP 1 Score: 83.2 bits (204), Expect = 3.530e-17
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYKVC 183
            D+FHCMTCN C+ +G   H C  K LE++CPICN  +FTST+ ++ L CGHFMH  C + C
Sbjct:  743 DYFHCMTCNCCLGIGLVNHKCREKCLETNCPICNEFLFTSTASIRALPCGHFMHSACLEAC 803
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A2P6SC03_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SC03_ROSCH)

HSP 1 Score: 83.2 bits (204), Expect = 3.530e-17
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYKVC 183
            D+FHCM+CN C+ +    H C  K LE++CP+CN  +FTS+S++K L CGH MHL C+K C
Sbjct:  861 DYFHCMSCNCCMGMASVNHKCQEKCLETNCPVCNEFLFTSSSRIKALPCGHCMHLACFKTC 921
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A7S4R513_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R513_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-17
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCY 174
            D+ HCM CNAC+SL +  H C+ +SL+ +CPIC+ SMF ST  ++GL CGH MHL C+
Sbjct:  136 DYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCF 193
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A3S3MJM9_9MAGN (Zinc finger protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MJM9_9MAGN)

HSP 1 Score: 82.8 bits (203), Expect = 4.840e-17
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYKV 180
            D+FHCM CNAC+S   +VH CL K  ES+CPIC+  +FTS+S VK L CGH MH  C++V
Sbjct: 1161 DYFHCMNCNACLSKSLAVHICLEKCFESNCPICHDDIFTSSSPVKALPCGHLMHSTCFQV 1220
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A7J7CL25_TRIWF (Uncharacterized protein n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CL25_TRIWF)

HSP 1 Score: 82.0 bits (201), Expect = 9.010e-17
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYKV 180
            D+FHCM CNAC+S   SVH C+ K LE +CPIC+  +FTS+S VK L CGH MH  C++V
Sbjct: 1112 DYFHCMKCNACMSRSLSVHICIEKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSACFQV 1171
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A6U3SMK8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMK8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.340e-16
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCY 174
            D+ HCM CNAC+SL +  H C+ +SL+ +CPIC+ SMF ST  ++GL CGH MHL C+
Sbjct:  266 DYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCF 323
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BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A7S4VUG9_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUG9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-16
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCY 174
            D+ HCM CNAC+SL +  H C+ +SL+ +CPIC+ SMF ST  ++GL CGH MHL C+
Sbjct: 1003 DYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCF 1060
[Close]
BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Match: A0A3P6C2J7_BRACM (Uncharacterized protein n=2 Tax=Brassica TaxID=3705 RepID=A0A3P6C2J7_BRACM)

HSP 1 Score: 77.0 bits (188), Expect = 2.160e-16
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 DFFHCMTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHLRCYK 177
            D+FHCM CNAC++     H C  K LE +CPIC+  +FTS+S VK L CGH MH +C+K
Sbjct:   60 DYFHCMKCNACMARSLKEHVCREKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSKCFK 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37874.9939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L587_9PHAE8.400e-1979.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6T6KU80_9RHOD2.380e-1858.62Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A251QGF8_PRUPE3.530e-1754.10Uncharacterized protein n=9 Tax=Prunus TaxID=3754 ... [more]
A0A2P6SC03_ROSCH3.530e-1752.46Putative aminoacyltransferase, E1 ubiquitin-activa... [more]
A0A7S4R513_9STRA4.680e-1755.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A3S3MJM9_9MAGN4.840e-1758.33Zinc finger protein n=1 Tax=Cinnamomum micranthum ... [more]
A0A7J7CL25_TRIWF9.010e-1758.33Uncharacterized protein n=3 Tax=Tripterygium wilfo... [more]
A0A6U3SMK8_9STRA1.340e-1655.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VUG9_9STRA1.680e-1655.17Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A3P6C2J7_BRACM2.160e-1654.24Uncharacterized protein n=2 Tax=Brassica TaxID=370... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37874contigH-paniculata_contig37874:66..248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog2880.D7FUX1
KEGG koko:K16276
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG1940@1,KOG1940@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size183
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.71407-UTR-H-paniculata_contig37874:65..801622930162.71407-UTR-H-paniculata_contig37874:65..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37874 66..80 +
1691481172.933126-UTR-H-paniculata_contig37874:65..801691481172.933126-UTR-H-paniculata_contig37874:65..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig37874 66..80 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.7281375-CDS-H-paniculata_contig37874:80..2481622930162.7281375-CDS-H-paniculata_contig37874:80..248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37874 81..248 +
1691481172.9473875-CDS-H-paniculata_contig37874:80..2481691481172.9473875-CDS-H-paniculata_contig37874:80..248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37874 81..248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37874.9939.1prot_H-paniculata_contig37874.9939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37874 81..248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37874.9939.1

>prot_H-paniculata_contig37874.9939.1 ID=prot_H-paniculata_contig37874.9939.1|Name=mRNA_H-paniculata_contig37874.9939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MTCNACISLGESVHTCLSKSLESDCPICNASMFTSTSQVKGLNCGHFMHL
RCYKVC
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mRNA from alignment at H-paniculata_contig37874:66..248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37874.9939.1 ID=mRNA_H-paniculata_contig37874.9939.1|Name=mRNA_H-paniculata_contig37874.9939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig37874:66..248+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTTTTTCACTGCATGACTTGCAACGCGTGCATCTCGTTGGGAGAGTC
GGTACACACCTGCTTGAGCAAGAGTCTGGAGAGCGACTGCCCCATCTGCA
ATGCGAGCATGTTCACGTCCACGTCGCAAGTCAAGGGGCTCAACTGCGGG
CATTTTATGCACCTGCGCTGCTACAAGGTATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig37874:66..248+

>mRNA_H-paniculata_contig37874.9939.1 ID=mRNA_H-paniculata_contig37874.9939.1|Name=mRNA_H-paniculata_contig37874.9939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig37874:66..248+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTGCAACGCGTGCATCTCGTTGGGAGAGTCGGTACACACCTGCTT
GAGCAAGAGTCTGGAGAGCGACTGCCCCATCTGCAATGCGAGCATGTTCA
CGTCCACGTCGCAAGTCAAGGGGCTCAACTGCGGGCATTTTATGCACCTG
CGCTGCTACAAGGTATGCATGACTTGCAACGCGTGCATCTCGTTGGGAGA
GTCGGTACACACCTGCTTGAGCAAGAGTCTGGAGAGCGACTGCCCCATCT
GCAATGCGAGCATGTTCACGTCCACGTCGCAAGTCAAGGGGCTCAACTGC
GGGCATTTTATGCACCTGCGCTGCTACAAGGTATGC
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