mRNA_H-paniculata_contig37707.9909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 57.8 bits (138), Expect = 1.740e-7 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 4 EIWICDNGATKHMTHNSDFLFDYQQCNG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLG 237
++WI D+GA++HMTH S+++ + Q HV L DG + + G G +++Q D + + L V +VP L+ +L S+G
Sbjct: 286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM) HSP 1 Score: 54.3 bits (129), Expect = 2.880e-6 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 315
I D+GA+ HM + + D ++ G V +A+G+R+PIEGVG L L FD + S ++P + +LLS+ K D G + + + +LKTGRV+
Sbjct: 308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006AB1BB2 (uncharacterized protein LOC106350608 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1BB2) HSP 1 Score: 53.5 bits (127), Expect = 5.610e-6 Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEY 264
+ D+GA+ HM +S + D + NGHV +A+G+++PI G+G L L FD + S+ ++P + +LLS+ K+ G EY
Sbjct: 394 VVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDED------SKAFYMPDFTSNLLSVKKYN--GGEY 466
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5) HSP 1 Score: 52.8 bits (125), Expect = 9.670e-6 Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 315
I D GA+ HM + + D ++ G V +A+G+R+PIEGVG L L FD + S ++P + +LLS+ K D G + + + +LKTGRV+
Sbjct: 264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA) HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5 Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGK 240
I D+GA+ HM + + + D + GHV +A+G+++PI+G+G L L FD E SQ ++P + +LLS+ K
Sbjct: 33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006A74443 (uncharacterized protein LOC106321044 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74443) HSP 1 Score: 52.0 bits (123), Expect = 1.910e-5 Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLS 231
I D+GA+ HM +S + D + NGHV +A+G+++PI G+G L L FD E S+ ++P + +LLS
Sbjct: 394 IVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKE------SKAFYMPDFTSNLLS 457
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH) HSP 1 Score: 51.6 bits (122), Expect = 2.640e-5 Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 1
Query: 10 WICDNGATKHMT-HNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEYRCSR 276
W D G + HM+ H F+ + + + +R+P++G G + +Q + + +S V +VP LSH+LLS+GK ++ G++ R R
Sbjct: 287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFR 373
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A0D2ZX85_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZX85_BRAOL) HSP 1 Score: 50.8 bits (120), Expect = 3.410e-5 Identity = 26/76 (34.21%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGK 240
+ D+GA+ HM ++ + D + NGHV +A+G+++PI G+G L L FD + S+ ++P + +LLS+ K
Sbjct: 144 VVDSGASHHMISDTSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKD------SKAFYMPDFTSNLLSVKK 210
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 3.560e-5 Identity = 25/85 (29.41%), Postives = 47/85 (55.29%), Query Frame = 1
Query: 4 EIWICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGH 258
+IWI DNG+++H+ +++ +L D ++C+ +G L I G + L+ +V+LS V F + H+L+S G+ G+
Sbjct: 292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGY 376
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006AA6A8A (uncharacterized protein LOC106377983 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA6A8A) HSP 1 Score: 50.8 bits (120), Expect = 4.700e-5 Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEYRCS 273
I D+GA+ HM +++ + D + NGHV +A+G+++PI+G+G L L FD ++ SQ + L L K D Y CS
Sbjct: 263 IIDSGASHHMISDTNLIKDIEPTNGHVMIANGDKIPIKGIGNLKL---FDKNTRDIQSSQFIGKGVTKGELYMLEKL-DLVSNYNCS 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig37707.9909.1 >prot_H-paniculata_contig37707.9909.1 ID=prot_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp MEIWICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQback to top mRNA from alignment at H-paniculata_contig37707:1331..1648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig37707.9909.1 ID=mRNA_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig37707:1331..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig37707:1331..1648+ >mRNA_H-paniculata_contig37707.9909.1 ID=mRNA_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig37707:1331..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |