mRNA_H-paniculata_contig3787.9938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3787.9938.1
Unique NamemRNA_H-paniculata_contig3787.9938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3787.9938.1 vs. uniprot
Match: D7FHL3_ECTSI (Phosphatidylinositol transfer protein PDR16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.280e-11
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 3 
Query:  117 GKVTPDEEGKVASMRDSFPTDATDAAGMIMDDACLVRFLRARKGNVAKATAMLSATLEWRREFNVPKASEK 329
            G +T +E   ++ +R++     T++ G+ +DDA LVR+LRAR+G++ KA AML+ATLEWRREF  P+   K
Sbjct:    4 GAITDEEASLISQVREAHFPSGTESYGLPLDDAVLVRYLRAREGSIEKAAAMLTATLEWRREFGFPEVFSK 74
[Close]
BLAST of mRNA_H-paniculata_contig3787.9938.1 vs. uniprot
Match: A0A8J5X440_DIALT (CRAL-TRIO domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X440_DIALT)

HSP 1 Score: 54.3 bits (129), Expect = 4.430e-5
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 3 
Query:  132 DEEGKVASMRDSFPTDATDAAGMIMDDACLVRFLRARKGNVAKATAMLSATLEWRREFNVPKASEKL 332
            DE  K++S+R    ++    A M +DDACL+R+LRAR  +V KA AML AT+ WR  F      ++L
Sbjct:   51 DEASKISSLRALLSSEPP-CAHMPLDDACLMRYLRARSMDVDKAAAMLRATIAWRHSFGADSIVDRL 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3787.9938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHL3_ECTSI4.280e-1146.48Phosphatidylinositol transfer protein PDR16 n=1 Ta... [more]
A0A8J5X440_DIALT4.430e-543.28CRAL-TRIO domain-containing protein n=1 Tax=Diacro... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3787contigH-paniculata_contig3787:15452..16455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue9.3e-11
Seed eggNOG ortholog2880.D7FHL3
Preferred namePDR16
KEGG rclassRC00151
KEGG koko:K01101,ko:K14399
KEGG ReactionR03024
KEGG Pathwayko00627,ko01120,ko03015,map00627,map01120,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005768,GO:0005811,GO:0005829,GO:0005886,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006694,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008526,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010562,GO:0010563,GO:0010564,GO:0010876,GO:0010948,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016043,GO:0016125,GO:0016126,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0022603,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031982,GO:0033036,GO:0034306,GO:0034613,GO:0042173,GO:0042174,GO:0042221,GO:0042493,GO:0042763,GO:0042764,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043901,GO:0043937,GO:0043939,GO:0043940,GO:0043942,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045595,GO:0045596,GO:0045786,GO:0045833,GO:0045834,GO:0045936,GO:0045937,GO:0046486,GO:0046889,GO:0046890,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051055,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051445,GO:0051447,GO:0051641,GO:0051726,GO:0061024,GO:0061951,GO:0065007,GO:0070727,GO:0071071,GO:0071072,GO:0071073,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090150,GO:0090407,GO:0097708,GO:0098876,GO:0120009,GO:0120010,GO:1901351,GO:1901352,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1903725,GO:1903726,GO:1903727,GO:1990778,GO:2000241,GO:2000242,GO:2001245,GO:2001247
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
EC2.7.1.78,3.1.3.41
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Exons2
Model size704
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3787.9938.1prot_H-paniculata_contig3787.9938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3787 15550..16119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.2802646-UTR-H-paniculata_contig3787:15451..155491622930162.2802646-UTR-H-paniculata_contig3787:15451..15549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3787 15452..15549 +
1691481172.887618-UTR-H-paniculata_contig3787:15451..155491691481172.887618-UTR-H-paniculata_contig3787:15451..15549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3787 15452..15549 +
1622930162.3325663-UTR-H-paniculata_contig3787:16119..164551622930162.3325663-UTR-H-paniculata_contig3787:16119..16455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3787 16120..16455 +
1691481172.920042-UTR-H-paniculata_contig3787:16119..164551691481172.920042-UTR-H-paniculata_contig3787:16119..16455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3787 16120..16455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.2975712-CDS-H-paniculata_contig3787:15549..155971622930162.2975712-CDS-H-paniculata_contig3787:15549..15597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3787 15550..15597 +
1691481172.9001434-CDS-H-paniculata_contig3787:15549..155971691481172.9001434-CDS-H-paniculata_contig3787:15549..15597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3787 15550..15597 +
1622930162.3202002-CDS-H-paniculata_contig3787:15897..161191622930162.3202002-CDS-H-paniculata_contig3787:15897..16119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3787 15898..16119 +
1691481172.9112504-CDS-H-paniculata_contig3787:15897..161191691481172.9112504-CDS-H-paniculata_contig3787:15897..16119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3787 15898..16119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3787.9938.1

>prot_H-paniculata_contig3787.9938.1 ID=prot_H-paniculata_contig3787.9938.1|Name=mRNA_H-paniculata_contig3787.9938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MPDFMDGKVTPDEEGKVASMRDSFPTDATDAAGMIMDDACLVRFLRARKG
NVAKATAMLSATLEWRREFNVPKASEKLRGTVLLFPEVL*
back to top

mRNA from alignment at H-paniculata_contig3787:15452..16455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3787.9938.1 ID=mRNA_H-paniculata_contig3787.9938.1|Name=mRNA_H-paniculata_contig3787.9938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1004bp|location=Sequence derived from alignment at H-paniculata_contig3787:15452..16455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATAAACAGATGTTTTCGAATTGCTCTACACAGGAACAGTTGATCGGTT
GCACGGCGATTACTGCTTTGCAACGTGACGTACGGAAAAACGTAAAATAT
GCCTGATTTTATGGACGGGAAAGTGACACCAGACGAGGAGGGCAAGGTGA
GTGTCATGCCTCGGTATCAGAAAGGTGAACGAAATCTATTAACCGTCTTG
TATCTCTCTCCTTATATTTAGTGGTAATATATGTGATTCATCAGAGCTGA
GACGAGCATGCAATGCTGTGCGGAATACCCAATTGCAGCCGATGCGCCGT
CGAAGTGGAAATTCCTTCGAGAACGACGAGTGGCTAGCAGATCAAGGTAC
ATGATACTGTGAAAAACAAACACCTTACTCTGCACACATCTCTGTACGAA
CTGATAGTGTTGAATCTTTCTTCGCCCAACCCGCACCCTACTGTAGGTCG
CGTCAATGCGGGATTCGTTTCCGACGGACGCGACCGACGCGGCCGGGATG
ATCATGGATGATGCATGCCTGGTGAGGTTCCTTCGAGCAAGGAAGGGTAA
CGTGGCGAAGGCGACAGCGATGCTTTCGGCGACGCTCGAATGGCGACGCG
AATTCAATGTTCCAAAGGCGAGTGAAAAGCTACGGGGTACTGTGCTGCTC
TTTCCTGAGGTGCTGTGAGGACGTCTGGCCTGTACCCACATGGAAAGAGA
GGTTGTAATTCTCCACCTTCAAATTCTGAACAAGTCGCAGCACTGCAAGC
CGGCTGTATTGTACTTTTCTGCGGTAGTGGGCATCAGCTCCATAAGCCTT
GCATGTTTCGGTATGGGGGATCGCTAGCCGTCGCGGTTTTAGTGTACTTG
ACGCTGGTTGTCGCGTTCATGTCGTATATTTCTAGTTGGGCCTGATCCCA
AGTGTGTTCTTTCCCCGTGCGGGTCTTTTCGGCGGAGAATGGCATGAATG
ACAGGTGCCGCTGTATCCGTATCCGTCGTCGGAGATGGTCCGAGTTCATG
AATA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3787:15452..16455+

>mRNA_H-paniculata_contig3787.9938.1 ID=mRNA_H-paniculata_contig3787.9938.1|Name=mRNA_H-paniculata_contig3787.9938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig3787:15452..16455+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGATTTTATGGACGGGAAAGTGACACCAGACGAGGAGGGCAAGAT
GCCTGATTTTATGGACGGGAAAGTGACACCAGACGAGGAGGGCAAGGTCG
CGTCAATGCGGGATTCGTTTCCGACGGACGCGACCGACGCGGCCGGGATG
ATCATGGATGATGCATGCCTGGTGAGGTTCCTTCGAGCAAGGAAGGGTAA
CGTGGCGAAGGCGACAGCGATGCTTTCGGCGACGCTCGAATGGCGACGCG
AATTCAATGTTCCAAAGGCGAGTGAAAAGCTACGGGGTACTGTGCTGCTC
TTTCCTGAGGTGCTGTGAGTCGCGTCAATGCGGGATTCGTTTCCGACGGA
CGCGACCGACGCGGCCGGGATGATCATGGATGATGCATGCCTGGTGAGGT
TCCTTCGAGCAAGGAAGGGTAACGTGGCGAAGGCGACAGCGATGCTTTCG
GCGACGCTCGAATGGCGACGCGAATTCAATGTTCCAAAGGCGAGTGAAAA
GCTACGGGGTACTGTGCTGCTCTTTCCTGAGGTGCTGTGA
back to top