mRNA_H-paniculata_contig37707.9909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37707.9909.1
Unique NamemRNA_H-paniculata_contig37707.9909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 57.8 bits (138), Expect = 1.740e-7
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHNSDFLFDYQQCNG-HVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLG 237
            ++WI D+GA++HMTH S+++ + Q     HV L DG +  + G G +++Q   D + +   L  V +VP L+ +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 54.3 bits (129), Expect = 2.880e-6
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 315
            I D+GA+ HM  +   + D ++  G V +A+G+R+PIEGVG L L   FD +      S   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  308 IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006AB1BB2 (uncharacterized protein LOC106350608 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB1BB2)

HSP 1 Score: 53.5 bits (127), Expect = 5.610e-6
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEY 264
            + D+GA+ HM  +S  + D +  NGHV +A+G+++PI G+G L L   FD +      S+  ++P  + +LLS+ K+   G EY
Sbjct:  394 VVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDED------SKAFYMPDFTSNLLSVKKYN--GGEY 466          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 52.8 bits (125), Expect = 9.670e-6
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 315
            I D GA+ HM  +   + D ++  G V +A+G+R+PIEGVG L L   FD +      S   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  264 IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A1J3DSB6_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DSB6_NOCCA)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 28/76 (36.84%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGK 240
            I D+GA+ HM  + + + D +   GHV +A+G+++PI+G+G L L   FD E      SQ  ++P  + +LLS+ K
Sbjct:   33 IVDSGASHHMISDLNLIKDIKPALGHVSIANGDQIPIKGIGNLKL---FDKE------SQAFYMPSFTSNLLSVKK 99          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006A74443 (uncharacterized protein LOC106321044 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A74443)

HSP 1 Score: 52.0 bits (123), Expect = 1.910e-5
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLS 231
            I D+GA+ HM  +S  + D +  NGHV +A+G+++PI G+G L L   FD E      S+  ++P  + +LLS
Sbjct:  394 IVDSGASHHMISDSSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKE------SKAFYMPDFTSNLLS 457          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 2.640e-5
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   10 WICDNGATKHMT-HNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEYRCSR 276
            W  D G + HM+ H   F+   +     +   + +R+P++G G + +Q +     +   +S V +VP LSH+LLS+GK ++ G++ R  R
Sbjct:  287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFR 373          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A0D2ZX85_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZX85_BRAOL)

HSP 1 Score: 50.8 bits (120), Expect = 3.410e-5
Identity = 26/76 (34.21%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGK 240
            + D+GA+ HM  ++  + D +  NGHV +A+G+++PI G+G L L   FD +      S+  ++P  + +LLS+ K
Sbjct:  144 VVDSGASHHMISDTSLIRDIEPTNGHVMIANGDKIPIRGIGKLKL---FDKD------SKAFYMPDFTSNLLSVKK 210          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.560e-5
Identity = 25/85 (29.41%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    4 EIWICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGH 258
            +IWI DNG+++H+ +++ +L D ++C+      +G  L I   G + L+        +V+LS V F   + H+L+S G+    G+
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGY 376          
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Match: UPI0006AA6A8A (uncharacterized protein LOC106377983 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA6A8A)

HSP 1 Score: 50.8 bits (120), Expect = 4.700e-5
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   13 ICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEYRCS 273
            I D+GA+ HM  +++ + D +  NGHV +A+G+++PI+G+G L L   FD     ++ SQ     +    L  L K  D    Y CS
Sbjct:  263 IIDSGASHHMISDTNLIKDIEPTNGHVMIANGDKIPIKGIGNLKL---FDKNTRDIQSSQFIGKGVTKGELYMLEKL-DLVSNYNCS 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37707.9909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME1.740e-735.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A8D9D973_BRACM2.880e-634.95(field mustard) hypothetical protein (Fragment) n=... [more]
UPI0006AB1BB25.610e-635.71uncharacterized protein LOC106350608 n=2 Tax=Brass... [more]
UPI00142D92C59.670e-634.95uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A1J3DSB6_NOCCA1.340e-536.84Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
UPI0006A744431.910e-538.36uncharacterized protein LOC106321044 n=1 Tax=Brass... [more]
A0A2P6PN01_ROSCH2.640e-530.00Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A0D2ZX85_BRAOL3.410e-534.21Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
A0A225WMA1_9STRA3.560e-529.41CCHC-type domain-containing protein (Fragment) n=1... [more]
UPI0006AA6A8A4.700e-534.48uncharacterized protein LOC106377983 n=1 Tax=Brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37707contigH-paniculata_contig37707:1331..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score66.2
Seed ortholog evalue1e-08
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.6919196-CDS-H-paniculata_contig37707:1330..16481622930158.6919196-CDS-H-paniculata_contig37707:1330..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37707 1331..1648 +
1691481171.2540329-CDS-H-paniculata_contig37707:1330..16481691481171.2540329-CDS-H-paniculata_contig37707:1330..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37707 1331..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37707.9909.1prot_H-paniculata_contig37707.9909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37707 1331..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37707.9909.1

>prot_H-paniculata_contig37707.9909.1 ID=prot_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MEIWICDNGATKHMTHNSDFLFDYQQCNGHVRLADGNRLPIEGVGMLFLQ
FRFDSEVVLVKLSQVAFVPLLSHHLLSLGKFADFGHEYRCSREGLRINLK
TGRVLS
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mRNA from alignment at H-paniculata_contig37707:1331..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37707.9909.1 ID=mRNA_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig37707:1331..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA TTCAGATTTTCTTTTTGACTACCAGCAATGTAATGGGCATGTACGCCTTG CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA TTTCGATTTGACTCTGAGGTTGTTCTGGTGAAGTTAAGTCAGGTTGCGTT CGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCAGACT TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAA ACAGGGAGAGTTCTAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig37707:1331..1648+

>mRNA_H-paniculata_contig37707.9909.1 ID=mRNA_H-paniculata_contig37707.9909.1|Name=mRNA_H-paniculata_contig37707.9909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig37707:1331..1648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA
TTCAGATTTTCTTTTTGACTACCAGCAATGTAATGGGCATGTACGCCTTG
CAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAA
TTTCGATTTGACTCTGAGGTTGTTCTGGTGAAGTTAAGTCAGGTTGCGTT
CGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCAGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAA
ACAGGGAGAGTTCTAAGTATGGAGATCTGGATTTGTGATAATGGTGCAAC
GAAACACATGACCCATAATTCAGATTTTCTTTTTGACTACCAGCAATGTA
ATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTT
GGCATGCTGTTCCTTCAATTTCGATTTGACTCTGAGGTTGTTCTGGTGAA
GTTAAGTCAGGTTGCGTTCGTACCACTCCTCAGTCATCACCTCCTATCTC
TCGGGAAATTCGCAGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGG
CTCAGAATTAACCTTAAAACAGGGAGAGTTCTAAGT
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