mRNA_H-paniculata_contig37686.9898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37686.9898.1
Unique NamemRNA_H-paniculata_contig37686.9898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: D8LRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.590e-23
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYNKPMTSTLQ 192
            Q  A  YPWLG+PIE LR+RNKPV PFIMGH+MQ M+VFY+VYNACLLAWS W Y K MT++LQ
Sbjct:   97 QMLALSYPWLGLPIEHLRNRNKPVGPFIMGHIMQ-MVVFYTVYNACLLAWSYWLYGKTMTTSLQ 159
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A6H5JH19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH19_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.460e-23
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYNKPMTSTLQ 192
            Q  A  YPWLG+PIE LR+RNKPV PFIMGHVMQ M+VFY+VYNACLLAWS W Y K MT++LQ
Sbjct:  461 QMLALSYPWLGLPIEHLRNRNKPVGPFIMGHVMQ-MVVFYTVYNACLLAWSYWLYGKTMTTSLQ 523
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A7S2AJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJJ9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.810e-15
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYNKPMTSTLQ 192
            Q     YPWLG+P+E LR++NKPV P I+ H M +++V YS+Y AC LAW +W Y+KP+ S L+
Sbjct:  105 QILNMSYPWLGLPVERLRAQNKPVTPLIVAH-MVRVVVLYSMYEACQLAWGIWLYDKPLPSGLE 167
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A835YR56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR56_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-12
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYNK 171
            +  AA YPW+G P++ LR +NKP  PFIM H++Q ++V+Y++YNA  +AW+MW Y+K
Sbjct:   60 RVLAASYPWIGRPMQALRRQNKPTGPFIMAHLVQ-VVVYYTLYNAVQVAWTMWLYDK 115
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A7S0XCD7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCD7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.050e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   19 YPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYN 168
            YPW+G+PIE LRSRN+ + PFI+ H+ + ++V+Y +Y A  LA+S+WFYN
Sbjct:  198 YPWIGIPIEVLRSRNQSIEPFIIAHICR-IVVYYVLYEAAQLAFSVWFYN 246
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A7S2SN08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SN08_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.840e-8
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAWSMWFYNKPM 177
            Q  +  YPWLG  IE L + N+   P +  H+   +L++Y++Y AC + WS W YNK M
Sbjct:  305 QLLSLSYPWLGAQIELLHTSNQSSNPLVSAHLFN-VLLYYTMYEACQIVWSFWLYNKSM 362
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: A0A4D9D9V5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9V5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.770e-5
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 AAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNAC 138
            A  Y WLG+P++ L++R KP+ PF++ H+ + +LV YS+Y AC
Sbjct:  282 ARSYAWLGVPMQRLQARGKPLAPFLLAHLCK-VLVLYSMYEAC 323
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BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Match: W7UBT1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBT1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 4.780e-5
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 AAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNAC 138
            A  Y WLG+P++ L++R KP+ PF++ H+ + +LV YS+Y AC
Sbjct:  356 ARSYAWLGVPMQRLQARGKPLAPFLLAHLCK-VLVLYSMYEAC 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37686.9898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LRD0_ECTSI2.590e-2371.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH19_9PHAE4.460e-2373.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AJJ9_9STRA8.810e-1551.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YR56_9STRA1.050e-1250.88Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S0XCD7_9STRA6.050e-1054.00Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A7S2SN08_9STRA4.840e-840.68Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A4D9D9V5_9STRA4.770e-546.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBT1_9STRA4.780e-546.51Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37686contigH-paniculata_contig37686:958..1801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2e-07
Seed eggNOG ortholog44056.XP_009039419.1
Preferred nameTMEM259
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_002990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.5993414-CDS-H-paniculata_contig37686:957..10591622930157.5993414-CDS-H-paniculata_contig37686:957..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37686 958..1059 +
1691481170.808226-CDS-H-paniculata_contig37686:957..10591691481170.808226-CDS-H-paniculata_contig37686:957..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37686 958..1059 +
1622930157.6177344-CDS-H-paniculata_contig37686:1711..18011622930157.6177344-CDS-H-paniculata_contig37686:1711..1801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37686 1712..1801 +
1691481170.8219428-CDS-H-paniculata_contig37686:1711..18011691481170.8219428-CDS-H-paniculata_contig37686:1711..1801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37686 1712..1801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37686.9898.1prot_H-paniculata_contig37686.9898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37686 958..1801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37686.9898.1

>prot_H-paniculata_contig37686.9898.1 ID=prot_H-paniculata_contig37686.9898.1|Name=mRNA_H-paniculata_contig37686.9898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
QTFAAGYPWLGMPIEFLRSRNKPVVPFIMGHVMQQMLVFYSVYNACLLAW
SMWFYNKPMTSTLQ
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mRNA from alignment at H-paniculata_contig37686:958..1801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37686.9898.1 ID=mRNA_H-paniculata_contig37686.9898.1|Name=mRNA_H-paniculata_contig37686.9898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=844bp|location=Sequence derived from alignment at H-paniculata_contig37686:958..1801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGTTTGCTGCGGGATACCCTTGGTTGGGTATGCCGATAGAGTTCCT
GCGAAGCAGAAATAAACCCGTAGTTCCCTTCATAATGGGCCACGTTATGC
AGGTAAGCACAAGGGTCCAACGTTCGTTCCTCAGCGACCTCTTTTTTCAC
GATATCATAGAACCTGAAACTTTCGGATTGCACTAAGTAGTATAACACAT
TTTTCACATTTTTCCCTCAGGAACCGTCCGCATTGTAGGAAAATCGGATG
TTTGGGCGGAGCGTTACGGCAGCGTTGTTTAACGTGTAGGGGGGGGGGGT
TCGAGTCTGTTCCACGCATACGACGCGTACACGCTCGAGAGGGTGTAGCC
AGAGTCTGTCTTTTACAAGATGTACAATCAGGTGTCAAGGGCGCTTGAGG
GGAACGATTTTGAGGTAGAGCATACCAGGATGGGTTGGCTACATCGAAGT
AGAACAAGCGGCCTCGACGGTGGCCCTGGATTGGTGGGTTGACGGTTTCG
AATAAAGGCGAGACAGGGTTTTCTATTGTAAAATATTCCGTAGAATCCAA
CGCGTAAGTTCGTTTTGAAATCGGAGGTCATCCCGAAGGTCTGTAACTAC
GGCTCAAACTTACGGGATAGAGGAATTATAGCCTTGCTCCTGTCCTTTTC
CCAAAATGCTGTGTAAGCCCTGGGACTCAGTCGTGGGTAGATGTTATCTT
TGTCTTAGCCCTTCCCCCCCCCCCCTCCCCTCCCACTCTCATCGTTGATG
CGAGCAGATGTTGGTGTTCTACTCTGTTTACAACGCGTGTCTGCTCGCTT
GGTCCATGTGGTTCTATAACAAGCCTATGACCTCTACTCTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig37686:958..1801+

>mRNA_H-paniculata_contig37686.9898.1 ID=mRNA_H-paniculata_contig37686.9898.1|Name=mRNA_H-paniculata_contig37686.9898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig37686:958..1801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACGTTTGCTGCGGGATACCCTTGGTTGGGTATGCCGATAGAGTTCCT
GCGAAGCAGAAATAAACCCGTAGTTCCCTTCATAATGGGCCACGTTATGC
AGCAGACGTTTGCTGCGGGATACCCTTGGTTGGGTATGCCGATAGAGTTC
CTGCGAAGCAGAAATAAACCCGTAGTTCCCTTCATAATGGGCCACGTTAT
GCAGCAGATGTTGGTGTTCTACTCTGTTTACAACGCGTGTCTGCTCGCTT
GGTCCATGTGGTTCTATAACAAGCCTATGACCTCTACTCTGCAGCAGATG
TTGGTGTTCTACTCTGTTTACAACGCGTGTCTGCTCGCTTGGTCCATGTG
GTTCTATAACAAGCCTATGACCTCTACTCTGCAG
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