mRNA_H-paniculata_contig37546.9876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37546.9876.1
Unique NamemRNA_H-paniculata_contig37546.9876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A7X3UXJ8_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3UXJ8_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.170e-9
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   28 DRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTG 192
            DR AL+ LY ATGG  W  +D W+T+ P L +W GVT+  GRVV++ L  N LTG
Sbjct:  216 DRAALVTLYEATGGPNWHQSDNWLTDAP-LGEWHGVTVSNGRVVQLKLDHNNLTG 269
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A7S4F606_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F606_CHRCT)

HSP 1 Score: 59.7 bits (143), Expect = 8.460e-9
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   16 SLETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTG 192
            SLE+DR AL+ LYTA GG  WR+  GW++  P L +W GV + EGRVV + L  N L+G
Sbjct:  142 SLESDRRALVALYTALGGDLWRDNHGWLSALP-LERWTGVFVHEGRVVMLWLPHNNLSG 199
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A7S4F686_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F686_CHRCT)

HSP 1 Score: 59.7 bits (143), Expect = 8.520e-9
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   16 SLETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTG 192
            SLE+DR AL+ LYTA GG  WR+  GW++  P L +W GV + EGRVV + L  N L+G
Sbjct:  441 SLESDRRALVALYTALGGDLWRDNHGWLSALP-LERWTGVFVHEGRVVMLWLPHNNLSG 498
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A7S4BRR1_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BRR1_CHRCT)

HSP 1 Score: 59.7 bits (143), Expect = 8.520e-9
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   16 SLETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTG 192
            SLE+DR AL+ LYTA GG  WR+  GW++  P L +W GV + EGRVV + L  N L+G
Sbjct:  441 SLESDRRALVALYTALGGDLWRDNHGWLSALP-LERWTGVFVHEGRVVMLWLPHNNLSG 498
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: UPI00126A3C48 (immunoglobulin domain-containing protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI00126A3C48)

HSP 1 Score: 59.3 bits (142), Expect = 1.180e-8
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    7 TAGSLETDRTALLDLYTATGGLQWRNT----DGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTGA 195
            T G  ET++ ALLDLY AT G  W NT      W TN P +  W GVT+ EG+V E+ L  N LTGA
Sbjct:  700 TCGVSETEKLALLDLYNATNGENWNNTLAGNQPWDTNIP-VCDWFGVTVVEGKVAELNLVTNALTGA 765
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.770e-8
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   22 ETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIRE-GRVVEVLLQMNYLTGA 195
            +TDR AL+ LY A GG  W+N   W   D DLSKW G+ I + GRVVEV L  N L G+
Sbjct:   53 QTDRDALVALYDAAGGFNWKNNGNW-NADADLSKWHGININDQGRVVEVHLAANNLQGS 110
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: UPI001B5892D1 (Uncharacterized protein n=2 Tax=Aquimarina sp. MMG016 TaxID=2822690 RepID=UPI001B5892D1)

HSP 1 Score: 57.0 bits (136), Expect = 7.680e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   28 DRTALLDLYTATGGLQWRNT----DGWVTNDPD--LSKWVGVTIREGRVVEVLLQMNYLTG 192
            +R AL+DLY AT G  W NT      W+ NDP   +S W GVT+ +G++VE+ LQ N L+G
Sbjct:   36 ERQALIDLYNATDGDNWTNTVAGNQPWLINDPSSPVSDWFGVTVVDGKIVELTLQDNMLSG 96
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A7K2C9X4_9BACT (Uncharacterized protein n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A7K2C9X4_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-7
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   13 GSLETDRTALLDLYTATGGLQWRNTDGW---VTNDP---DLSKWVGVTIREGRVVEVLLQMNYLTG 192
            GSLE D  AL+ LY AT G  W   D W   +T  P   +L  W GVT+ +GRVV++ L  N LTG
Sbjct:   39 GSLEKDWKALVALYNATDGQNWTKKDNWSTDLTTPPTAQELDSWYGVTVTDGRVVQLKLSYNSLTG 104
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A3B7BTH2_9FLAO (Uncharacterized protein n=2 Tax=Aquimarina sp. BL5 TaxID=1714860 RepID=A0A3B7BTH2_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-7
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    7 TAGSLETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREGRVVEVLLQMNYLTG 192
            T G    ++ AL+DLY AT G  W+N   W+T+ P +  W GVT+ +G++VEV    N L G
Sbjct:  788 TCGVSAAEKQALIDLYNATDGANWKNNTNWLTDAP-VCDWYGVTVEDGKIVEVAFFDNNLVG 848
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BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Match: A0A521BVK2_9BACT (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521BVK2_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.440e-7
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   19 LETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIRE-GRVVEVLLQMNYLTG 192
            +E D  AL+ +Y ATGG  W N + W+  D  LS W GVT    GRVVE+ LQ NYL+G
Sbjct: 1309 VEADSLALVAMYNATGGPNWNNNNNWL--DGPLSTWEGVTTNAFGRVVELSLQYNYLSG 1365
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37546.9876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3UXJ8_9BACT3.170e-952.73Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7S4F606_CHRCT8.460e-952.54Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4F686_CHRCT8.520e-952.54Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4BRR1_CHRCT8.520e-952.54Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
UPI00126A3C481.180e-850.75immunoglobulin domain-containing protein n=1 Tax=P... [more]
D8LL09_ECTSI2.770e-852.54Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
UPI001B5892D17.680e-847.54Uncharacterized protein n=2 Tax=Aquimarina sp. MMG... [more]
A0A7K2C9X4_9BACT1.040e-746.97Uncharacterized protein n=1 Tax=Rhodothermaceae ba... [more]
A0A3B7BTH2_9FLAO1.050e-741.94Uncharacterized protein n=2 Tax=Aquimarina sp. BL5... [more]
A0A521BVK2_9BACT1.440e-750.85Por secretion system C-terminal sorting domain-con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37546contigH-paniculata_contig37546:122..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog2880.D8LTP7
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.8146002-CDS-H-paniculata_contig37546:121..3221622930154.8146002-CDS-H-paniculata_contig37546:121..322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37546 122..322 -
1691481169.514265-CDS-H-paniculata_contig37546:121..3221691481169.514265-CDS-H-paniculata_contig37546:121..322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37546 122..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37546.9876.1prot_H-paniculata_contig37546.9876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37546 122..322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37546.9876.1

>prot_H-paniculata_contig37546.9876.1 ID=prot_H-paniculata_contig37546.9876.1|Name=mRNA_H-paniculata_contig37546.9876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MFTAGSLETDRTALLDLYTATGGLQWRNTDGWVTNDPDLSKWVGVTIREG
RVVEVLLQMNYLTGAK*
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mRNA from alignment at H-paniculata_contig37546:122..322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37546.9876.1 ID=mRNA_H-paniculata_contig37546.9876.1|Name=mRNA_H-paniculata_contig37546.9876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig37546:122..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCACTGCAGGCTCTCTCGAGACGGACCGTACAGCTCTGCTCGACCT
CTACACTGCCACTGGTGGGCTTCAGTGGAGAAATACAGATGGTTGGGTGA
CCAACGATCCGGACTTGAGCAAATGGGTCGGCGTCACCATTAGAGAGGGT
CGGGTGGTGGAGGTGCTACTTCAGATGAACTATCTTACAGGTGCGAAATA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig37546:122..322-

>mRNA_H-paniculata_contig37546.9876.1 ID=mRNA_H-paniculata_contig37546.9876.1|Name=mRNA_H-paniculata_contig37546.9876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig37546:122..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCACTGCAGGCTCTCTCGAGACGGACCGTACAGCTCTGCTCGACCT
CTACACTGCCACTGGTGGGCTTCAGTGGAGAAATACAGATGGTTGGGTGA
CCAACGATCCGGACTTGAGCAAATGGGTCGGCGTCACCATTAGAGAGGGT
CGGGTGGTGGAGGTGCTACTTCAGATGAACTATCTTACAGGTGCGAAATA
GATGTTCACTGCAGGCTCTCTCGAGACGGACCGTACAGCTCTGCTCGACC
TCTACACTGCCACTGGTGGGCTTCAGTGGAGAAATACAGATGGTTGGGTG
ACCAACGATCCGGACTTGAGCAAATGGGTCGGCGTCACCATTAGAGAGGG
TCGGGTGGTGGAGGTGCTACTTCAGATGAACTATCTTACAGGTGCGAAAT
AG
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