mRNA_H-paniculata_contig375.9866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig375.9866.1
Unique NamemRNA_H-paniculata_contig375.9866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 6.300e-50
Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 3 
Query:  276 GCFADTDTDRIME-LAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVALGCFADMDGEMRIMK-EITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFEY 869
            GC+ D    RIM+ L   D  M+ E+CE+ C+GS YF  QYG +C+CG++G D+  HG+S++CT PC GDA+Q+CGG  +  VY  L  G+  T                  +GC+ D + + RIM+  +T    MT EMCE  C GN +FG+QYG +C+CGGE TD + HG+S  C   C GD  Q+CGG ++M V+ Y
Sbjct:   97 GCYGDDREARIMDDLVLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVY--LFTGETSTSSL---------------VGCYQD-ESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.620e-42
Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 3 
Query:  336 MSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVALGCFADMDGEMRIMK-EITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFEY 869
            M+ E+CE+ C+GS YF  QYG +C+CG+ G+D+  HG+S+ CT  C G+A+Q CGG  +  VY Y          TP    VG          C+ D + + R+M+  +T    MT EMCE  C GN++FG+QYG +C+CGG  T+ + +G+S  C   C GD  Q CGG ++M V+ Y
Sbjct:    1 MTTELCELTCLGSTYFATQYGRECWCGSAGMDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNE------STPTSSFVG----------CYQD-ESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSY 162
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BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 8.650e-35
Identity = 72/204 (35.29%), Postives = 111/204 (54.41%), Query Frame = 3 
Query:  255 PIDVAFSGCFADTDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVALGCFADMDGEMRIMKEITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFE 866
            P D  + GC++D    RI EL      M+ E+C   C    Y+G QY  QC+CG +  D+  +G + +C + C GDA+++CGG ++M+VY+ + P D                  P  LGC++D   + RI + + T   MT E+C   C   +++G QY  QCWCG ++ D+  +G  + C M C GD S++CGG +SM V+E
Sbjct:  101 PDDSGYLGCYSDPADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANG-AGECDMACSGDASEICGGFYTMSVYENVDPVD------------------PSYLGCYSD-PADSRIFELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGE-CDMDCSGDSSEICGGFYSMSVYE 281
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: A0A8H7W0C8_9HELO (Uncharacterized protein n=2 Tax=Cadophora TaxID=210567 RepID=A0A8H7W0C8_9HELO)

HSP 1 Score: 139 bits (349), Expect = 1.300e-32
Identity = 67/226 (29.65%), Postives = 109/226 (48.23%), Query Frame = 3 
Query:  270 FSGCFADTDTDR--IMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDT------------------------PAPVGVGPPPLGPVALGCFADMD-GEMRIMKEITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFE 866
            F GC++D D  +  ++  A  D   ++EMC ++C    +FGL+YG +CYCG   +D        +C +PC GD+ + CGGS+ M +Y Y       TL T                         AP G    P    ++GC+ D D  E  ++    ++  +T   C  +C G  +FG++Y  +C+CG   +        + C MPC GDP+Q+CGG + M++++
Sbjct: 1202 FLGCYSDNDVTQRTLVGAAFPDAGQTIEMCSLKCTTFSFFGLEYGTECYCGPAIVDSSVLTTDGRCNMPCSGDSAETCGGSYGMNIYSYNPVSSSSTLQTGSSXXXXXXXXXXXXXXXXXXXXTSAPTGT---PNSFTSMGCWTDNDVTERTLVGGAYSDQALTLSTCSALCKGFDYFGVEYSTECYCGNNFSSTSALATDERCNMPCKGDPTQICGGPYGMNIYK 1424
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.110e-30
Identity = 64/175 (36.57%), Postives = 94/175 (53.71%), Query Frame = 3 
Query:    6 GIPGIQSKDICCALACGQCGGTGCSS-AGGLTSTDCCDSGVRSTGIMCDETNAGPCIISEGSPMPTPFTPMPTDPTISSEPLPGPIDVAFSGCFADTDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYD 527
            G+ G+ +   CC L CG CGG+GCSS A GL   DCC S + S GI+C ++ A PCI      + T                  P+  ++ GCF+D    RI         M+ + C   C  S Y+G QY  +C+CGAEG D+  +G +  C +PC GDA+++CGG ++++VY+
Sbjct:   28 GLAGVSTGVYCCTLGCGTCGGSGCSSRAEGLNGDDCCTSNIASNGILCADSGAAPCIGDVDDDVST---------XXXXXXXXXPVGSSYLGCFSDLPGSRIFTFEAATYTMTADACLALCADSAYYGTQYSEECWCGAEGADYDANG-AGVCDMPCGGDADEICGGFYAISVYE 192
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.940e-30
Identity = 67/212 (31.60%), Postives = 105/212 (49.53%), Query Frame = 3 
Query:  255 PIDVAFSGCFADTDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVALGCFAD-MDGEMRIMKEITTEPMMTPEM-------CERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFE 866
            P+D A+ GC++D  T+R+         M+ E+C  +C  S ++G QY  +C+CG     +  +G    C +PC G++ + CGGS+SM VY                         P  LGCF+D  DG M + +   T   MT E        C   C G+ ++G QY  +CWCG ++ D+  +G    C MPC G+  ++CGG ++M V++
Sbjct:   86 PVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGV-CDMPCSGNSEESCGGSYSMDVYAQ----------------------DPAYLGCFSDPADGRMFVWESSNTA--MTAEASRRGRQACASRCSGSAYYGTQYSQECWCG-DNADYAANGFGV-CDMPCTGNSDEMCGGPYTMSVYQ 270
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.800e-28
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 3 
Query:  270 FSGCFADTDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVALGCFADMDGEMRIMKEITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGK 788
            + GCF+D   +RI EL      M+ E+C   C    Y+G QY  +C+CG     +  +G S +C +PC GDA+++CGG +SM+VY      DV+             P+ P   GC++D  G  R+  +  +   MT + C   C  + F+G QY  QCWCG  +  + V+G+
Sbjct:   74 YLGCFSDPADNRIFELVTSSDDMTEEVCSGHCSAYPYYGTQYSTECWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQN----DVEI------------PVDPAYRGCYSD-PGTNRVFVQDASSDEMTADQCATQCADSAFYGTQYSSQCWCGDINAPYSVNGE 229
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.360e-28
Identity = 78/259 (30.12%), Postives = 115/259 (44.40%), Query Frame = 3 
Query:  255 PIDVAFSGCFADTDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYD----------YLTPGDVDTLDTPAPV------------------GVGP---------------------------PPLGPVALGCFADMDGEMRIMKEITTEPMMTPEMCERICVGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFE 866
            P D  + GC++D    RI +L      M+ E+C   C    Y+G QY  QC+CG +  D+  +G + +C + C GDA+++CGG ++M+VY+          Y  P D    D  A                    G G                             P+ P  LGC+AD   + RI   + T   MT E C   C   +++G QY  QCWCG ++ D+  +G  + C M C GD S++CGG +SM V+E
Sbjct:   71 PDDSGYLGCYSDPADSRIFDLVATADDMTSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANG-AGECDMACSGDASEICGGFYAMSVYENPDDSGYLGCYSDPADSRIFDLVATADDMTSECWCGDNADYDANGEGVCDMACSGDASEICGGFYAMSVYENPDVDPVDPSYLGCYAD-PADSRIFDLVATADDMTSENCLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGE-CDMACSGDSSEICGGFYSMSVYE 324
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: A0A507BMF7_9PEZI (Uncharacterized protein n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507BMF7_9PEZI)

HSP 1 Score: 119 bits (298), Expect = 2.000e-27
Identity = 68/210 (32.38%), Postives = 100/210 (47.62%), Query Frame = 3 
Query:  246 LPGPIDVAFSGCFAD-TDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPPLGPVAL-GCFADMDGEMRIMKEITTEPMMTPEMCERICV--GNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVF 863
            +P P D A  GC+ +     + +     +  M+VE C   C GS ++G++YGV+CYCG    +         C IPC G+  Q CGG   + +Y     G   TL    P       + P A  GC+A+     + +  +     MT EMC   C   G KF GL+YG +CWCG E  +   H     C MPCGG+P++ CG   ++ ++
Sbjct:  121 VPAPTDTAL-GCWTEGIGGAKALSEKHFNTSMTVEKCASLCTGSAFYGVEYGVECYCGDAVQNGAFRTDVKACDIPCAGNLAQQCGGRSFINIYQVA--GSTATLPPATPTQA----VYPYAYAGCYAEPASGAKALSTVYQVADMTREMCFYDCYNGGYKFAGLEYGTECWCGNELANGTAHVDDAVCNMPCGGNPAETCGAGNTLQLY 323
[Close]
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Match: D8TXT8_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TXT8_VOLCA)

HSP 1 Score: 121 bits (304), Expect = 6.900e-27
Identity = 66/207 (31.88%), Postives = 111/207 (53.62%), Query Frame = 3 
Query:  270 FSGCFADTDTDRIM--ELAKEDPLMSVEMCE--MECVGSGYFGLQYGVQCYCGAEGIDHMKHGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPPP--LGPVALGCFADMDGEMRIMKEITTEPMMTPEMCERIC--VGNKFFGLQYGVQCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFE 866
            + GCFAD D DR++   LA  DP MSV  C    +  G  YFG++YG +CY G++     + G+SS CT  C GD +++CGG +++ +Y+             +P+G+           +GCF D          +  +P M+   C  +    G  +FG+++G +C+ G +    + HG+++ CT  C GDPS++CGG +++D++E
Sbjct:  118 YIGCFAD-DADRVLPERLADNDPNMSVSYCRNLAKAAGLPYFGVEYGQECYGGSDMEIATRLGRSSNCTHSCSGDTSKICGGDWAVNIYET------------SPIGMYGEHRWTSKGYIGCFNDDWDRALPQYLVYYDPGMSVSYCRGLAKAAGLPYFGVEFGQECYGGSDMARAISHGRNNTCTHRCSGDPSEICGGGWAIDIYE 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig375.9866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL0_ECTSI6.300e-5043.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE8_ECTSI2.620e-4240.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH79_ECTSI8.650e-3535.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8H7W0C8_9HELO1.300e-3229.65Uncharacterized protein n=2 Tax=Cadophora TaxID=21... [more]
A0A6H5JU45_9PHAE1.110e-3036.57WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAS7_9PHAE2.940e-3031.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4P0_ECTSI1.800e-2833.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K060_9PHAE6.360e-2830.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A507BMF7_9PEZI2.000e-2732.38Uncharacterized protein n=1 Tax=Thyridium curvatum... [more]
D8TXT8_VOLCA6.900e-2731.88Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig375contigH-paniculata_contig375:1728..8439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue1.2e-44
Seed eggNOG ortholog2880.D7FRS2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size1010
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig375.9866.1prot_H-paniculata_contig375.9866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig375 1866..8299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.1478596-UTR-H-paniculata_contig375:1727..18651622930153.1478596-UTR-H-paniculata_contig375:1727..1865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig375 1728..1865 -
1691481168.8674226-UTR-H-paniculata_contig375:1727..18651691481168.8674226-UTR-H-paniculata_contig375:1727..1865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig375 1728..1865 -
1622930153.2983167-UTR-H-paniculata_contig375:8299..84391622930153.2983167-UTR-H-paniculata_contig375:8299..8439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig375 8300..8439 -
1691481168.941255-UTR-H-paniculata_contig375:8299..84391691481168.941255-UTR-H-paniculata_contig375:8299..8439Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig375 8300..8439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.1848235-CDS-H-paniculata_contig375:1865..19941622930153.1848235-CDS-H-paniculata_contig375:1865..1994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 1866..1994 -
1691481168.8851354-CDS-H-paniculata_contig375:1865..19941691481168.8851354-CDS-H-paniculata_contig375:1865..1994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 1866..1994 -
1622930153.2034318-CDS-H-paniculata_contig375:6705..67621622930153.2034318-CDS-H-paniculata_contig375:6705..6762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 6706..6762 -
1691481168.8960483-CDS-H-paniculata_contig375:6705..67621691481168.8960483-CDS-H-paniculata_contig375:6705..6762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 6706..6762 -
1622930153.2176695-CDS-H-paniculata_contig375:7081..73631622930153.2176695-CDS-H-paniculata_contig375:7081..7363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7082..7363 -
1691481168.9045398-CDS-H-paniculata_contig375:7081..73631691481168.9045398-CDS-H-paniculata_contig375:7081..7363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7082..7363 -
1622930153.231996-CDS-H-paniculata_contig375:7610..76671622930153.231996-CDS-H-paniculata_contig375:7610..7667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7611..7667 -
1691481168.913045-CDS-H-paniculata_contig375:7610..76671691481168.913045-CDS-H-paniculata_contig375:7610..7667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7611..7667 -
1622930153.260232-CDS-H-paniculata_contig375:7846..80131622930153.260232-CDS-H-paniculata_contig375:7846..8013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7847..8013 -
1691481168.923705-CDS-H-paniculata_contig375:7846..80131691481168.923705-CDS-H-paniculata_contig375:7846..8013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 7847..8013 -
1622930153.2740426-CDS-H-paniculata_contig375:8259..82991622930153.2740426-CDS-H-paniculata_contig375:8259..8299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 8260..8299 -
1691481168.9322512-CDS-H-paniculata_contig375:8259..82991691481168.9322512-CDS-H-paniculata_contig375:8259..8299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig375 8260..8299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig375.9866.1

>prot_H-paniculata_contig375.9866.1 ID=prot_H-paniculata_contig375.9866.1|Name=mRNA_H-paniculata_contig375.9866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MCDETNAGPCIISEGSPMPTPFTPMPTDPTISSEPLPGPIDVAFSGCFAD
TDTDRIMELAKEDPLMSVEMCEMECVGSGYFGLQYGVQCYCGAEGIDHMK
HGKSSKCTIPCPGDANQVCGGSFSMTVYDYLTPGDVDTLDTPAPVGVGPP
PLGPVALGCFADMDGEMRIMKEITTEPMMTPEMCERICVGNKFFGLQYGV
QCWCGGEDTDHMVHGKSDDCTMPCGGDPSQLCGGSFSMDVFEY*
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mRNA from alignment at H-paniculata_contig375:1728..8439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig375.9866.1 ID=mRNA_H-paniculata_contig375.9866.1|Name=mRNA_H-paniculata_contig375.9866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6712bp|location=Sequence derived from alignment at H-paniculata_contig375:1728..8439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGTATCCCCGGCATTCAGTCAAAGGATATCTGCTGCGCGTTGGCC
TGCGGACAGTGTGGTGGAACCGGATGCTCGAGTGCTGGTGGTCTGACCTC
CACCGATTGCTGTGACAGCGGCGTCCGCTCGACTGGAATCATGTGCGACG
AGACAAACGCAGGCCCTTGCATCATCAGCGGTAAGACTTGATAGAACTTC
TTCGGTTCGTGAAGACTGGCCGAACCCGCATGAACTATACGATCGAAAGT
GGTGCTGAGTATTTTTGTCTTCCGAAGTGAAAATTTGTCTGGAGTAATTT
ATCTCTCACTACGATCAGCTGTTGGTCTTGGTTATTAAACTGTTCATGTG
CGTCCCGCCGTTACTCCCGCTGTTTTCTCTTAACTTTCCGCTTGTTGCCG
TACACGACGATCAAAATTGAACACAGAAGGGAGCCCCATGCCGACTCCTT
TTACCCCCATGCCTACTGATCCCACAATATCTTCCGAGCCCTTGCCGGGG
CCCATCGACGTGGCTTTTTCTGGGTGCTTTGCGGACACCGATACGGATCG
CATTATGGAGCTGGCGAAGGAGGACCCCTTGATGAGTGTAGAGGTGAGTG
AGGGGCAGAAGTGGTGGGGCGATTTCAATCGGTCAGGATGAATCTGAAGT
ACGCGATCGAGTCACCGTAGGTTTCAATAGCAATATTTTGGTTGCTCTAC
TGGACAAGTTTTCGTTCCGCTCCGTCCCGCCCCAACCTCCTACCCTTTGC
TGCCGTCGCCACCACGAGCCAGATGTGCGAAATGGAGTGCGTGGGAAGCG
GGTACTTTGGGCTGCAGTATGGTGTTCAGGTCAGTGTTGAAATGTTGTTT
CTGACATTTCGAATTGGTGAGGCAGGAGATTTTCGGCGTCGTCGTCGTGC
GCTTTGCAGGGCGCGAACAACGATTTCGACAGCCTGCTGGTAAGGGGGAA
ATGCCATCGTGATAGTACTACTTGCTGTACAGTTCGATTTTTTCTTCATT
AGTCCACAACTTTGGCCGGTGCACGCCAACTGACGTCGTGTGTTTCTTGT
ACATCAATCTCTTCGATATCGAGCAGTGTTATTGCGGCGCCGAGGGCATA
GACCACATGAAGCATGGCAAGTCCTCGAAATGCACAATCCCATGCCCGGG
AGACGCGAACCAAGTCTGCGGGGGGTCGTTTAGCATGACCGTCTACGATT
ACCTCACCCCCGGGGATGTTGACACTCTAGATACACCCGCGCCAGTGGGT
GTGGGTCCTCCGCCCCTAGGACCGGTTGCTCTCGGGTGCTTCGCGGACAT
GGATGGCGAAATGCGCATCATGAAAGAGATCACCACCGAACCGATGATGA
CTCCCGAGGTGGGCAAAATATCAGAGTGGACAGTTGCAGCTGGAACCTTA
CAATTCCCTTCCTGTACGCTCCTGATGCACGACAACATTCAATACTGGCT
CCTGTACACACGTATATATATATTGTGTACAGGAGCATGAGGCTTTGGGT
CAAAGGCAAGCGGGGCTGTATTGTCGGTCACGTGTGCTGTGTCCCATTTT
GGGGAACTTGAATTTGAACTGGATTTACTTCATTGGGTTCTTCGTTAGAC
CAATAAAGAAACTTTCGCCCCGCTCTAAGCACACACCCCCTGCACTCTCC
TGCCGGCATCATAATGAAACAATACAGATGTGCGAGAGGATATGTGTCGG
AAACAAGTTCTTCGGGCTGCAGTACGGCGTTCAGGTCAGTGTTGACACAA
TGTGATTACAAGGATCACAAGGATCGATATCTGAATCGCCTCTTCCTCGC
ACGGAATCCCTTTACCTGTATTTTCGGTAGTACGCCCCCCCGGGGGATTT
TCAGAAAGTTCAGTCCCAACGTAAAAGACACTCGAAGCAAGTTTTTGCCT
GCAGGCATTCACGAATGGAATGAGTTAAGTACTGATTGTTCAAGATCGCG
TGGCCTCTACAGTAGCAGGGATGGGCAGTCGTCACATACAGCCAGATGGC
GGCCCAGTGTAATCGTTTGTTTGTTTGCCTGTTGACACTCGGGCTCAGTG
GCTCAGACTCGTAAATATCCCACACTTGACCCCCCAGGTAGCAACGTGGA
AGCGATATTAGATGCTGGCAAAATAAACAGATGCAAATTTGTGGTATGAC
CCAACCCATTTTCCTCCAACCCCCGCAATCACTCTGCTCCTCCAAATAAA
ACAAAATATATACTCCGTAGTATATATATATATATATATATTAACAATTA
GAGCCTTCATTTCGTGAAATTCGTGCTACGGAATCCCTTGACCCTATACC
CTAATCGAAACCCTTCTTTTTTTATGTGCGATTCGTTCATCAATTTACCC
TGTTTTGTGTGAGCCATACTTGCGCTACCATAGCTTTGATACGTTTTAAC
GCCCACAGACCAGGGGCTTTATCATTAACTGGCATGACTCATGGTTACCT
ATCGGTACCCTGAGTCACTCATGAGCGCCCACGTGTCCCCATAGATCAAC
CCACGGGAAACCATGGGAAATCCCTGGGCACCCATGAACAACCGTGCGTG
ACCCATGGGTCACGACCCATGGGCGCTGGTGAACAACCACGGATGCTCAT
GGGTGACTAAGGGCGCCCACAAGTGCCCGAAGGTGCCCATGAATTGCCCA
GGGGCCAACATGGATACCACTGTGGGTAGCCAGGGCAATCCACGGGAGCC
CATCAAAACACCCAAGATATCGGTATTTGTCACATAATGTAAAAGACCCC
ATAGGTTTAGCCCACATCGACTCATGGCGTCCTAGGTGGTGTATGCGTTT
TATCCTGTGATGAATCGTGGTTACCCATAATTGTTTATGCGACCGACATA
GCCGTGGGTCGGTTGTAACATCACCGTTGAGTACACATGGTTTAGAGCAT
GAATTCCATTGGCAACCCACGCACAAATATCTGATTCGCATGATAACCCG
AAGCTTCACACGAGAACAATAATACCTTCTGAAGCATGACGGACGTGAGC
CAATCGAGTATGGCACGCAGTGTTACGCTGGAGCATGACCAGGAATAATT
CATTTTGAATGCACATGTGCATAATACAACCAGTACAATTAGTTCCCCGT
TGATGAATCAAGTAGTCAATGATGTTCCGAAGCTTTACATCAGAACAATA
ACGCCTTCTGGAGCATGACGTATGTGATCCAGTCGAGCATAACACACAGT
ACCACGCTGGAGCATGACCAGGACTTATTCGTTTTGAATGTACTTATACA
TGACATAACGAGTAAAACAAGATCCCCATTGATGAATTAAGTAGTTAATG
CTGTTCCGAAGCTTTGTATGAAACCAAAAACGCGTAGACCATGGTAAGCT
ATACTCTAATATGTTGCATTTTATCTTCAGCGGCGGGCCATGATGCATCG
CCGCATAAACGCTACTTACGGTTCGCCTCATCCAATCCGTTACCCGTGGT
GGCTCTTGGAACGCACAATCCATGCATTGATCCATGGGTTGCCGTAGTAT
GTTGCGTACACCACGAACGGTCTTTCTGGGTACCCACAGTTGCTTGTGGG
CGCAATTAGCTCATGAAATTCCCATGGCTTTCCCATGGGTTCCCGTGAAT
TGACCAGTTGTGGTCGCTCATGAGCGAGTATGGATACTCATGAGTCACGT
TAAATAATGTAAAACCCTAATCAGTTCTCGACTTTGTGGAGAAAAGAGTA
TGTGAGTTGCGACTTCCTTTTGGAGTTACTTGTTGATGTTAATATTCGAA
TCCCATTTATGTGTTGCTGTCTGAGGAATTTAATCCACACTTGGATCTGA
ATTGTGCAGTACTACCCATGAATATATCGGGGGCTCCGAGCAAAAACTCG
CCGATGGGGTCGAGGGGGGTTGGCGTAGTTCGAGGGGAGCGCCGTTGAAA
TCAAGTAGTTCTTGATACGACACTAAAAGTAAGTGGCCTAAGACCCATCT
CGTATGGTGTCAAAAAAGCCCAGTCAAAATGATGAAATCCCAATATTTTT
ACTGGAGATTTTTTATCCATCATGTTATGGGGTCCATTTTTTTTTTTGTT
TACACGAAATTTATGATCGGGGAGGATTGACAGCTCCCCAAGTGAAAAAA
TCGCGATTTTTTCACTGGAGAATGAGACCCCGCAAAATCATAAAAATGGG
ATTTCAACGAGATGCACAGACGTGTTCTCCTGAATGTTGTTTCATAGCCC
ACAGTAAATCACCCGCGCTGGTCATAGATGCCAGTATGAAGCACGTATAC
AATCCAACGTGTGAGCCCAGCCGCCCTATGGAAGATCTATGGGAATGACA
ATCGTTCATATCGGCGGCGCTCGCTGCTGTAGTGGCGGTCGTCGATATTC
TAAACGAAGACGACAGACGCAGTCGACGCATGGGTGCAGCGGCGCTTGCT
ATCTTTCCGAGCAGACTGTGAGTCGCCCACCCAGCGGAAGAAGCTCTCAA
CCGCGAAACCCTTGTATAGGTGCATCACGTTATTGCACCTTTCGCTCAGG
GGCAGGGTCCCACCGTTCTTAAGAGATGTACAAGTGTACCACTGTGGTAC
ATCCTGTAGAATGATCCATTGTGTCTTGAACACACTCGAATGTAATTCCT
GAGCCATCATTTTCTCCTACCCTCATTCCACGCAAGGGTTTGCCTTGATA
AACATTGCGGTGGATGGTGCATTCATGGTGGTCCGCTTTCACAGGACGAG
GGTGTGCTGTGTTCAACGGGTGACGCTCACTGGTTCAAGAGGTTAAATGT
CATCCATTGAACATGCTGGACGAGAAGTCGTGTATTCGAAATTCTCTCAA
CTTAATTACGCCGTTCGCAAAACGCGGTCAAACATTTAACTAACGACATT
TTACGTTTTTGATGCAGACCCGACCCCATAAGATGAGCTATATTTTTTTC
CCAATCATTGTATTTCACAGCAAGAAAATGGGATTTTATGGTTTTAAACT
GGAAATGTTCTTGACACCATAAGAGATGGCCTAAACTAAACAACCCAAGG
AAAAAACACGTTGGTCGGGGAATATTGATGTTGAAATTATTTCACGGCCA
TTGAGTATTCGTGAAGTGTTTGCATTATTGATGGTAATTTTGCCTACGCC
GCTTTTTCAGATCGTTGCCCCTATCACGGGCAGCACGTACCAAGTCAAGC
TTTGCACCTGACCGGTCGCTCGCTGAAATGGCTGGCCTGCAGGCAGAAAA
ATAGACCCATGCCAACGAGCTACCGGCGGACAGGATTTCAGATTCTAACG
TGGTCAATCACGAGCTTTGATTCATCTACCTTGTGTAGTAGCTGTCTTGT
TTCGTATCATCTTATCCCTAACAACGATCACCTTTATGGGAATGGATCCA
GATGTGGAGTAGTTTAGTATCAGTTATCTAAATGCAATGTCTATCCTCGC
CCAGATCTGGGAAAGTGAGGTGCCTCTTTCGAAATAGGTGCAAAAGTAAA
AAATCGTGTTTTATTTCCCTCGGGTATATGGGACAAGGGTAGAGTATAAA
GAAAATCATGTAATTCCTACATAAACGTAGAAATTAGTATCCAGATATAT
CGGAAAATTGTCTCAGATTGTTGTCACAATACCCAAGATAGTATAAAGCG
GAACAAGGGGTACGATATTCCTTACGCCCAGGAGAAAACCGCTTTCAAAC
AACGAAAAATACCGTTACTTGGAATAGTTATTCAAATCCTCATCCGTGTA
CACATGTACCATAGAATATGACCTAATGCTCACCGGCGCCAAAGGAAGGT
CGAACAAACGAATGGGACAAGAACAAAAATCGAAAAGGAACAAGTCCGTG
GACATTTCGTACCTGCTACGAGTATGGTTTTCATGCGTGATCATGGCCCC
GTGGGGACGTGGTTTGTTTTATATCGTACGATAATGTGCACGGTTGTACG
TAGTATACATTACGTTGTGCCCTCGAGTCCCTATCGAATGCTACAGTCGG
GGTAACTTACGCAGAGGCAGTCTTCTCAGAGTGGCTGAACAGGGGCAGAC
CCATGTCCCCACAAATCTTGCCGTAAGGGTTGTTTTCCCCTGTTTTGTTT
GTCAGGCGTTAGTTAGGGGCCAGTCTTGATGGAAACTGCTGAAAGGTTGA
AGTCAGTCAGAAAATTTCGACCGCGCTAACCAGATAACAGCAAATTCCCA
CCGGGGCAATATGCCACCGTCAACAGGGCTAGCCAACCACCGACGGCCAG
TGTTGGAACTCTGACATGTCCATGACCAACCCACTCCGGTTGACCATGGA
CAGATGTGATGGGCGGGTTGAAGTTTTGTGCAGGTAAAAAACCCTTGTAC
CGAGCACGGGTGAACGTTGTTGCGCGAGAGTGTAAATATATGTAATAGTC
ACTTTCTGGGCTCCTGCTCGTATGTTTGAACGTTCTTTCACGTGTTACGC
CTCCACTATCGTCGTTGCTTTTCCTCTCTCGACGCGTTCATCCAGTGCTG
GTGCGGCGGCGAGGATACCGACCATATGGTTCACGGCAAGTCTGACGATT
GCACAATGCCATGCGGGGGAGACCCTAGCCAGCTCTGTGGAGGATCTTTC
AGTATGGACGTCTTCGAGTACTAGACTAGACTCTCAAGGGACCTGTAGTA
TGGTGTTCACAAAGCCCTTGGTGCAATGAAATGTACTCTATGAGAGGGCG
GGATGCGTGTGTTGAGTTTCCTTTTCTATACATATGGGACAGAGACATCG
TCGTGAGTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig375:1728..8439-

>mRNA_H-paniculata_contig375.9866.1 ID=mRNA_H-paniculata_contig375.9866.1|Name=mRNA_H-paniculata_contig375.9866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig375:1728..8439- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGACGAGACAAACGCAGGCCCTTGCATCATCAGCGATGTGCGACG
AGACAAACGCAGGCCCTTGCATCATCAGCGAAGGGAGCCCCATGCCGACT
CCTTTTACCCCCATGCCTACTGATCCCACAATATCTTCCGAGCCCTTGCC
GGGGCCCATCGACGTGGCTTTTTCTGGGTGCTTTGCGGACACCGATACGG
ATCGCATTATGGAGCTGGCGAAGGAGGACCCCTTGATGAGTGTAGAGAAG
GGAGCCCCATGCCGACTCCTTTTACCCCCATGCCTACTGATCCCACAATA
TCTTCCGAGCCCTTGCCGGGGCCCATCGACGTGGCTTTTTCTGGGTGCTT
TGCGGACACCGATACGGATCGCATTATGGAGCTGGCGAAGGAGGACCCCT
TGATGAGTGTAGAGATGTGCGAAATGGAGTGCGTGGGAAGCGGGTACTTT
GGGCTGCAGTATGGTGTTCAGATGTGCGAAATGGAGTGCGTGGGAAGCGG
GTACTTTGGGCTGCAGTATGGTGTTCAGTGTTATTGCGGCGCCGAGGGCA
TAGACCACATGAAGCATGGCAAGTCCTCGAAATGCACAATCCCATGCCCG
GGAGACGCGAACCAAGTCTGCGGGGGGTCGTTTAGCATGACCGTCTACGA
TTACCTCACCCCCGGGGATGTTGACACTCTAGATACACCCGCGCCAGTGG
GTGTGGGTCCTCCGCCCCTAGGACCGGTTGCTCTCGGGTGCTTCGCGGAC
ATGGATGGCGAAATGCGCATCATGAAAGAGATCACCACCGAACCGATGAT
GACTCCCGAGTGTTATTGCGGCGCCGAGGGCATAGACCACATGAAGCATG
GCAAGTCCTCGAAATGCACAATCCCATGCCCGGGAGACGCGAACCAAGTC
TGCGGGGGGTCGTTTAGCATGACCGTCTACGATTACCTCACCCCCGGGGA
TGTTGACACTCTAGATACACCCGCGCCAGTGGGTGTGGGTCCTCCGCCCC
TAGGACCGGTTGCTCTCGGGTGCTTCGCGGACATGGATGGCGAAATGCGC
ATCATGAAAGAGATCACCACCGAACCGATGATGACTCCCGAGATGTGCGA
GAGGATATGTGTCGGAAACAAGTTCTTCGGGCTGCAGTACGGCGTTCAGA
TGTGCGAGAGGATATGTGTCGGAAACAAGTTCTTCGGGCTGCAGTACGGC
GTTCAGTGCTGGTGCGGCGGCGAGGATACCGACCATATGGTTCACGGCAA
GTCTGACGATTGCACAATGCCATGCGGGGGAGACCCTAGCCAGCTCTGTG
GAGGATCTTTCAGTATGGACGTCTTCGAGTACTAGTGCTGGTGCGGCGGC
GAGGATACCGACCATATGGTTCACGGCAAGTCTGACGATTGCACAATGCC
ATGCGGGGGAGACCCTAGCCAGCTCTGTGGAGGATCTTTCAGTATGGACG
TCTTCGAGTACTAG
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